Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002329

Physical Location & Seq

Genomic Coordinates Forward (+)

65855114 .. 65856684

Gene Structure 1571 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG491600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGCCAAATACACAGAGAAAATCATTCACAATATCATGGAGTCCCCAAATGTCAAACACATCTCGATCAGAATGCTTTATCCAACCTCACAATGCTTCGAAAGAATCAAAGAAGCCCTTTTATTTGACCCCCACTGACCTCGCCATGCTCTCCGAGCAATATATCCAGAAAGGTCTCCTCTTCACCAAACCTCCAAAAGCGAACAACCCTAATTTTCTTGAGACCCTTTTGGCGAAACTGAAGCACTCTCTTTCCCTCGCACTCGTTCACTTCTACCCGCTAGCGGGTCGCCTTGTGACCAAGAAAGAACAAGACCCTCATCTCTACTTGGTCTATGTGGATTGCAGCAATAGCCCTGGAGCTAAATTCATCCATGCTTCTCTTGACATGTCCATCTCGGACATTCTTTCCCCAACTGATGTGCCCTTGGTGGTTCAGTCCTTGTTTGATCACGACAGGGCGGTCAACCACGACGGACACACCACGTCGTTGTTGACGGCTCAAGTCACGGAATTGGTGGACGGCGTTTTCATCGGGTTGTCAATGAACCATTGTCTCGGTGACGGAACATCTTACTGGAATTTCTTCAACACTTGGTCTGAAATTTTCCAAGCGCAAGAAAACAATGTCACTCTTTCCAAGATCTCCAATCCACCAGTGTTGGATCGGTGGTTTCCAGAAGGTCATGGTCCGATTATCAGCCTTCCTTTCACAGACCCGAGTGAGTTCATTGACAGAGTCGAAGCACCAAAACTCAGAGAGAGAATGTTTCATTTCTCCGCAGAATCCCTAGCCAAACTCAAAGCCAAGAAGGCCAATTCAGAGAACGAGACCAGCAACATCTCCACCTTCCAGGCCTTGTCTGCGCTTCTCTGGAGGACTATAACTCGAGCGCGTCTTCTGCCACCAGATCAAGAAACCAGTTGCAGATTGGCTGCCAATAACAGAGCAAGATTAGACCCGCCATTGCCTCCGAATTACTTTGGCAACGCCATTTATCCGATCAAATCAGAACTGATCAATGCGCGCTGTGTGATGATGGGGAGTAGTCCGAGATTCGACATGTATAAAAATGAATTTGGGATGGGAAAAGCTGTGGCTCTACGAAGTGGGTATGCCAACAAGTTTAGTGGAAAAGTGTCGTCGTTTCAAGGGCGCGAAGCAGGAAGCATTGACTTGGAGGTGTGTCTTCTTCCAGAGGTAATGAGGGCTCTTGAATCTGATGATGAGTTTATGGAAGCTGCCTCTGTACCAAGTTATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010143 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0043170 GO:0044424 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0051179 GO:0071704 GO:0071840 GO:0090558 GO:0090626 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

421

Amino Acids

47.14

Weight (kDa)

6.43

Isoelectric Point (pI)

42.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	23 - 333	8.7e-54	Transferase family
Transferase	PF02458	344 - 412	2e-08	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07850 AT5G42830
fragaria_vesca	FvH4_2g34050 FvH4_2g34060 FvH4_2g34061
malus_domestica	MD08G1096500.v1.1 MD08G1096600.v1.1 MD15G1079200.v1.1 MD15G1079300.v1.1
prunus_persica	Prupe.1G432300_v2.0.a1 Prupe.1G432400_v2.0.a1 Prupe.1G432500_v2.0.a1
pyrus_communis	pycom08g07870 pycom15g07380
rosa_chinensis	RchiOBHm_Chr6g0308291 RchiOBHm_Chr6g0308301 RchiOBHm_Chr6g0308421
rosa_laevigata	RLG00000010650
rosa_multiflora	Rmu_co8463877.1_g000001 Rmu_sc0003583.1_g000001 Rmu_sc0005523.1_g000006 Rmu_sc0011796.1_g000002 Rmu_ssc0000355.1_g000011
rosa_roxburghii	Rroxscaffold_7G00160150 Rroxscaffold_7G00160240 Rroxscaffold_7G00160280
rosa_rugosa	Rorug06G0366000 Rorug06G0366500
rosa_samantha	Rh6AG474900 Rh6AG475000 Rh6AG476200 Rh6BG485500 Rh6BG485600 Rh6BG485700 Rh6BG486400 Rh6CG490600 Rh6CG490800 Rh6CG490900 Rh6CG491600 Rh6DG477200
rosa_wichuraiana	Rw6G041430 Rw6G041500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	461
AccII	CGCG	3 cut(s)	895, 1027, 1158
AciI	CCGC	5 cut(s)	278, 284, 461, 780, 962
AclWI	GGATC	1 cut(s)	672
AcsI	RAATTY	4 cut(s)	365, 580, 603, 1076
AcuI	CTGAAG	1 cut(s)	260
AfaI	GTAC	1 cut(s)	1251
AfiI	CCNNNNNNNGG	2 cut(s)	283, 284
AflIII	ACRYGT	2 cut(s)	387, 1062
AgsI	TTSAA	3 cut(s)	589, 1151, 1217
AjiI	CACGTC	1 cut(s)	486
AjnI	CCWGG	2 cut(s)	355, 852
AluBI	AGCT	3 cut(s)	362, 1094, 1241
AluI	AGCT	3 cut(s)	362, 1094, 1241
Alw26I	GTCTC	4 cut(s)	179, 215, 560, 824
AlwI	GGATC	1 cut(s)	672
Ama87I	CYCGRG	2 cut(s)	718, 888
AoxI	GGCC	2 cut(s)	813, 855
ApeKI	GCWGC	3 cut(s)	345, 935, 1241
ApoI	RAATTY	4 cut(s)	365, 580, 603, 1076
Asp700I	GAANNNNTTC	1 cut(s)	584
AspLEI	GCGC	6 cut(s)	616, 868, 895, 1027, 1029, 1158
AspS9I	GGNCC	1 cut(s)	689
AsuHPI	GGTGA	2 cut(s)	175, 572
AsuII	TTCGAA	1 cut(s)	98
AsuNHI	GCTAGC	1 cut(s)	280
AvaI	CYCGRG	2 cut(s)	718, 888
AvaII	GGWCC	1 cut(s)	689
BaeGI	GKGCMC	1 cut(s)	426
BanII	GRGCYC	1 cut(s)	1213
BbsI	GAAGAC	2 cut(s)	890, 1181
BbvI	GCAGC	3 cut(s)	357, 922, 1228
BccI	CCATC	3 cut(s)	401, 1033, 1078
BceAI	ACGGC	2 cut(s)	513, 538
BcgI	CGANNNNNNTGC	2 cut(s)	54, 88
BciT130I	CCWGG	2 cut(s)	357, 854
BclI	TGATCA	2 cut(s)	448, 1017
BcoDI	GTCTC	4 cut(s)	179, 215, 560, 824
BfaI	CTAG	2 cut(s)	281, 791
BglI	GCCNNNNNGGC	1 cut(s)	812
BglII	AGATCT	1 cut(s)	642
BisI	GCNGC	3 cut(s)	346, 936, 1242
BlsI	GCNGC	3 cut(s)	347, 937, 1243
Bme1390I	CCNGG	2 cut(s)	357, 854
Bme18I	GGWCC	1 cut(s)	689
BmeT110I	CYCGRG	2 cut(s)	718, 888
BmgBI	CACGTC	1 cut(s)	486
BmgT120I	GGNCC	1 cut(s)	689
BmrFI	CCNGG	2 cut(s)	357, 854
BmtI	GCTAGC	1 cut(s)	284
BpiI	GAAGAC	2 cut(s)	890, 1181
BpmI	CTGGAG	2 cut(s)	378, 895
Bpu14I	TTCGAA	1 cut(s)	98
BpuEI	CTTGAG	2 cut(s)	239, 486
BsaI	GGTCTC	3 cut(s)	179, 215, 824
BsaJI	CCNNGG	2 cut(s)	355, 426
BsaXI	ACNNNNNCTCC	2 cut(s)	175, 205
Bsc4I	CCNNNNNNNGG	2 cut(s)	283, 284
Bse1I	ACTGG	3 cut(s)	581, 656, 921
Bse3DI	GCAATG	1 cut(s)	965
BseBI	CCWGG	2 cut(s)	357, 854
BseDI	CCNNGG	2 cut(s)	355, 426
BseGI	GGATG	2 cut(s)	369, 1089
BseLI	CCNNNNNNNGG	2 cut(s)	283, 284
BseMI	GCAATG	1 cut(s)	965
BseMII	CTCAG	1 cut(s)	769
BseNI	ACTGG	3 cut(s)	581, 656, 921
BsePI	GCGCGC	1 cut(s)	1025
BseRI	GAGGAG	1 cut(s)	167
BseSI	GKGCMC	1 cut(s)	426
BseXI	GCAGC	3 cut(s)	357, 922, 1228
Bsh1236I	CGCG	3 cut(s)	895, 1027, 1158
BshFI	GGCC	2 cut(s)	815, 857
BsiHKCI	CYCGRG	2 cut(s)	718, 888
BslFI	GGGAC	1 cut(s)	27
BslI	CCNNNNNNNGG	2 cut(s)	283, 284
BsmAI	GTCTC	4 cut(s)	179, 215, 560, 824
BsmFI	GGGAC	1 cut(s)	27
BsmI	GAATGC	1 cut(s)	77
BsnI	GGCC	2 cut(s)	815, 857
Bso31I	GGTCTC	3 cut(s)	179, 215, 824
BsoBI	CYCGRG	2 cut(s)	718, 888
Bsp119I	TTCGAA	1 cut(s)	98
Bsp1286I	GDGCHC	2 cut(s)	426, 1213
Bsp143I	GATC	7 cut(s)	65, 448, 642, 664, 910, 1002, 1017
BspACI	CCGC	5 cut(s)	278, 284, 461, 780, 962
BspANI	GGCC	2 cut(s)	815, 857
BspCNI	CTCAG	1 cut(s)	768
BspFNI	CGCG	3 cut(s)	895, 1027, 1158
BspOI	GCTAGC	1 cut(s)	284
BspPI	GGATC	1 cut(s)	672
BspT104I	TTCGAA	1 cut(s)	98
BspTNI	GGTCTC	3 cut(s)	179, 215, 824
BsrDI	GCAATG	1 cut(s)	965
BsrI	ACTGG	3 cut(s)	581, 656, 921
BssECI	CCNNGG	2 cut(s)	355, 426
BssHII	GCGCGC	1 cut(s)	1025
BssMI	GATC	7 cut(s)	65, 448, 642, 664, 910, 1002, 1017
BssT1I	CCWWGG	1 cut(s)	426
Bst2UI	CCWGG	2 cut(s)	357, 854
Bst6I	CTCTTC	1 cut(s)	185
BstBI	TTCGAA	1 cut(s)	98
BstC8I	GCNNGC	2 cut(s)	282, 1027
BstDEI	CTNAG	1 cut(s)	755
BstF5I	GGATG	2 cut(s)	369, 1089
BstFNI	CGCG	3 cut(s)	895, 1027, 1158
BstHHI	GCGC	6 cut(s)	616, 868, 895, 1027, 1029, 1158
BstKTI	GATC	7 cut(s)	68, 451, 645, 667, 913, 1005, 1020
BstMAI	GTCTC	4 cut(s)	179, 215, 560, 824
BstMBI	GATC	7 cut(s)	65, 448, 642, 664, 910, 1002, 1017
BstMWI	GCNNNNNNNGC	5 cut(s)	154, 351, 812, 863, 901
BstNI	CCWGG	2 cut(s)	357, 854
BstNSI	RCATGY	2 cut(s)	391, 1066
BstSCI	CCNGG	2 cut(s)	355, 852
BstSLI	GKGCMC	1 cut(s)	426
BstUI	CGCG	3 cut(s)	895, 1027, 1158
BstV1I	GCAGC	3 cut(s)	357, 922, 1228
BstV2I	GAAGAC	2 cut(s)	890, 1181
BstX2I	RGATCY	1 cut(s)	642
BstYI	RGATCY	1 cut(s)	642
BsuRI	GGCC	2 cut(s)	815, 857
BtrI	CACGTC	1 cut(s)	486
BtsCI	GGATG	2 cut(s)	369, 1089
BtsIMutI	CAGTG	2 cut(s)	132, 663
Cac8I	GCNNGC	2 cut(s)	282, 1027
CfoI	GCGC	6 cut(s)	616, 868, 895, 1027, 1029, 1158
Cfr13I	GGNCC	1 cut(s)	689
CseI	GACGC	1 cut(s)	884
Csp6I	GTAC	1 cut(s)	1250
CspCI	CAANNNNNGTGG	4 cut(s)	642, 677, 1111, 1146
CviAII	CATG	6 cut(s)	36, 145, 374, 388, 686, 1063
CviQI	GTAC	1 cut(s)	1250
DdeI	CTNAG	1 cut(s)	755
DpnI	GATC	7 cut(s)	67, 450, 644, 666, 912, 1004, 1019
DpnII	GATC	7 cut(s)	65, 448, 642, 664, 910, 1002, 1017
DrdI	GACNNNNNNGTC	1 cut(s)	461
DseDI	GACNNNNNNGTC	1 cut(s)	461
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
Eco130I	CCWWGG	1 cut(s)	426
Eco147I	AGGCCT	1 cut(s)	857
Eco24I	GRGCYC	1 cut(s)	1213
Eco31I	GGTCTC	3 cut(s)	179, 215, 824
Eco47I	GGWCC	1 cut(s)	689
Eco57I	CTGAAG	1 cut(s)	260
Eco88I	CYCGRG	2 cut(s)	718, 888
EcoRII	CCWGG	2 cut(s)	355, 852
EcoT14I	CCWWGG	1 cut(s)	426
EcoT38I	GRGCYC	1 cut(s)	1213
ErhI	CCWWGG	1 cut(s)	426
FaeI	CATG	6 cut(s)	39, 148, 377, 391, 689, 1066
FalI	AAGNNNNNCTT	2 cut(s)	101, 133
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	6 cut(s)	35, 144, 373, 387, 685, 1062
FauI	CCCGC	3 cut(s)	277, 285, 969
FbaI	TGATCA	2 cut(s)	448, 1017
Fnu4HI	GCNGC	3 cut(s)	346, 936, 1242
FokI	GGATG	2 cut(s)	356, 1096
FriOI	GRGCYC	1 cut(s)	1213
Fsp4HI	GCNGC	3 cut(s)	346, 936, 1242
FspBI	CTAG	2 cut(s)	281, 791
GlaI	GCGC	6 cut(s)	615, 867, 894, 1026, 1028, 1157
GluI	GCNGC	3 cut(s)	346, 936, 1242
GsuI	CTGGAG	2 cut(s)	378, 895
HaeIII	GGCC	2 cut(s)	815, 857
HgaI	GACGC	1 cut(s)	884
HhaI	GCGC	6 cut(s)	616, 868, 895, 1027, 1029, 1158
Hin1II	CATG	6 cut(s)	39, 148, 377, 391, 689, 1066
Hin6I	GCGC	6 cut(s)	614, 866, 893, 1025, 1027, 1156
HinP1I	GCGC	6 cut(s)	614, 866, 893, 1025, 1027, 1156
HincII	GTYRAC	2 cut(s)	466, 495
HindII	GTYRAC	2 cut(s)	466, 495
HinfI	GANTC	6 cut(s)	40, 104, 738, 785, 1056, 1217
HphI	GGTGA	2 cut(s)	175, 572
Hpy166II	GTNNAC	4 cut(s)	268, 466, 495, 520
Hpy8I	GTNNAC	4 cut(s)	268, 466, 495, 520
Hpy99I	CGWCG	3 cut(s)	476, 490, 1147
HpyAV	CCTTC	4 cut(s)	674, 713, 805, 859
HpyCH4IV	ACGT	1 cut(s)	485
HpyCH4V	TGCA	2 cut(s)	345, 927
HpyF10VI	GCNNNNNNNGC	5 cut(s)	154, 351, 812, 863, 901
HpyF3I	CTNAG	1 cut(s)	755
HpySE526I	ACGT	1 cut(s)	485
Hsp92II	CATG	6 cut(s)	39, 148, 377, 391, 689, 1066
HspAI	GCGC	6 cut(s)	614, 866, 893, 1025, 1027, 1156
Ksp22I	TGATCA	2 cut(s)	448, 1017
Kzo9I	GATC	7 cut(s)	65, 448, 642, 664, 910, 1002, 1017
LmnI	GCTCC	1 cut(s)	359
Lsp1109I	GCAGC	3 cut(s)	357, 922, 1228
MaeI	CTAG	2 cut(s)	281, 791
MaeII	ACGT	1 cut(s)	485
MaeIII	GTNAC	4 cut(s)	295, 505, 560, 628
MalI	GATC	7 cut(s)	67, 450, 644, 666, 912, 1004, 1019
MboI	GATC	7 cut(s)	65, 448, 642, 664, 910, 1002, 1017
MboII	GAAGA	5 cut(s)	172, 577, 890, 1181, 1184
MflI	RGATCY	1 cut(s)	642
MhlI	GDGCHC	2 cut(s)	426, 1213
MluCI	AATT	8 cut(s)	211, 365, 512, 580, 603, 817, 976, 1076
MlyI	GAGTC	2 cut(s)	49, 747
MmeI	TCCRAC	2 cut(s)	106, 642
MroXI	GAANNNNTTC	1 cut(s)	584
MspR9I	CCNGG	2 cut(s)	357, 854
Mva1269I	GAATGC	1 cut(s)	77
MvaI	CCWGG	2 cut(s)	357, 854
MvnI	CGCG	3 cut(s)	895, 1027, 1158
MwoI	GCNNNNNNNGC	5 cut(s)	154, 351, 812, 863, 901
NdeII	GATC	7 cut(s)	65, 448, 642, 664, 910, 1002, 1017
NheI	GCTAGC	1 cut(s)	280
NlaIII	CATG	6 cut(s)	39, 148, 377, 391, 689, 1066
NmuCI	GTSAC	4 cut(s)	295, 505, 560, 628
NspI	RCATGY	2 cut(s)	391, 1066
NspV	TTCGAA	1 cut(s)	98
PaeR7I	CTCGAG	1 cut(s)	888
PauI	GCGCGC	1 cut(s)	1025
PceI	AGGCCT	1 cut(s)	857
PciI	ACATGT	2 cut(s)	387, 1062
PctI	GAATGC	1 cut(s)	77
PdmI	GAANNNNTTC	1 cut(s)	584
PfeI	GAWTC	4 cut(s)	104, 785, 1056, 1217
PflFI	GACNNNGTC	1 cut(s)	737
PkrI	GCNGC	3 cut(s)	347, 937, 1243
PleI	GAGTC	2 cut(s)	48, 746
PpsI	GAGTC	2 cut(s)	48, 746
PscI	ACATGT	2 cut(s)	387, 1062
Psp6I	CCWGG	2 cut(s)	355, 852
PspGI	CCWGG	2 cut(s)	355, 852
PspPI	GGNCC	1 cut(s)	689
PspXI	VCTCGAGB	1 cut(s)	888
PsuI	RGATCY	1 cut(s)	642
PsyI	GACNNNGTC	1 cut(s)	737
PteI	GCGCGC	1 cut(s)	1025
RsaI	GTAC	1 cut(s)	1251
RsaNI	GTAC	1 cut(s)	1250
SatI	GCNGC	3 cut(s)	346, 936, 1242
Sau3AI	GATC	7 cut(s)	65, 448, 642, 664, 910, 1002, 1017
Sau96I	GGNCC	1 cut(s)	689
SchI	GAGTC	2 cut(s)	49, 747
ScrFI	CCNGG	2 cut(s)	357, 854
SduI	GDGCHC	2 cut(s)	426, 1213
Sfr274I	CTCGAG	1 cut(s)	888
SfuI	TTCGAA	1 cut(s)	98
SinI	GGWCC	1 cut(s)	689
SlaI	CTCGAG	1 cut(s)	888
SmlI	CTYRAG	3 cut(s)	218, 501, 888
SmoI	CTYRAG	3 cut(s)	218, 501, 888
Sse9I	AATT	8 cut(s)	211, 365, 512, 580, 603, 817, 976, 1076
SseBI	AGGCCT	1 cut(s)	857
SsiI	CCGC	5 cut(s)	278, 284, 461, 780, 962
SspMI	CTAG	2 cut(s)	281, 791
StuI	AGGCCT	1 cut(s)	857
StyD4I	CCNGG	2 cut(s)	355, 852
StyI	CCWWGG	1 cut(s)	426
TaiI	ACGT	1 cut(s)	488
TaqI	TCGA	5 cut(s)	64, 98, 741, 889, 1059
TasI	AATT	8 cut(s)	211, 365, 512, 580, 603, 817, 976, 1076
TfiI	GAWTC	4 cut(s)	104, 785, 1056, 1217
TscAI	CASTG	2 cut(s)	139, 663
TseFI	GTSAC	4 cut(s)	295, 505, 560, 628
TseI	GCWGC	3 cut(s)	345, 935, 1241
Tsp45I	GTSAC	4 cut(s)	295, 505, 560, 628
TspDTI	ATGAA	6 cut(s)	358, 520, 560, 718, 761, 1089
TspGWI	ACGGA	3 cut(s)	489, 524, 579
TspRI	CASTG	2 cut(s)	139, 663
Tth111I	GACNNNGTC	1 cut(s)	737
VpaK11BI	GGWCC	1 cut(s)	689
XapI	RAATTY	4 cut(s)	365, 580, 603, 1076
XceI	RCATGY	2 cut(s)	391, 1066
XcmI	CCANNNNNNNNNTGG	1 cut(s)	928
XhoI	CTCGAG	1 cut(s)	888
XmnI	GAANNNNTTC	1 cut(s)	584
XspI	CTAG	2 cut(s)	281, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.