Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000886

Physical Location & Seq

Genomic Coordinates Reverse (-)

51386527 .. 51391777

Gene Structure 5251 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0366500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1470 bp

ATGGCGGAGGTGGTAGAAGACAGCGAGGCTCCTTTGAAGAAGGAGGAGGAGGAGACGAGCGATATGGAGTCGAAGATATTGGATGCTATGCGGGCACGAATCCCACACTTCAAGGAACAATCAGATTCTTTGACCTTTGTGAATGTACGAAGAGTATTAGAGAAAGACTTGGGTTTGGAGCCTTCTGCATTGGATGCGCACAAAGGATTTGTCAAGGAACATTTATTGAAGTGCTTAGAAGGCGCTGGTGAGGACAATACCTCAAAGAGTTCTGGGCAGACTGATGAAAAAAGTCTGATTAAAGGGGAAGCAGCAGATTCTATTGAAGGGCATGAATTGAATAAAGATATGAAGGAAACTAGCTCAGCAGATGAGGAGAAGGTCGAAGACTCTCCTGCTTCGGATCTTCTAACAGGGCATAAAACAGCCAAATCAAAAACTGAGGGATCTAAAAGCTCCATCAACAAAAAGGCTCCAACTGAGGCTATGATAAAGTTAGCCCTTGGAAAAAGAGGTTCATATATCAAAGCTAATACTGAGAAGCTTACTATGGGTGAACTTCGTCGAGTTTTAGAGAAAGATCTTAAACTTGAGACATATAGTCTTGATCCTTATAAGAAGTTTATAAATCAGCAATTAGACGAGGTTTTAGAATCTTGTGAAGATCCTGAACCTGTCAAAAATGTCAAGAAAAATGTTAAGAAACCTCAGAGAAAAACAACTCCTGAGGAGATAAGTGAAGAGAGTTCTGGTCCTGCAGATAGTGAAACTGATGAGGAAGAAGATGAAGTGAAACCTAGAAAAAAAAGTGTTACAAAAGGTAAGATGCAGAATTATGATGGCCTGAAGAAACGGAAAAGATTGGCAAAGGAGACCAACATCTCTGGAAAGAAGCGGATCAAGTCTCTTAAGGCAGATTCAGAGGAAAAAAGTGATGCAAAGGACGGTGGAAATGTGTCTGAAGATGAAGATTCTCAGTCATCTGCTGAAAAACCTGTGAAGAAGAAAGAAGTTTCAACACCTGCATACGGTAAACGGGTGGAGCATCTAAGATCAGTTATCAAAGCTTGTGGAATGAGCGTTCCCCCCTCAATTTACAAGAAAGTCAAGCAGGTGCCCGAGAACAAACGTGAAGCTCACCTGATAAAGGAGTTAGAGGACATACTCGGTCGAGAAGGGTTATCTTCCAGTCCCACTGAGAAAGAAATCAAGGAAGTCAAAAAGAAAAAGGAGAAAGCTAAAGAGCTTGAGGGCATTGACATGAGTAATATTGTAACGAGTTCACGTAGAAGGTCCGCGACTAGTTTTATACCTCCTCCCAAGCCCAAAATACCAGTTGATAGTGATTCTGATGCTGAAGATACAGATGATGACAATGATGAGGAAGAGAATGAGGTTGAGGACGAGGATAATAGTAGTAGTGATGACAACCATAGTGATAAGGATGATGGTGGTGATGACAGTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010143 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0043170 GO:0044424 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0051179 GO:0071704 GO:0071840 GO:0090558 GO:0090626 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

489

Amino Acids

54.38

Weight (kDa)

5.11

Isoelectric Point (pI)

60.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CHZ	PF09649	411 - 443	1.5e-09	Histone chaperone domain CHZ

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000886)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g05260 FvH4_3g05270 FvH4_3g09690 FvH4_3g38380 FvH4_3g39340 FvH4_3g39340 FvH4_6g09400 FvH4_6g09680 FvH4_6g09690
rosa_chinensis	RchiOBHm_Chr3g0460331 RchiOBHm_Chr3g0476661 RchiOBHm_Chr5g0014451 RchiOBHm_Chr6g0308401 RchiOBHm_Chr7g0215881
rosa_laevigata	RLG00000001978 RLG00000010644 RLG00000012354 RLG00000012356 RLG00000012358 RLG00000016486 RLG00000025021 RLG00000025022 RLG00000025023 RLG00000032111
rosa_multiflora	Rmu_co8233111.1_g000001 Rmu_co8485739.1_g000001 Rmu_sc0000449.1_g000008 Rmu_sc0000449.1_g000009 Rmu_sc0000449.1_g000010 Rmu_sc0001356.1_g000007 Rmu_sc0003583.1_g000005 Rmu_sc0008241.1_g000015 Rmu_sc0010030.1_g000005
rosa_roxburghii	Rroxscaffold_1G00062120 Rroxscaffold_6G00405110 Rroxscaffold_6G00419610 Rroxscaffold_6G00419620 Rroxscaffold_6G00419630
rosa_rugosa	Rorug03G0156300 Rorug06G0366500
rosa_samantha	Rh2BG091300 Rh2CG093900 Rh3AG099500 Rh3AG099600 Rh3BG103500 Rh3BG103600 Rh3BG239000 Rh3CG105100 Rh3CG105200 Rh3CG105300 Rh3CG233000 Rh3CG233100 Rh3DG104900 Rh3DG105000 Rh3DG232900 Rh5AG113300 Rh5BG110000 Rh5CG121800 Rh5DG109100 Rh6AG476000 Rh6BG290200 Rh6BG290500 Rh6BG316800 Rh6BG486300 Rh6CG491500
rosa_wichuraiana	Rw5G009830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	615, 626
AarI	CACCTGC	2 cut(s)	1030, 1102
Acc16I	TGCGCA	1 cut(s)	198
Acc36I	ACCTGC	2 cut(s)	1030, 1102
AccB1I	GGYRCC	1 cut(s)	1114
AccII	CGCG	1 cut(s)	1298
AciI	CCGC	4 cut(s)	5, 91, 895, 1296
AclWI	GGATC	5 cut(s)	411, 454, 602, 659, 905
AcuI	CTGAAG	3 cut(s)	866, 981, 1377
AfaI	GTAC	1 cut(s)	147
AfiI	CCNNNNNNNGG	2 cut(s)	1028, 1147
AflII	CTTAAG	1 cut(s)	908
AgsI	TTSAA	6 cut(s)	37, 112, 229, 326, 340, 1017
AhdI	GACNNNNNGTC	1 cut(s)	600
AhlI	ACTAGT	1 cut(s)	1301
AloI	GAACNNNNNNTCC	2 cut(s)	1065, 1097
AluBI	AGCT	8 cut(s)	363, 456, 530, 544, 1067, 1136, 1238, 1246
AluI	AGCT	8 cut(s)	363, 456, 530, 544, 1067, 1136, 1238, 1246
Alw26I	GTCTC	4 cut(s)	47, 587, 866, 909
AlwI	GGATC	5 cut(s)	411, 454, 602, 659, 905
Ama87I	CYCGRG	1 cut(s)	1118
AoxI	GGCC	1 cut(s)	841
ApeKI	GCWGC	1 cut(s)	311
ArsI	GACNNNNNNTTYG	2 cut(s)	195, 227
AspLEI	GCGC	2 cut(s)	199, 245
AspS9I	GGNCC	2 cut(s)	752, 1293
AsuHPI	GGTGA	4 cut(s)	260, 566, 1130, 1466
AvaI	CYCGRG	1 cut(s)	1118
AvaII	GGWCC	2 cut(s)	752, 1293
AxyI	CCTNAGG	1 cut(s)	726
BaeGI	GKGCMC	2 cut(s)	97, 1119
BanI	GGYRCC	1 cut(s)	1114
BbsI	GAAGAC	2 cut(s)	24, 393
BbvI	GCAGC	1 cut(s)	323
BccI	CCATC	3 cut(s)	467, 833, 1442
BcoDI	GTCTC	4 cut(s)	47, 587, 866, 909
BcuI	ACTAGT	1 cut(s)	1301
BfaI	CTAG	3 cut(s)	360, 798, 1302
BfmI	CTRYAG	1 cut(s)	756
BfoI	RGCGCY	1 cut(s)	246
BfrI	CTTAAG	1 cut(s)	908
BfuAI	ACCTGC	2 cut(s)	1030, 1102
BglII	AGATCT	1 cut(s)	580
BisI	GCNGC	1 cut(s)	312
BlpI	GCTNAGC	1 cut(s)	364
BlsI	GCNGC	1 cut(s)	313
Bme18I	GGWCC	2 cut(s)	752, 1293
BmeRI	GACNNNNNGTC	1 cut(s)	600
BmeT110I	CYCGRG	1 cut(s)	1118
BmgT120I	GGNCC	2 cut(s)	752, 1293
BmiI	GGNNCC	4 cut(s)	30, 180, 474, 1116
BmsI	GCATC	6 cut(s)	73, 184, 816, 925, 1054, 1342
BpiI	GAAGAC	2 cut(s)	24, 393
Bpu1102I	GCTNAGC	1 cut(s)	364
BpuEI	CTTGAG	2 cut(s)	611, 1268
BsaAI	YACGTR	1 cut(s)	1286
BsaI	GGTCTC	1 cut(s)	866
BsaJI	CCNNGG	1 cut(s)	502
Bsc4I	CCNNNNNNNGG	2 cut(s)	1028, 1147
Bse1I	ACTGG	2 cut(s)	1188, 1334
Bse21I	CCTNAGG	1 cut(s)	726
BseDI	CCNNGG	1 cut(s)	502
BseGI	GGATG	3 cut(s)	88, 199, 1450
BseLI	CCNNNNNNNGG	2 cut(s)	1028, 1147
BseMII	CTCAG	8 cut(s)	378, 432, 471, 528, 717, 722, 989, 1188
BseNI	ACTGG	2 cut(s)	1188, 1334
BseRI	GAGGAG	6 cut(s)	59, 62, 65, 389, 743, 1305
BseSI	GKGCMC	2 cut(s)	97, 1119
BseXI	GCAGC	1 cut(s)	323
Bsh1236I	CGCG	1 cut(s)	1298
Bsh1285I	CGRYCG	1 cut(s)	1171
BshFI	GGCC	1 cut(s)	843
BshNI	GGYRCC	1 cut(s)	1114
BsiEI	CGRYCG	1 cut(s)	1171
BsiHKCI	CYCGRG	1 cut(s)	1118
BslFI	GGGAC	1 cut(s)	1176
BslI	CCNNNNNNNGG	2 cut(s)	1028, 1147
BsmAI	GTCTC	4 cut(s)	47, 587, 866, 909
BsmBI	CGTCTC	1 cut(s)	47
BsmFI	GGGAC	1 cut(s)	1176
BsnI	GGCC	1 cut(s)	843
Bso31I	GGTCTC	1 cut(s)	866
BsoBI	CYCGRG	1 cut(s)	1118
Bsp1286I	GDGCHC	2 cut(s)	97, 1119
Bsp143I	GATC	7 cut(s)	403, 446, 580, 607, 664, 897, 1052
Bsp1720I	GCTNAGC	1 cut(s)	364
BspACI	CCGC	4 cut(s)	5, 91, 895, 1296
BspANI	GGCC	1 cut(s)	843
BspCNI	CTCAG	8 cut(s)	377, 433, 472, 529, 718, 721, 988, 1189
BspFNI	CGCG	1 cut(s)	1298
BspLI	GGNNCC	4 cut(s)	30, 180, 474, 1116
BspMAI	CTGCAG	1 cut(s)	760
BspMI	ACCTGC	2 cut(s)	1030, 1102
BspPI	GGATC	5 cut(s)	411, 454, 602, 659, 905
BspT107I	GGYRCC	1 cut(s)	1114
BspTI	CTTAAG	1 cut(s)	908
BspTNI	GGTCTC	1 cut(s)	866
BsrI	ACTGG	2 cut(s)	1188, 1334
BssECI	CCNNGG	1 cut(s)	502
BssMI	GATC	7 cut(s)	403, 446, 580, 607, 664, 897, 1052
BssT1I	CCWWGG	1 cut(s)	502
Bst4CI	ACNGT	3 cut(s)	947, 1031, 1463
Bst6I	CTCTTC	3 cut(s)	145, 735, 1380
BstAFI	CTTAAG	1 cut(s)	908
BstAPI	GCANNNNNTGC	1 cut(s)	194
BstBAI	YACGTR	1 cut(s)	1286
BstC8I	GCNNGC	1 cut(s)	93
BstENI	CCTNNNNNAGG	1 cut(s)	1145
BstF5I	GGATG	3 cut(s)	88, 199, 1450
BstFNI	CGCG	1 cut(s)	1298
BstH2I	RGCGCY	1 cut(s)	246
BstHHI	GCGC	2 cut(s)	199, 245
BstKTI	GATC	7 cut(s)	406, 449, 583, 610, 667, 900, 1055
BstMAI	GTCTC	4 cut(s)	47, 587, 866, 909
BstMBI	GATC	7 cut(s)	403, 446, 580, 607, 664, 897, 1052
BstMCI	CGRYCG	1 cut(s)	1171
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 194, 240
BstSFI	CTRYAG	1 cut(s)	756
BstSLI	GKGCMC	2 cut(s)	97, 1119
BstUI	CGCG	1 cut(s)	1298
BstV1I	GCAGC	1 cut(s)	323
BstV2I	GAAGAC	2 cut(s)	24, 393
BstX2I	RGATCY	4 cut(s)	403, 446, 580, 664
BstYI	RGATCY	4 cut(s)	403, 446, 580, 664
Bsu36I	CCTNAGG	1 cut(s)	726
BsuRI	GGCC	1 cut(s)	843
BtsCI	GGATG	3 cut(s)	88, 199, 1450
BtsIMutI	CAGTG	2 cut(s)	1194, 1468
BveI	ACCTGC	2 cut(s)	1030, 1102
Cac8I	GCNNGC	1 cut(s)	93
CfoI	GCGC	2 cut(s)	199, 245
Cfr13I	GGNCC	2 cut(s)	752, 1293
Csp6I	GTAC	1 cut(s)	146
CspCI	CAANNNNNGTGG	2 cut(s)	1051, 1086
CviAII	CATG	2 cut(s)	332, 1261
CviQI	GTAC	1 cut(s)	146
DpnI	GATC	7 cut(s)	405, 448, 582, 609, 666, 899, 1054
DpnII	GATC	7 cut(s)	403, 446, 580, 607, 664, 897, 1052
DriI	GACNNNNNGTC	1 cut(s)	600
Eam1104I	CTCTTC	3 cut(s)	145, 735, 1380
Eam1105I	GACNNNNNGTC	1 cut(s)	600
EarI	CTCTTC	3 cut(s)	145, 735, 1380
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	502
Eco31I	GGTCTC	1 cut(s)	866
Eco47I	GGWCC	2 cut(s)	752, 1293
Eco57I	CTGAAG	3 cut(s)	866, 981, 1377
Eco81I	CCTNAGG	1 cut(s)	726
Eco88I	CYCGRG	1 cut(s)	1118
EcoNI	CCTNNNNNAGG	1 cut(s)	1145
EcoT14I	CCWWGG	1 cut(s)	502
ErhI	CCWWGG	1 cut(s)	502
Esp3I	CGTCTC	1 cut(s)	47
FaeI	CATG	2 cut(s)	335, 1264
FaqI	GGGAC	1 cut(s)	1176
FatI	CATG	2 cut(s)	331, 1260
FauI	CCCGC	1 cut(s)	84
Fnu4HI	GCNGC	1 cut(s)	312
FokI	GGATG	3 cut(s)	95, 206, 1457
Fsp4HI	GCNGC	1 cut(s)	312
FspAI	RTGCGCAY	1 cut(s)	198
FspBI	CTAG	3 cut(s)	360, 798, 1302
FspI	TGCGCA	1 cut(s)	198
GlaI	GCGC	2 cut(s)	198, 244
GluI	GCNGC	1 cut(s)	312
HaeII	RGCGCY	1 cut(s)	246
HaeIII	GGCC	1 cut(s)	843
HhaI	GCGC	2 cut(s)	199, 245
Hin1II	CATG	2 cut(s)	335, 1264
Hin6I	GCGC	2 cut(s)	197, 243
HinP1I	GCGC	2 cut(s)	197, 243
HindIII	AAGCTT	2 cut(s)	542, 1065
HinfI	GANTC	9 cut(s)	68, 99, 125, 317, 389, 653, 917, 971, 1346
HphI	GGTGA	4 cut(s)	260, 566, 1130, 1466
Hpy166II	GTNNAC	3 cut(s)	557, 1034, 1283
Hpy188I	TCNGA	7 cut(s)	124, 297, 403, 711, 922, 961, 1351
Hpy188III	TCNNGA	6 cut(s)	605, 668, 688, 725, 885, 1172
Hpy8I	GTNNAC	3 cut(s)	557, 1034, 1283
Hpy99I	CGWCG	1 cut(s)	567
HpyAV	CCTTC	8 cut(s)	34, 192, 233, 320, 346, 373, 1169, 1284
HpyCH4III	ACNGT	3 cut(s)	947, 1031, 1463
HpyCH4IV	ACGT	2 cut(s)	1129, 1285
HpyCH4V	TGCA	5 cut(s)	188, 758, 829, 938, 1025
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 194, 240
HpySE526I	ACGT	2 cut(s)	1129, 1285
Hsp92II	CATG	2 cut(s)	335, 1264
HspAI	GCGC	2 cut(s)	197, 243
Kzo9I	GATC	7 cut(s)	403, 446, 580, 607, 664, 897, 1052
LmnI	GCTCC	5 cut(s)	34, 178, 461, 478, 1042
Lsp1109I	GCAGC	1 cut(s)	323
LweI	GCATC	6 cut(s)	73, 184, 816, 925, 1054, 1342
MaeI	CTAG	3 cut(s)	360, 798, 1302
MaeII	ACGT	2 cut(s)	1129, 1285
MaeIII	GTNAC	2 cut(s)	811, 1273
MalI	GATC	7 cut(s)	405, 448, 582, 609, 666, 899, 1054
MboI	GATC	7 cut(s)	403, 446, 580, 607, 664, 897, 1052
MflI	RGATCY	4 cut(s)	403, 446, 580, 664
MhlI	GDGCHC	2 cut(s)	97, 1119
MluCI	AATT	4 cut(s)	335, 635, 832, 1092
MlyI	GAGTC	2 cut(s)	77, 383
MmeI	TCCRAC	1 cut(s)	500
MseI	TTAA	5 cut(s)	300, 585, 699, 909, 1468
MslI	CAYNNNNRTG	1 cut(s)	1259
MspCI	CTTAAG	1 cut(s)	908
MvnI	CGCG	1 cut(s)	1298
MwoI	GCNNNNNNNGC	3 cut(s)	92, 194, 240
NdeII	GATC	7 cut(s)	403, 446, 580, 607, 664, 897, 1052
NlaIII	CATG	2 cut(s)	335, 1264
NlaIV	GGNNCC	4 cut(s)	30, 180, 474, 1116
NsbI	TGCGCA	1 cut(s)	198
PaqCI	CACCTGC	2 cut(s)	1030, 1102
PfeI	GAWTC	7 cut(s)	99, 125, 317, 653, 917, 971, 1346
PkrI	GCNGC	1 cut(s)	313
PleI	GAGTC	2 cut(s)	76, 383
PpsI	GAGTC	2 cut(s)	76, 383
Ppu21I	YACGTR	1 cut(s)	1286
PsiI	TTATAA	2 cut(s)	615, 626
PspN4I	GGNNCC	4 cut(s)	30, 180, 474, 1116
PspPI	GGNCC	2 cut(s)	752, 1293
PstI	CTGCAG	1 cut(s)	760
PsuI	RGATCY	4 cut(s)	403, 446, 580, 664
RsaI	GTAC	1 cut(s)	147
RsaNI	GTAC	1 cut(s)	146
RseI	CAYNNNNRTG	1 cut(s)	1259
SaqAI	TTAA	5 cut(s)	300, 585, 699, 909, 1468
SatI	GCNGC	1 cut(s)	312
Sau3AI	GATC	7 cut(s)	403, 446, 580, 607, 664, 897, 1052
Sau96I	GGNCC	2 cut(s)	752, 1293
SchI	GAGTC	2 cut(s)	77, 383
SduI	GDGCHC	2 cut(s)	97, 1119
SfaNI	GCATC	6 cut(s)	73, 184, 816, 925, 1054, 1342
SfcI	CTRYAG	1 cut(s)	756
SinI	GGWCC	2 cut(s)	752, 1293
SmiMI	CAYNNNNRTG	1 cut(s)	1259
SmlI	CTYRAG	3 cut(s)	590, 908, 1247
SmoI	CTYRAG	3 cut(s)	590, 908, 1247
SpeI	ACTAGT	1 cut(s)	1301
Sse9I	AATT	4 cut(s)	335, 635, 832, 1092
SsiI	CCGC	4 cut(s)	5, 91, 895, 1296
SspI	AATATT	1 cut(s)	1270
SspMI	CTAG	3 cut(s)	360, 798, 1302
StyI	CCWWGG	1 cut(s)	502
TaaI	ACNGT	3 cut(s)	947, 1031, 1463
TaiI	ACGT	2 cut(s)	1132, 1288
TaqI	TCGA	4 cut(s)	71, 384, 565, 1171
TaqII	GACCGA	1 cut(s)	1157
TasI	AATT	4 cut(s)	335, 635, 832, 1092
TfiI	GAWTC	7 cut(s)	99, 125, 317, 653, 917, 971, 1346
Tru1I	TTAA	5 cut(s)	300, 585, 699, 909, 1468
Tru9I	TTAA	5 cut(s)	300, 585, 699, 909, 1468
TscAI	CASTG	2 cut(s)	1201, 1468
TseI	GCWGC	1 cut(s)	311
TspDTI	ATGAA	6 cut(s)	300, 348, 365, 507, 801, 981
TspGWI	ACGGA	1 cut(s)	868
TspRI	CASTG	2 cut(s)	1201, 1468
Vha464I	CTTAAG	1 cut(s)	908
VpaK11BI	GGWCC	2 cut(s)	752, 1293
XagI	CCTNNNNNAGG	1 cut(s)	1145
XspI	CTAG	3 cut(s)	360, 798, 1302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.