RLG00000025021

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000886
Physical Location & Seq
Forward (+)
41393249 .. 41394400
1152 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025021

Sequence Viewer

Length: 1152 bp
ATGTTGAGAGCGAAGAAGAAGATGAAGCCATCGCCACCGCCAAGGAGCCACGGCGTCGTTTCGAATATGGAGAACACTGAGATGGACCACGATCCATCTCTCAGTCGACGAAGATGGGAGGATTTAGACGAGGACTGTCTAGCAAATGTGTTTACAAAAGTTGGAATGGAGTCTCTGCTCTTGGCTGTTCCTTATGTATGCAAATCATGGTACGCAACTACTCTCAATCCTTTAAGCTGGAGGTTTCTCTCTTTTCCAGACTTTGAGCCTTATCCTCTGTTTACTGCTCCTTCTGATCATGATGTTAATGTTGTACTTGCGCCTGATGATATTAACATAGAAGAGGTTGAACCCAAGTCTTTTGGATCGTTTTACGATCAGTTTGTAGAAGAATATGGATTCGATAGGAGTCGTTTTTCGATCACAGCTTTTGTAAAAAATGTAGTGAATCGTAGCCATGGGAAGGCTATTTATGTCAAGCTACCTACATTTTGTACTGAGGAAGCGTTGAGATATGTCTCGGATGCTTGTCCGCAACTTAGGGGTTTTCGTTTTCCTGATGATTTAGCGATGTTCAAGCATTCTCGAATCATTCCGGAAGTTATTGGGAAATGGAAGTCGTTGAAGCACTTAAGTTTGGGAGGAAGCATGGCAGGAATTGCTATACAATACCACAGAAGTGGGGAATACATGTGTAAAGATTTCGAGGCGTTGTTGTCATTAATCAACTATGACAGTCCAAACAGCAGTACAAATTTGTATGATATCCTGGTGCAGGTTGGCATTCACTGCAAGAACCTCAAGAGTATGCATATTTTTGATGCCCTTGTTGGTGAAGTTGAGGCATTGACAATTGCGACGACGCTGCCGGATCTTATGCACTTAACCCTGGGACAATCTCAAATTCAGCGAGGTAGTCTTGTTATTCTCTTGAAGGGCTGCAAAAAGCTGAGTAGCTTTCATCTGGGGTATTGTGATGGTTTTGAAGAGTGTGATGAAGAAATATTGAAGCTTGCTTCCCATATTAGTAACTTCAGGTGTACAGGTGCTCCAAGTAGATTTTATACTCGCTTCGATGTGTTGAAGAAGATTGTTTTAACAATGGGTATAAGGAATTATGTTTGGAGGAAAAGGAAGATAATATCGGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

384

Amino Acids

43.62

Weight (kDa)

7.58

Isoelectric Point (pI)

58.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 766
AccI GTMKAC 1 cut(s) 106
AccIII TCCGGA 1 cut(s) 595
AciI CCGC 2 cut(s) 38, 533
AclWI GGATC 3 cut(s) 86, 373, 879
AcsI RAATTY 2 cut(s) 754, 903
AcuI CTGAAG 1 cut(s) 1018
AcyI GRCGYC 1 cut(s) 54
AfaI GTAC 5 cut(s) 212, 315, 496, 751, 1042
AfiI CCNNNNNNNGG 2 cut(s) 463, 775
AflII CTTAAG 1 cut(s) 631
AflIII ACRYGT 1 cut(s) 690
AgsI TTSAA 7 cut(s) 350, 577, 625, 934, 986, 1009, 1084
AjnI CCWGG 2 cut(s) 768, 888
AleI CACNNNNGTG 1 cut(s) 678
AluBI AGCT 6 cut(s) 237, 428, 481, 949, 957, 1012
AluI AGCT 6 cut(s) 237, 428, 481, 949, 957, 1012
Alw21I GWGCWC 1 cut(s) 1051
Alw26I GTCTC 2 cut(s) 177, 523
AlwI GGATC 3 cut(s) 86, 373, 879
Aor13HI TCCGGA 1 cut(s) 595
ApeKI GCWGC 2 cut(s) 865, 939
ApoI RAATTY 2 cut(s) 754, 903
AseI ATTAAT 1 cut(s) 722
AspLEI GCGC 1 cut(s) 322
AspS9I GGNCC 1 cut(s) 85
AsuHPI GGTGA 1 cut(s) 845
AsuII TTCGAA 1 cut(s) 62
AvaII GGWCC 1 cut(s) 85
Bbv12I GWGCWC 1 cut(s) 1051
BbvI GCAGC 2 cut(s) 852, 926
BccI CCATC 5 cut(s) 37, 76, 103, 108, 971
BceAI ACGGC 1 cut(s) 67
BcgI CGANNNNNNTGC 2 cut(s) 847, 881
BciT130I CCWGG 2 cut(s) 770, 890
BclI TGATCA 1 cut(s) 295
BcoDI GTCTC 2 cut(s) 177, 523
BfaI CTAG 1 cut(s) 140
BfrI CTTAAG 1 cut(s) 631
BfuAI ACCTGC 1 cut(s) 766
BisI GCNGC 2 cut(s) 866, 940
BlsI GCNGC 2 cut(s) 867, 941
Bme1390I CCNGG 2 cut(s) 770, 890
Bme18I GGWCC 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 85
BmiI GGNNCC 1 cut(s) 47
BmrFI CCNGG 2 cut(s) 770, 890
BmsI GCATC 2 cut(s) 514, 811
BpmI CTGGAG 1 cut(s) 259
Bpu14I TTCGAA 1 cut(s) 62
BpuEI CTTGAG 1 cut(s) 785
BsaHI GRCGYC 1 cut(s) 54
BsaJI CCNNGG 5 cut(s) 41, 49, 457, 888, 889
BsaWI WCCGGW 1 cut(s) 595
BsaXI ACNNNNNCTCC 2 cut(s) 1033, 1063
Bsc4I CCNNNNNNNGG 2 cut(s) 463, 775
BseAI TCCGGA 1 cut(s) 595
BseBI CCWGG 2 cut(s) 770, 890
BseDI CCNNGG 5 cut(s) 41, 49, 457, 888, 889
BseGI GGATG 1 cut(s) 529
BseLI CCNNNNNNNGG 2 cut(s) 463, 775
BseMII CTCAG 4 cut(s) 69, 115, 489, 941
BseXI GCAGC 2 cut(s) 852, 926
BsgI GTGCAG 1 cut(s) 794
BsiHKAI GWGCWC 1 cut(s) 1051
BsiSI CCGG 2 cut(s) 596, 869
BslFI GGGAC 1 cut(s) 906
BslI CCNNNNNNNGG 2 cut(s) 463, 775
BsmAI GTCTC 2 cut(s) 177, 523
BsmFI GGGAC 1 cut(s) 906
BsmI GAATGC 2 cut(s) 580, 783
Bsp119I TTCGAA 1 cut(s) 62
Bsp1286I GDGCHC 1 cut(s) 1051
Bsp13I TCCGGA 1 cut(s) 595
Bsp1407I TGTACA 1 cut(s) 1040
Bsp143I GATC 6 cut(s) 91, 295, 365, 376, 420, 871
Bsp19I CCATGG 1 cut(s) 457
BspACI CCGC 2 cut(s) 38, 533
BspCNI CTCAG 4 cut(s) 70, 114, 490, 942
BspEI TCCGGA 1 cut(s) 595
BspHI TCATGA 1 cut(s) 298
BspLI GGNNCC 1 cut(s) 47
BspMI ACCTGC 1 cut(s) 766
BspPI GGATC 3 cut(s) 86, 373, 879
BspT104I TTCGAA 1 cut(s) 62
BspTI CTTAAG 1 cut(s) 631
BsrGI TGTACA 1 cut(s) 1040
BssECI CCNNGG 5 cut(s) 41, 49, 457, 888, 889
BssMI GATC 6 cut(s) 91, 295, 365, 376, 420, 871
BssNI GRCGYC 1 cut(s) 54
BssT1I CCWWGG 2 cut(s) 41, 457
Bst2UI CCWGG 2 cut(s) 770, 890
Bst4CI ACNGT 2 cut(s) 137, 737
Bst6I CTCTTC 2 cut(s) 336, 981
BstACI GRCGYC 1 cut(s) 54
BstAFI CTTAAG 1 cut(s) 631
BstAPI GCANNNNNTGC 2 cut(s) 659, 789
BstAUI TGTACA 1 cut(s) 1040
BstBI TTCGAA 1 cut(s) 62
BstC8I GCNNGC 1 cut(s) 1014
BstDEI CTNAG 5 cut(s) 78, 101, 498, 539, 950
BstDSI CCRYGG 2 cut(s) 49, 457
BstENI CCTNNNNNAGG 1 cut(s) 773
BstF5I GGATG 1 cut(s) 529
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 6 cut(s) 94, 298, 368, 379, 423, 874
BstMAI GTCTC 2 cut(s) 177, 523
BstMBI GATC 6 cut(s) 91, 295, 365, 376, 420, 871
BstMWI GCNNNNNNNGC 2 cut(s) 659, 789
BstNI CCWGG 2 cut(s) 770, 890
BstNSI RCATGY 1 cut(s) 694
BstSCI CCNGG 2 cut(s) 768, 888
BstV1I GCAGC 2 cut(s) 852, 926
BstX2I RGATCY 1 cut(s) 871
BstXI CCANNNNNNTGG 1 cut(s) 680
BstYI RGATCY 1 cut(s) 871
BtgI CCRYGG 2 cut(s) 49, 457
BtgZI GCGATG 2 cut(s) 15, 584
BtsCI GGATG 1 cut(s) 529
BtsI GCAGTG 1 cut(s) 787
BtsIMutI CAGTG 2 cut(s) 75, 787
BveI ACCTGC 1 cut(s) 766
Cac8I GCNNGC 1 cut(s) 1014
CciI TCATGA 1 cut(s) 298
CfoI GCGC 1 cut(s) 322
Cfr13I GGNCC 1 cut(s) 85
CseI GACGC 2 cut(s) 43, 871
Csp6I GTAC 5 cut(s) 211, 314, 495, 750, 1041
CviAII CATG 5 cut(s) 207, 299, 458, 649, 691
CviQI GTAC 5 cut(s) 211, 314, 495, 750, 1041
DdeI CTNAG 5 cut(s) 78, 101, 498, 539, 950
DpnI GATC 6 cut(s) 93, 297, 367, 378, 422, 873
DpnII GATC 6 cut(s) 91, 295, 365, 376, 420, 871
Eam1104I CTCTTC 2 cut(s) 336, 981
EarI CTCTTC 2 cut(s) 336, 981
Eco130I CCWWGG 2 cut(s) 41, 457
Eco32I GATATC 1 cut(s) 766
Eco47I GGWCC 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 1018
EcoNI CCTNNNNNAGG 1 cut(s) 773
EcoRII CCWGG 2 cut(s) 768, 888
EcoRV GATATC 1 cut(s) 766
EcoT14I CCWWGG 2 cut(s) 41, 457
EcoT22I ATGCAT 1 cut(s) 813
ErhI CCWWGG 2 cut(s) 41, 457
FaeI CATG 5 cut(s) 210, 302, 461, 652, 694
FaqI GGGAC 1 cut(s) 906
FatI CATG 5 cut(s) 206, 298, 457, 648, 690
FbaI TGATCA 1 cut(s) 295
FblI GTMKAC 1 cut(s) 106
Fnu4HI GCNGC 2 cut(s) 866, 940
FokI GGATG 1 cut(s) 536
Fsp4HI GCNGC 2 cut(s) 866, 940
FspBI CTAG 1 cut(s) 140
GlaI GCGC 1 cut(s) 321
GluI GCNGC 2 cut(s) 866, 940
GsuI CTGGAG 1 cut(s) 259
HapII CCGG 2 cut(s) 596, 869
HgaI GACGC 2 cut(s) 43, 871
HhaI GCGC 1 cut(s) 322
Hin1I GRCGYC 1 cut(s) 54
Hin1II CATG 5 cut(s) 210, 302, 461, 652, 694
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HincII GTYRAC 1 cut(s) 107
HindII GTYRAC 1 cut(s) 107
HindIII AAGCTT 1 cut(s) 1010
HinfI GANTC 5 cut(s) 170, 399, 409, 448, 588
HpaII CCGG 2 cut(s) 596, 869
HphI GGTGA 1 cut(s) 845
Hpy166II GTNNAC 4 cut(s) 107, 153, 282, 1041
Hpy188I TCNGA 2 cut(s) 295, 523
Hpy188III TCNNGA 8 cut(s) 257, 299, 557, 585, 596, 802, 931, 1146
Hpy8I GTNNAC 4 cut(s) 107, 153, 282, 1041
Hpy99I CGWCG 4 cut(s) 59, 111, 862, 865
HpyAV CCTTC 3 cut(s) 300, 457, 928
HpyCH4III ACNGT 2 cut(s) 137, 737
HpyCH4V TGCA 6 cut(s) 201, 775, 792, 811, 880, 942
HpyF10VI GCNNNNNNNGC 2 cut(s) 659, 789
HpyF3I CTNAG 5 cut(s) 78, 101, 498, 539, 950
Hsp92I GRCGYC 1 cut(s) 54
Hsp92II CATG 5 cut(s) 210, 302, 461, 652, 694
HspAI GCGC 1 cut(s) 320
Kpn2I TCCGGA 1 cut(s) 595
Ksp22I TGATCA 1 cut(s) 295
Kzo9I GATC 6 cut(s) 91, 295, 365, 376, 420, 871
LmnI GCTCC 3 cut(s) 45, 292, 1054
Lsp1109I GCAGC 2 cut(s) 852, 926
LweI GCATC 2 cut(s) 514, 811
MaeI CTAG 1 cut(s) 140
MaeIII GTNAC 1 cut(s) 1028
MalI GATC 6 cut(s) 93, 297, 367, 378, 422, 873
MboI GATC 6 cut(s) 91, 295, 365, 376, 420, 871
MfeI CAATTG 1 cut(s) 852
MflI RGATCY 1 cut(s) 871
MhlI GDGCHC 1 cut(s) 1051
MluCI AATT 5 cut(s) 657, 754, 852, 903, 1114
MlyI GAGTC 2 cut(s) 179, 418
MmeI TCCRAC 1 cut(s) 142
Mph1103I ATGCAT 1 cut(s) 813
MroI TCCGGA 1 cut(s) 595
MseI TTAA 7 cut(s) 233, 306, 333, 632, 722, 884, 1097
MslI CAYNNNNRTG 2 cut(s) 80, 678
MspCI CTTAAG 1 cut(s) 631
MspI CCGG 2 cut(s) 596, 869
MspR9I CCNGG 2 cut(s) 770, 890
MunI CAATTG 1 cut(s) 852
Mva1269I GAATGC 2 cut(s) 580, 783
MvaI CCWGG 2 cut(s) 770, 890
MwoI GCNNNNNNNGC 2 cut(s) 659, 789
NcoI CCATGG 1 cut(s) 457
NdeII GATC 6 cut(s) 91, 295, 365, 376, 420, 871
NlaIII CATG 5 cut(s) 210, 302, 461, 652, 694
NlaIV GGNNCC 1 cut(s) 47
NsiI ATGCAT 1 cut(s) 813
NspI RCATGY 1 cut(s) 694
NspV TTCGAA 1 cut(s) 62
OliI CACNNNNGTG 1 cut(s) 678
PagI TCATGA 1 cut(s) 298
PasI CCCWGGG 1 cut(s) 889
PciI ACATGT 1 cut(s) 690
PctI GAATGC 2 cut(s) 580, 783
PfeI GAWTC 3 cut(s) 399, 448, 588
PkrI GCNGC 2 cut(s) 867, 941
PleI GAGTC 2 cut(s) 178, 417
PpsI GAGTC 2 cut(s) 178, 417
PscI ACATGT 1 cut(s) 690
PshBI ATTAAT 1 cut(s) 722
Psp6I CCWGG 2 cut(s) 768, 888
PspGI CCWGG 2 cut(s) 768, 888
PspN4I GGNNCC 1 cut(s) 47
PspPI GGNCC 1 cut(s) 85
PsuI RGATCY 1 cut(s) 871
RsaI GTAC 5 cut(s) 212, 315, 496, 751, 1042
RsaNI GTAC 5 cut(s) 211, 314, 495, 750, 1041
RseI CAYNNNNRTG 2 cut(s) 80, 678
SalI GTCGAC 1 cut(s) 105
SaqAI TTAA 7 cut(s) 233, 306, 333, 632, 722, 884, 1097
SatI GCNGC 2 cut(s) 866, 940
Sau3AI GATC 6 cut(s) 91, 295, 365, 376, 420, 871
Sau96I GGNCC 1 cut(s) 85
SchI GAGTC 2 cut(s) 179, 418
ScrFI CCNGG 2 cut(s) 770, 890
SduI GDGCHC 1 cut(s) 1051
SfaNI GCATC 2 cut(s) 514, 811
SfuI TTCGAA 1 cut(s) 62
SinI GGWCC 1 cut(s) 85
SmiMI CAYNNNNRTG 2 cut(s) 80, 678
SmlI CTYRAG 2 cut(s) 631, 800
SmoI CTYRAG 2 cut(s) 631, 800
Sse9I AATT 5 cut(s) 657, 754, 852, 903, 1114
SsiI CCGC 2 cut(s) 38, 533
SspI AATATT 1 cut(s) 1005
SspMI CTAG 1 cut(s) 140
StyD4I CCNGG 2 cut(s) 768, 888
StyI CCWWGG 2 cut(s) 41, 457
TaaI ACNGT 2 cut(s) 137, 737
TaqI TCGA 7 cut(s) 62, 106, 402, 419, 586, 705, 1074
TasI AATT 5 cut(s) 657, 754, 852, 903, 1114
TatI WGTACW 4 cut(s) 313, 494, 749, 1040
TfiI GAWTC 3 cut(s) 399, 448, 588
Tru1I TTAA 7 cut(s) 233, 306, 333, 632, 722, 884, 1097
Tru9I TTAA 7 cut(s) 233, 306, 333, 632, 722, 884, 1097
TscAI CASTG 2 cut(s) 82, 794
TseI GCWGC 2 cut(s) 865, 939
TspDTI ATGAA 3 cut(s) 38, 950, 1011
TspRI CASTG 2 cut(s) 82, 794
Vha464I CTTAAG 1 cut(s) 631
VpaK11BI GGWCC 1 cut(s) 85
VspI ATTAAT 1 cut(s) 722
XagI CCTNNNNNAGG 1 cut(s) 773
XapI RAATTY 2 cut(s) 754, 903
XceI RCATGY 1 cut(s) 694
XmiI GTMKAC 1 cut(s) 106
XspI CTAG 1 cut(s) 140
Zsp2I ATGCAT 1 cut(s) 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.