Rroxscaffold_6G00405110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000886
Physical Location & Seq
Forward (+)
27567110 .. 27568120
1011 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00405110.1

Sequence Viewer

Length: 1011 bp
ATGGAAGATGAGGGAATCAGAATCAAAAGATGGAAGGATTTAGAGACGGACTGTTTGACTCGTGTGCTTTCTAAAGTTGGAATGGAGTCTTTGCTTCTGACAGTTCCTTTCGTCTGTAAATCATGGTATGTTACAAGTCTCAATCCCTTGTGCTTTCAAAGCCTCATATTTCCAGACTTTATGCCTTTTCCTCTGTTCACGTATTCTAATAATAGTAAGGAACCTCCTCGGAGTTTTGGTCCCTTTTATGATAAGTTTATAGACGAGTATGGCATTGATAAGACTCGTTTCTCGATCACTGCATTTGTGAAGTTTGTCGTCAATCGTAGCAATGGATTAGCTATTCAACTTAAGCTACCAGAATTCTGTACCAAAGAAGGATTGATGTTTGTTTCGGACGCATGCCCTCTTCTTAAGAATGTATGGTTACCAGATGATTTGGTGATTTTCAAAACTTCTCACATTGTTTCACAGTTGATTAGGAAGTGGAAATTTTTGGAGAGCTTGATTTTGGGGTTTGGGATGTTGAACATCATGAACCAGTATGAAATGGATGGTAGGCCTAAGTTTTTGAGTGAACATTTCAATAAGTTATTGACAATGAAAGGTTTCTTCTCCCCTAATGCTTTGGATGCAATTTTAGTCCAGATTGGCACTCATTGCAAGCATTTTACGGATTTAATGGTTTATCATAGTCTTGGTGAAGTTGAGGCCTCAAGGATTGTGAAGTCACTGCCAAAACTTAAGAAGTTGGTCTTGAGTAATTGTCACATTAATCGGGACAGTGTTGTTACTGTACTGAGGGGGTGCAAAGAGCTTGTACTTTTTATTGCCGATCAATGTGAAGGCTTTGAAGGGAGTGATGAAGAAATATCAAAATTTGGTTCTCAGATTATGAACTTTTCGTGTCAGGATTGTGTAGGCAGTGATTTGTTATTGACTTTTTTCAAACTTATTAATGTACATAGGAGGTTAGTTTCCATAATGTTCTTAATGTATATGGGAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

336

Amino Acids

38.58

Weight (kDa)

7.95

Isoelectric Point (pI)

39.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 362, 491, 878
AfaI GTAC 4 cut(s) 370, 798, 822, 963
AflII CTTAAG 3 cut(s) 350, 413, 743
AgsI TTSAA 7 cut(s) 158, 347, 451, 529, 586, 854, 949
AluBI AGCT 4 cut(s) 341, 355, 504, 817
AluI AGCT 4 cut(s) 341, 355, 504, 817
Alw26I GTCTC 2 cut(s) 38, 143
AoxI GGCC 2 cut(s) 560, 711
ApoI RAATTY 3 cut(s) 362, 491, 878
ArsI GACNNNNNNTTYG 2 cut(s) 37, 69
AseI ATTAAT 2 cut(s) 774, 957
Asp700I GAANNNNTTC 1 cut(s) 608
AspS9I GGNCC 1 cut(s) 239
AsuHPI GGTGA 2 cut(s) 454, 713
AvaII GGWCC 1 cut(s) 239
BauI CACGAG 1 cut(s) 60
BccI CCATC 2 cut(s) 24, 548
BcoDI GTCTC 2 cut(s) 38, 143
BfrI CTTAAG 3 cut(s) 350, 413, 743
Bme18I GGWCC 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 239
BmiI GGNNCC 2 cut(s) 222, 241
BmsI GCATC 1 cut(s) 622
BpuEI CTTGAG 2 cut(s) 700, 778
BsaAI YACGTR 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 227
BsaXI ACNNNNNCTCC 2 cut(s) 223, 253
Bse1I ACTGG 1 cut(s) 541
Bse3DI GCAATG 2 cut(s) 337, 658
BseDI CCNNGG 1 cut(s) 227
BseGI GGATG 3 cut(s) 528, 559, 637
BseMI GCAATG 2 cut(s) 337, 658
BseMII CTCAG 2 cut(s) 791, 902
BseNI ACTGG 1 cut(s) 541
BseRI GAGGAG 1 cut(s) 216
BshFI GGCC 2 cut(s) 562, 713
BslFI GGGAC 2 cut(s) 225, 794
BsmAI GTCTC 2 cut(s) 38, 143
BsmBI CGTCTC 1 cut(s) 38
BsmFI GGGAC 2 cut(s) 225, 794
BsnI GGCC 2 cut(s) 562, 713
Bsp1407I TGTACA 1 cut(s) 961
Bsp143I GATC 2 cut(s) 294, 835
BspANI GGCC 2 cut(s) 562, 713
BspCNI CTCAG 2 cut(s) 792, 901
BspHI TCATGA 1 cut(s) 534
BspLI GGNNCC 2 cut(s) 222, 241
BspTI CTTAAG 3 cut(s) 350, 413, 743
BsrDI GCAATG 2 cut(s) 337, 658
BsrGI TGTACA 1 cut(s) 961
BsrI ACTGG 1 cut(s) 541
BssECI CCNNGG 1 cut(s) 227
BssMI GATC 2 cut(s) 294, 835
BssSI CACGAG 1 cut(s) 60
Bst2BI CACGAG 1 cut(s) 60
Bst4CI ACNGT 5 cut(s) 53, 103, 474, 785, 796
Bst6I CTCTTC 1 cut(s) 414
BstAFI CTTAAG 3 cut(s) 350, 413, 743
BstAPI GCANNNNNTGC 1 cut(s) 660
BstAUI TGTACA 1 cut(s) 961
BstBAI YACGTR 1 cut(s) 201
BstC8I GCNNGC 2 cut(s) 403, 665
BstDEI CTNAG 3 cut(s) 564, 800, 888
BstEII GGTNACC 1 cut(s) 426
BstF5I GGATG 3 cut(s) 528, 559, 637
BstKTI GATC 2 cut(s) 297, 838
BstMAI GTCTC 2 cut(s) 38, 143
BstMBI GATC 2 cut(s) 294, 835
BstMWI GCNNNNNNNGC 3 cut(s) 159, 632, 660
BstNSI RCATGY 1 cut(s) 405
BstPI GGTNACC 1 cut(s) 426
BsuRI GGCC 2 cut(s) 562, 713
BtsCI GGATG 3 cut(s) 528, 559, 637
BtsI GCAGTG 3 cut(s) 297, 731, 931
BtsIMutI CAGTG 4 cut(s) 297, 731, 790, 931
Cac8I GCNNGC 2 cut(s) 403, 665
CciI TCATGA 1 cut(s) 534
Cfr13I GGNCC 1 cut(s) 239
CseI GACGC 1 cut(s) 407
Csp6I GTAC 4 cut(s) 369, 797, 821, 962
CviAII CATG 3 cut(s) 123, 402, 535
CviJI RGCY 8 cut(s) 162, 341, 355, 504, 562, 713, 817, 849
CviKI_1 RGCY 8 cut(s) 162, 341, 355, 504, 562, 713, 817, 849
CviQI GTAC 4 cut(s) 369, 797, 821, 962
DdeI CTNAG 3 cut(s) 564, 800, 888
DpnI GATC 2 cut(s) 296, 837
DpnII GATC 2 cut(s) 294, 835
Eam1104I CTCTTC 1 cut(s) 414
EarI CTCTTC 1 cut(s) 414
Eco147I AGGCCT 2 cut(s) 562, 713
Eco47I GGWCC 1 cut(s) 239
Eco91I GGTNACC 1 cut(s) 426
EcoO65I GGTNACC 1 cut(s) 426
EcoRI GAATTC 1 cut(s) 362
Esp3I CGTCTC 1 cut(s) 38
FaeI CATG 3 cut(s) 126, 405, 538
FalI AAGNNNNNCTT 2 cut(s) 740, 772
FaqI GGGAC 2 cut(s) 225, 794
FatI CATG 3 cut(s) 122, 401, 534
FokI GGATG 3 cut(s) 535, 566, 644
HaeIII GGCC 2 cut(s) 562, 713
HgaI GACGC 1 cut(s) 407
Hin1II CATG 3 cut(s) 126, 405, 538
HinfI GANTC 5 cut(s) 15, 21, 58, 86, 283
HphI GGTGA 2 cut(s) 454, 713
Hpy166II GTNNAC 2 cut(s) 198, 578
Hpy188I TCNGA 5 cut(s) 20, 99, 231, 397, 891
Hpy188III TCNNGA 7 cut(s) 173, 292, 535, 646, 757, 779, 911
Hpy8I GTNNAC 2 cut(s) 198, 578
HpyAV CCTTC 4 cut(s) 28, 371, 839, 848
HpyCH4III ACNGT 5 cut(s) 53, 103, 474, 785, 796
HpyCH4IV ACGT 1 cut(s) 200
HpyCH4V TGCA 4 cut(s) 302, 635, 663, 810
HpyF10VI GCNNNNNNNGC 3 cut(s) 159, 632, 660
HpyF3I CTNAG 3 cut(s) 564, 800, 888
HpySE526I ACGT 1 cut(s) 200
Hsp92II CATG 3 cut(s) 126, 405, 538
Kzo9I GATC 2 cut(s) 294, 835
LpnPI CCDG 6 cut(s) 186, 372, 444, 554, 659, 896
LweI GCATC 1 cut(s) 622
MaeII ACGT 1 cut(s) 200
MaeIII GTNAC 5 cut(s) 130, 426, 729, 767, 790
MalI GATC 2 cut(s) 296, 837
MboI GATC 2 cut(s) 294, 835
MboII GAAGA 4 cut(s) 17, 401, 604, 878
MluCI AATT 5 cut(s) 362, 491, 636, 763, 878
MlyI GAGTC 3 cut(s) 52, 95, 277
MmeI TCCRAC 1 cut(s) 58
MroXI GAANNNNTTC 1 cut(s) 608
MseI TTAA 7 cut(s) 351, 414, 680, 744, 774, 957, 992
MspCI CTTAAG 3 cut(s) 350, 413, 743
MwoI GCNNNNNNNGC 3 cut(s) 159, 632, 660
NdeII GATC 2 cut(s) 294, 835
NlaIII CATG 3 cut(s) 126, 405, 538
NlaIV GGNNCC 2 cut(s) 222, 241
NmuCI GTSAC 2 cut(s) 729, 767
NspI RCATGY 1 cut(s) 405
PaeI GCATGC 1 cut(s) 405
PagI TCATGA 1 cut(s) 534
PceI AGGCCT 2 cut(s) 562, 713
PdmI GAANNNNTTC 1 cut(s) 608
PfeI GAWTC 2 cut(s) 15, 21
PleI GAGTC 3 cut(s) 52, 94, 277
PpsI GAGTC 3 cut(s) 52, 94, 277
Ppu21I YACGTR 1 cut(s) 201
PshBI ATTAAT 2 cut(s) 774, 957
PspEI GGTNACC 1 cut(s) 426
PspN4I GGNNCC 2 cut(s) 222, 241
PspPI GGNCC 1 cut(s) 239
RsaI GTAC 4 cut(s) 370, 798, 822, 963
RsaNI GTAC 4 cut(s) 369, 797, 821, 962
SaqAI TTAA 7 cut(s) 351, 414, 680, 744, 774, 957, 992
Sau3AI GATC 2 cut(s) 294, 835
Sau96I GGNCC 1 cut(s) 239
SchI GAGTC 3 cut(s) 52, 95, 277
SetI ASST 8 cut(s) 203, 226, 343, 357, 506, 610, 819, 974
SfaNI GCATC 1 cut(s) 622
SinI GGWCC 1 cut(s) 239
SmlI CTYRAG 5 cut(s) 350, 413, 715, 743, 757
SmoI CTYRAG 5 cut(s) 350, 413, 715, 743, 757
SphI GCATGC 1 cut(s) 405
Sse9I AATT 5 cut(s) 362, 491, 636, 763, 878
SseBI AGGCCT 2 cut(s) 562, 713
StuI AGGCCT 2 cut(s) 562, 713
TaaI ACNGT 5 cut(s) 53, 103, 474, 785, 796
TaiI ACGT 1 cut(s) 203
TaqI TCGA 1 cut(s) 293
TasI AATT 5 cut(s) 362, 491, 636, 763, 878
TatI WGTACW 3 cut(s) 796, 820, 961
TfiI GAWTC 2 cut(s) 15, 21
Tru1I TTAA 7 cut(s) 351, 414, 680, 744, 774, 957, 992
Tru9I TTAA 7 cut(s) 351, 414, 680, 744, 774, 957, 992
TscAI CASTG 4 cut(s) 304, 738, 790, 931
TseFI GTSAC 2 cut(s) 729, 767
Tsp45I GTSAC 2 cut(s) 729, 767
TspDTI ATGAA 5 cut(s) 551, 561, 617, 879, 911
TspGWI ACGGA 2 cut(s) 62, 689
TspRI CASTG 4 cut(s) 304, 738, 790, 931
Vha464I CTTAAG 3 cut(s) 350, 413, 743
VpaK11BI GGWCC 1 cut(s) 239
VspI ATTAAT 2 cut(s) 774, 957
XapI RAATTY 3 cut(s) 362, 491, 878
XceI RCATGY 1 cut(s) 405
XmnI GAANNNNTTC 1 cut(s) 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.