Rroxscaffold_6G00419620

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000886
Physical Location & Seq
Forward (+)
41021932 .. 41023032
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00419620.1

Sequence Viewer

Length: 1101 bp
ATGTTGAGACCTGATAAGAAGATGAAGCCGTCGTCAGATCCGTCGTCGCCACCATGGATCGACGGCATCGTTTCGAGTCATCACCACGATCAATCTCTCACTCGAAGATGGGAGGATTTAGAATTGGACTGTTTAGCAAATGTGTTTGCCAAAGTCGGAATGGAGTCGCTGCTTTTAGCTCTCCCTTTTGTCTGCAAATCATGGTACGCCGCATCTCTCAATCCCTTATGCTGGAAGTTTCTCTCTTTCCCAGATTTTGAGCCCTATCCTTTGTTCACTGGTATGCATGAAATCGATTTTGAAACCCGGAAATTTGGGCCCTTTTATGATAAGTTTATAAAAAAGTACCGAATTAGAAGGACTCGTTTCTCCATCACCGGTTTCATAAAACTGGTTGTCAGTCGTAGCAATGGGAAGGCTACTTATCTCAAGCTACCTGGATTTTGTAGCGAAGAGGCCTTGAGATATGTGTCGGAGGCGTGTCCTGAACTTAGGATGTTGTATTTGTGTGATGATTTAGTGATTTTCAAGCATACCCAAATCATATCTGAACTAATTGGGAAGTGGAAGTATTTGGAGCACTTAACTTTGGGAGGAAACTGTGGGCAAATTTTGAAGCAATACCGCGGCATTGGGGATTACTTGAGTAAAAATTTTGAGGCGTTAGCGTCATACAAATACAATAGCAATGAAACTTTGCATAAAATCCTGGTACAGATCGGCATTCACTGCAAGCATTTTAGGAGTCTGCATATCTTTGAAGCCCTTGTCGGTGAAGTTGAAGCATTGGCAATTGTGACTATGCTGCCGGATCTTACGCACTTAACCCTGGCACAATCTCGTATTGTACGAGATACTCTTTTCACGCTCTTGCGGGGCTGCAAGAAGCTTTGCTCATTTAATCTCTGGCATTGTGAAGGTTTTGAAGAGTGTGATGAAGAATTATTGAAGCTTGCTTCCCATATTAGCGAGTTCTGGTACAAAGGGGGTCCAAATGATTTTACCCGCTTGCATGAGTTGAAGAGGATTATTTTAACCATGTGTTTAAAGAATCAACTTTGGAGGAAGGGGAAGATTTTACTGGCAGAGTATTATCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

366

Amino Acids

42.6

Weight (kDa)

8.66

Isoelectric Point (pI)

44.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 338
AccII CGCG 1 cut(s) 627
AciI CCGC 5 cut(s) 210, 625, 627, 874, 1006
AclWI GGATC 3 cut(s) 32, 65, 819
AcsI RAATTY 3 cut(s) 311, 609, 652
AfaI GTAC 5 cut(s) 206, 347, 714, 849, 980
AfiI CCNNNNNNNGG 1 cut(s) 231
AgeI ACCGGT 1 cut(s) 377
AgsI TTSAA 8 cut(s) 302, 529, 616, 761, 782, 926, 949, 1021
AjnI CCWGG 3 cut(s) 436, 708, 828
AluBI AGCT 4 cut(s) 179, 433, 889, 952
AluI AGCT 4 cut(s) 179, 433, 889, 952
Alw21I GWGCWC 1 cut(s) 582
AlwI GGATC 3 cut(s) 32, 65, 819
AoxI GGCC 2 cut(s) 317, 456
ApaI GGGCCC 1 cut(s) 321
ApeKI GCWGC 3 cut(s) 169, 805, 879
ApoI RAATTY 3 cut(s) 311, 609, 652
AsiGI ACCGGT 1 cut(s) 377
AspS9I GGNCC 3 cut(s) 317, 318, 989
AsuC2I CCSGG 1 cut(s) 307
AsuHPI GGTGA 3 cut(s) 74, 367, 785
AvaII GGWCC 1 cut(s) 989
BaeGI GKGCMC 1 cut(s) 321
BanII GRGCYC 2 cut(s) 264, 321
Bbv12I GWGCWC 1 cut(s) 582
BbvI GCAGC 3 cut(s) 156, 792, 866
BccI CCATC 2 cut(s) 102, 380
BceAI ACGGC 2 cut(s) 13, 79
BciT130I CCWGG 3 cut(s) 438, 710, 830
BcnI CCSGG 1 cut(s) 307
BisI GCNGC 5 cut(s) 170, 210, 628, 806, 880
BlsI GCNGC 5 cut(s) 171, 211, 629, 807, 881
Bme1390I CCNGG 4 cut(s) 307, 438, 710, 830
Bme18I GGWCC 1 cut(s) 989
BmgT120I GGNCC 3 cut(s) 317, 318, 989
BmiI GGNNCC 2 cut(s) 319, 990
BmrFI CCNGG 4 cut(s) 307, 438, 710, 830
BmsI GCATC 2 cut(s) 75, 221
BpuEI CTTGAG 3 cut(s) 413, 481, 664
BpuMI CCSGG 1 cut(s) 307
Bsa29I ATCGAT 1 cut(s) 294
BsaJI CCNNGG 3 cut(s) 53, 625, 828
BsaWI WCCGGW 1 cut(s) 377
Bsc4I CCNNNNNNNGG 1 cut(s) 231
Bse118I RCCGGY 1 cut(s) 377
Bse1I ACTGG 3 cut(s) 283, 396, 1086
Bse3DI GCAATG 2 cut(s) 415, 694
BseBI CCWGG 3 cut(s) 438, 710, 830
BseCI ATCGAT 1 cut(s) 294
BseDI CCNNGG 3 cut(s) 53, 625, 828
BseGI GGATG 1 cut(s) 501
BseLI CCNNNNNNNGG 1 cut(s) 231
BseMI GCAATG 2 cut(s) 415, 694
BseNI ACTGG 3 cut(s) 283, 396, 1086
BseSI GKGCMC 1 cut(s) 321
BseXI GCAGC 3 cut(s) 156, 792, 866
Bsh1236I CGCG 1 cut(s) 627
BshFI GGCC 2 cut(s) 319, 458
BshTI ACCGGT 1 cut(s) 377
BshVI ATCGAT 1 cut(s) 294
BsiHKAI GWGCWC 1 cut(s) 582
BsiSI CCGG 3 cut(s) 307, 378, 809
BslI CCNNNNNNNGG 1 cut(s) 231
BsmI GAATGC 1 cut(s) 723
BsnI GGCC 2 cut(s) 319, 458
Bsp120I GGGCCC 1 cut(s) 317
Bsp1286I GDGCHC 3 cut(s) 264, 321, 582
Bsp143I GATC 5 cut(s) 37, 57, 88, 717, 811
Bsp19I CCATGG 1 cut(s) 53
BspACI CCGC 5 cut(s) 210, 625, 627, 874, 1006
BspANI GGCC 2 cut(s) 319, 458
BspDI ATCGAT 1 cut(s) 294
BspFNI CGCG 1 cut(s) 627
BspLI GGNNCC 2 cut(s) 319, 990
BspPI GGATC 3 cut(s) 32, 65, 819
BsrDI GCAATG 2 cut(s) 415, 694
BsrFI RCCGGY 1 cut(s) 377
BsrI ACTGG 3 cut(s) 283, 396, 1086
BssAI RCCGGY 1 cut(s) 377
BssECI CCNNGG 3 cut(s) 53, 625, 828
BssMI GATC 5 cut(s) 37, 57, 88, 717, 811
BssT1I CCWWGG 1 cut(s) 53
Bst2UI CCWGG 3 cut(s) 438, 710, 830
Bst4CI ACNGT 2 cut(s) 131, 602
Bst6I CTCTTC 3 cut(s) 447, 921, 1016
BstAPI GCANNNNNTGC 1 cut(s) 729
BstC8I GCNNGC 3 cut(s) 734, 954, 1010
BstDEI CTNAG 1 cut(s) 491
BstDSI CCRYGG 2 cut(s) 53, 625
BstF5I GGATG 1 cut(s) 501
BstFNI CGCG 1 cut(s) 627
BstKTI GATC 5 cut(s) 40, 60, 91, 720, 814
BstMBI GATC 5 cut(s) 37, 57, 88, 717, 811
BstMWI GCNNNNNNNGC 1 cut(s) 729
BstNI CCWGG 3 cut(s) 438, 710, 830
BstSCI CCNGG 4 cut(s) 305, 436, 708, 828
BstSLI GKGCMC 1 cut(s) 321
BstUI CGCG 1 cut(s) 627
BstV1I GCAGC 3 cut(s) 156, 792, 866
BstX2I RGATCY 2 cut(s) 37, 811
BstYI RGATCY 2 cut(s) 37, 811
Bsu15I ATCGAT 1 cut(s) 294
BsuRI GGCC 2 cut(s) 319, 458
BsuTUI ATCGAT 1 cut(s) 294
BtgI CCRYGG 2 cut(s) 53, 625
BtsCI GGATG 1 cut(s) 501
BtsI GCAGTG 1 cut(s) 727
BtsIMutI CAGTG 2 cut(s) 276, 727
Cac8I GCNNGC 3 cut(s) 734, 954, 1010
Cfr10I RCCGGY 1 cut(s) 377
Cfr13I GGNCC 3 cut(s) 317, 318, 989
Cfr42I CCGCGG 1 cut(s) 628
ClaI ATCGAT 1 cut(s) 294
CseI GACGC 1 cut(s) 657
Csp6I GTAC 5 cut(s) 205, 346, 713, 848, 979
CspAI ACCGGT 1 cut(s) 377
CviAII CATG 5 cut(s) 54, 201, 287, 1013, 1039
CviQI GTAC 5 cut(s) 205, 346, 713, 848, 979
DdeI CTNAG 1 cut(s) 491
DpnI GATC 5 cut(s) 39, 59, 90, 719, 813
DpnII GATC 5 cut(s) 37, 57, 88, 717, 811
DraI TTTAAA 1 cut(s) 1047
Eam1104I CTCTTC 3 cut(s) 447, 921, 1016
EarI CTCTTC 3 cut(s) 447, 921, 1016
Eco130I CCWWGG 1 cut(s) 53
Eco147I AGGCCT 1 cut(s) 458
Eco24I GRGCYC 2 cut(s) 264, 321
Eco47I GGWCC 1 cut(s) 989
EcoO109I RGGNCCY 1 cut(s) 318
EcoRII CCWGG 3 cut(s) 436, 708, 828
EcoT14I CCWWGG 1 cut(s) 53
EcoT22I ATGCAT 1 cut(s) 288
EcoT38I GRGCYC 2 cut(s) 264, 321
ErhI CCWWGG 1 cut(s) 53
FaeI CATG 5 cut(s) 57, 204, 290, 1016, 1042
FatI CATG 5 cut(s) 53, 200, 286, 1012, 1038
FauI CCCGC 2 cut(s) 867, 1013
Fnu4HI GCNGC 5 cut(s) 170, 210, 628, 806, 880
FokI GGATG 1 cut(s) 508
FriOI GRGCYC 2 cut(s) 264, 321
Fsp4HI GCNGC 5 cut(s) 170, 210, 628, 806, 880
GluI GCNGC 5 cut(s) 170, 210, 628, 806, 880
HaeIII GGCC 2 cut(s) 319, 458
HapII CCGG 3 cut(s) 307, 378, 809
HgaI GACGC 1 cut(s) 657
Hin1II CATG 5 cut(s) 57, 204, 290, 1016, 1042
HindIII AAGCTT 2 cut(s) 887, 950
HinfI GANTC 5 cut(s) 76, 164, 361, 745, 1051
HpaII CCGG 3 cut(s) 307, 378, 809
HphI GGTGA 3 cut(s) 74, 367, 785
Hpy166II GTNNAC 1 cut(s) 276
Hpy188I TCNGA 4 cut(s) 37, 158, 475, 550
Hpy188III TCNNGA 1 cut(s) 485
Hpy8I GTNNAC 1 cut(s) 276
Hpy99I CGWCG 4 cut(s) 34, 46, 49, 65
HpyAV CCTTC 4 cut(s) 351, 409, 911, 1060
HpyCH4III ACNGT 2 cut(s) 131, 602
HpyCH4V TGCA 7 cut(s) 195, 286, 700, 732, 751, 882, 1012
HpyF10VI GCNNNNNNNGC 1 cut(s) 729
HpyF3I CTNAG 1 cut(s) 491
Hsp92II CATG 5 cut(s) 57, 204, 290, 1016, 1042
KspI CCGCGG 1 cut(s) 628
Kzo9I GATC 5 cut(s) 37, 57, 88, 717, 811
LmnI GCTCC 1 cut(s) 577
Lsp1109I GCAGC 3 cut(s) 156, 792, 866
LweI GCATC 2 cut(s) 75, 221
MaeIII GTNAC 1 cut(s) 796
MalI GATC 5 cut(s) 39, 59, 90, 719, 813
MboI GATC 5 cut(s) 37, 57, 88, 717, 811
MboII GAAGA 7 cut(s) 31, 117, 464, 938, 950, 1033, 1084
MfeI CAATTG 1 cut(s) 792
MflI RGATCY 2 cut(s) 37, 811
MhlI GDGCHC 3 cut(s) 264, 321, 582
MluCI AATT 8 cut(s) 122, 311, 351, 555, 609, 652, 792, 941
MlyI GAGTC 4 cut(s) 85, 173, 355, 754
MmeI TCCRAC 2 cut(s) 136, 453
MnlI CCTC 7 cut(s) 106, 448, 469, 587, 652, 1017, 1056
Mph1103I ATGCAT 1 cut(s) 288
MseI TTAA 5 cut(s) 584, 824, 900, 1034, 1046
MslI CAYNNNNRTG 1 cut(s) 281
MspA1I CMGCKG 1 cut(s) 627
MspI CCGG 3 cut(s) 307, 378, 809
MspR9I CCNGG 4 cut(s) 307, 438, 710, 830
MunI CAATTG 1 cut(s) 792
Mva1269I GAATGC 1 cut(s) 723
MvaI CCWGG 3 cut(s) 438, 710, 830
MvnI CGCG 1 cut(s) 627
MwoI GCNNNNNNNGC 1 cut(s) 729
NciI CCSGG 1 cut(s) 307
NcoI CCATGG 1 cut(s) 53
NdeII GATC 5 cut(s) 37, 57, 88, 717, 811
NlaIII CATG 5 cut(s) 57, 204, 290, 1016, 1042
NlaIV GGNNCC 2 cut(s) 319, 990
NmuCI GTSAC 1 cut(s) 796
NsiI ATGCAT 1 cut(s) 288
PceI AGGCCT 1 cut(s) 458
PcsI WCGNNNNNNNCGW 3 cut(s) 38, 66, 847
PctI GAATGC 1 cut(s) 723
PfeI GAWTC 1 cut(s) 1051
PinAI ACCGGT 1 cut(s) 377
PkrI GCNGC 5 cut(s) 171, 211, 629, 807, 881
PleI GAGTC 4 cut(s) 84, 172, 355, 753
PpsI GAGTC 4 cut(s) 84, 172, 355, 753
PsiI TTATAA 1 cut(s) 338
Psp6I CCWGG 3 cut(s) 436, 708, 828
PspGI CCWGG 3 cut(s) 436, 708, 828
PspN4I GGNNCC 2 cut(s) 319, 990
PspOMI GGGCCC 1 cut(s) 317
PspPI GGNCC 3 cut(s) 317, 318, 989
PsuI RGATCY 2 cut(s) 37, 811
RsaI GTAC 5 cut(s) 206, 347, 714, 849, 980
RsaNI GTAC 5 cut(s) 205, 346, 713, 848, 979
RseI CAYNNNNRTG 1 cut(s) 281
SacII CCGCGG 1 cut(s) 628
SaqAI TTAA 5 cut(s) 584, 824, 900, 1034, 1046
SatI GCNGC 5 cut(s) 170, 210, 628, 806, 880
Sau3AI GATC 5 cut(s) 37, 57, 88, 717, 811
Sau96I GGNCC 3 cut(s) 317, 318, 989
SchI GAGTC 4 cut(s) 85, 173, 355, 754
ScrFI CCNGG 4 cut(s) 307, 438, 710, 830
SduI GDGCHC 3 cut(s) 264, 321, 582
SetI ASST 7 cut(s) 13, 181, 435, 439, 891, 922, 954
SfaNI GCATC 2 cut(s) 75, 221
Sfr303I CCGCGG 1 cut(s) 628
SgrBI CCGCGG 1 cut(s) 628
SinI GGWCC 1 cut(s) 989
SmiMI CAYNNNNRTG 1 cut(s) 281
SmlI CTYRAG 3 cut(s) 428, 460, 643
SmoI CTYRAG 3 cut(s) 428, 460, 643
Sse9I AATT 8 cut(s) 122, 311, 351, 555, 609, 652, 792, 941
SseBI AGGCCT 1 cut(s) 458
SsiI CCGC 5 cut(s) 210, 625, 627, 874, 1006
StuI AGGCCT 1 cut(s) 458
StyD4I CCNGG 4 cut(s) 305, 436, 708, 828
StyI CCWWGG 1 cut(s) 53
TaaI ACNGT 2 cut(s) 131, 602
TaqI TCGA 4 cut(s) 60, 74, 103, 294
TasI AATT 8 cut(s) 122, 311, 351, 555, 609, 652, 792, 941
TauI GCSGC 2 cut(s) 212, 630
TfiI GAWTC 1 cut(s) 1051
Tru1I TTAA 5 cut(s) 584, 824, 900, 1034, 1046
Tru9I TTAA 5 cut(s) 584, 824, 900, 1034, 1046
TscAI CASTG 2 cut(s) 283, 734
TseFI GTSAC 1 cut(s) 796
TseI GCWGC 3 cut(s) 169, 805, 879
Tsp45I GTSAC 1 cut(s) 796
TspDTI ATGAA 5 cut(s) 38, 303, 373, 705, 951
TspGWI ACGGA 1 cut(s) 30
TspRI CASTG 2 cut(s) 283, 734
VpaK11BI GGWCC 1 cut(s) 989
XapI RAATTY 3 cut(s) 311, 609, 652
XcmI CCANNNNNNNNNTGG 1 cut(s) 157
Zsp2I ATGCAT 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.