Rmu_sc0000449.1_g000009

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000449.1
OG0000886
Physical Location & Seq
Forward (+)
39644 .. 40630
987 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000449.1_g000009.1.cds

Sequence Viewer

Length: 987 bp
atggagtctttgctcttggctgttccttatgtatgcaaatcatggtacgcaactactctcaatcctttaagctggaggcttctctcttttccagactttgagccttatcctctgtttactgctccttctgatcatgatgttaatgttgtacttgcgcctgatgatattaacatagaagaggttgaacccaagtcttttggatcgttttacgatcagtttgtagaagaatatggattcgataggagtcgtttttcgatcacagcttttgtaaaaaatgtagtgaatcgtagccatggaaaggctatttatgtcaagctacctacattttgtactgaggaagcgttgagatatgtctcggatgcttgtccgcaacttaggggttttcgttttcctgatgatttagcgatgttcaagcattctcgaatcattccggaagttattgggaaatggaagtcgttgaagcacttaagtttgggaggaagcatggcaggaattgctatacaataccacagaagtggggaatacatgtgtaaagatttcgaggcgttgttgtcattaatcaactatgacagtccaaacagcagtacaaatttgtatgatatcctggtgcaggttggcattcactgcaagaacctcaagagtttgcatatttttgatgcccttgttggtgaagttgaggcattgacaattgcgacgacgctgccggatcttatgcacttaaccctgggacaatctcaaattcagcgagatagtcttgttattctcttgaagggctgcaaaaagctgattagctttcatcttgggtattgcgatggttttgaagagtgtgatgaagaaatattgaagcttgtttcccatatcagtgactttaggtgtacaggtgctccaagtagattttatactcgcttcgatgtgttgaagaagattgttttaacaatgggtataaggaattatgtttggaggaaaaggaagataatatcgggatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

328

Amino Acids

37.36

Weight (kDa)

6.55

Isoelectric Point (pI)

51.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 601
AccIII TCCGGA 1 cut(s) 430
AciI CCGC 1 cut(s) 368
AclWI GGATC 2 cut(s) 208, 714
AcsI RAATTY 2 cut(s) 589, 738
AfaI GTAC 5 cut(s) 47, 150, 331, 586, 877
AfiI CCNNNNNNNGG 2 cut(s) 298, 610
AflII CTTAAG 1 cut(s) 466
AflIII ACRYGT 1 cut(s) 525
AgsI TTSAA 7 cut(s) 185, 412, 460, 769, 821, 844, 919
AjnI CCWGG 2 cut(s) 603, 723
AleI CACNNNNGTG 1 cut(s) 513
AluBI AGCT 6 cut(s) 72, 263, 316, 784, 792, 847
AluI AGCT 6 cut(s) 72, 263, 316, 784, 792, 847
Alw21I GWGCWC 1 cut(s) 886
Alw26I GTCTC 1 cut(s) 358
AlwI GGATC 2 cut(s) 208, 714
Aor13HI TCCGGA 1 cut(s) 430
ApeKI GCWGC 2 cut(s) 700, 774
ApoI RAATTY 2 cut(s) 589, 738
AseI ATTAAT 1 cut(s) 557
AspLEI GCGC 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 680
Bbv12I GWGCWC 1 cut(s) 886
BbvI GCAGC 2 cut(s) 687, 761
BccI CCATC 1 cut(s) 806
BcgI CGANNNNNNTGC 2 cut(s) 682, 716
BciT130I CCWGG 2 cut(s) 605, 725
BclI TGATCA 1 cut(s) 130
BcoDI GTCTC 1 cut(s) 358
BfrI CTTAAG 1 cut(s) 466
BfuAI ACCTGC 1 cut(s) 601
BisI GCNGC 2 cut(s) 701, 775
BlsI GCNGC 2 cut(s) 702, 776
Bme1390I CCNGG 2 cut(s) 605, 725
BmrFI CCNGG 2 cut(s) 605, 725
BmsI GCATC 2 cut(s) 349, 646
BpmI CTGGAG 1 cut(s) 94
BpuEI CTTGAG 1 cut(s) 620
BsaJI CCNNGG 3 cut(s) 292, 723, 724
BsaWI WCCGGW 1 cut(s) 430
BsaXI ACNNNNNCTCC 2 cut(s) 868, 898
Bsc4I CCNNNNNNNGG 2 cut(s) 298, 610
BseAI TCCGGA 1 cut(s) 430
BseBI CCWGG 2 cut(s) 605, 725
BseDI CCNNGG 3 cut(s) 292, 723, 724
BseGI GGATG 1 cut(s) 364
BseLI CCNNNNNNNGG 2 cut(s) 298, 610
BseMII CTCAG 1 cut(s) 324
BseXI GCAGC 2 cut(s) 687, 761
BsgI GTGCAG 1 cut(s) 629
BsiHKAI GWGCWC 1 cut(s) 886
BsiSI CCGG 2 cut(s) 431, 704
BslFI GGGAC 1 cut(s) 741
BslI CCNNNNNNNGG 2 cut(s) 298, 610
BsmAI GTCTC 1 cut(s) 358
BsmFI GGGAC 1 cut(s) 741
BsmI GAATGC 2 cut(s) 415, 618
Bsp1286I GDGCHC 1 cut(s) 886
Bsp13I TCCGGA 1 cut(s) 430
Bsp1407I TGTACA 1 cut(s) 875
Bsp143I GATC 5 cut(s) 130, 200, 211, 255, 706
Bsp19I CCATGG 1 cut(s) 292
BspACI CCGC 1 cut(s) 368
BspCNI CTCAG 1 cut(s) 325
BspEI TCCGGA 1 cut(s) 430
BspHI TCATGA 1 cut(s) 133
BspMI ACCTGC 1 cut(s) 601
BspPI GGATC 2 cut(s) 208, 714
BspTI CTTAAG 1 cut(s) 466
BsrGI TGTACA 1 cut(s) 875
BssECI CCNNGG 3 cut(s) 292, 723, 724
BssMI GATC 5 cut(s) 130, 200, 211, 255, 706
BssT1I CCWWGG 1 cut(s) 292
Bst2UI CCWGG 2 cut(s) 605, 725
Bst4CI ACNGT 1 cut(s) 572
Bst6I CTCTTC 2 cut(s) 171, 816
BstAFI CTTAAG 1 cut(s) 466
BstAPI GCANNNNNTGC 2 cut(s) 494, 624
BstAUI TGTACA 1 cut(s) 875
BstDEI CTNAG 2 cut(s) 333, 374
BstDSI CCRYGG 1 cut(s) 292
BstENI CCTNNNNNAGG 1 cut(s) 608
BstF5I GGATG 1 cut(s) 364
BstHHI GCGC 1 cut(s) 157
BstKTI GATC 5 cut(s) 133, 203, 214, 258, 709
BstMAI GTCTC 1 cut(s) 358
BstMBI GATC 5 cut(s) 130, 200, 211, 255, 706
BstMWI GCNNNNNNNGC 2 cut(s) 494, 624
BstNI CCWGG 2 cut(s) 605, 725
BstNSI RCATGY 1 cut(s) 529
BstSCI CCNGG 2 cut(s) 603, 723
BstV1I GCAGC 2 cut(s) 687, 761
BstX2I RGATCY 1 cut(s) 706
BstXI CCANNNNNNTGG 1 cut(s) 515
BstYI RGATCY 1 cut(s) 706
BtgI CCRYGG 1 cut(s) 292
BtgZI GCGATG 2 cut(s) 419, 825
BtsCI GGATG 1 cut(s) 364
BtsI GCAGTG 1 cut(s) 622
BtsIMutI CAGTG 2 cut(s) 622, 868
BveI ACCTGC 1 cut(s) 601
CciI TCATGA 1 cut(s) 133
CfoI GCGC 1 cut(s) 157
CseI GACGC 1 cut(s) 706
Csp6I GTAC 5 cut(s) 46, 149, 330, 585, 876
CviAII CATG 5 cut(s) 42, 134, 293, 484, 526
CviQI GTAC 5 cut(s) 46, 149, 330, 585, 876
DdeI CTNAG 2 cut(s) 333, 374
DpnI GATC 5 cut(s) 132, 202, 213, 257, 708
DpnII GATC 5 cut(s) 130, 200, 211, 255, 706
Eam1104I CTCTTC 2 cut(s) 171, 816
EarI CTCTTC 2 cut(s) 171, 816
Eco130I CCWWGG 1 cut(s) 292
Eco32I GATATC 1 cut(s) 601
EcoNI CCTNNNNNAGG 1 cut(s) 608
EcoRII CCWGG 2 cut(s) 603, 723
EcoRV GATATC 1 cut(s) 601
EcoT14I CCWWGG 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 292
FaeI CATG 5 cut(s) 45, 137, 296, 487, 529
FaqI GGGAC 1 cut(s) 741
FatI CATG 5 cut(s) 41, 133, 292, 483, 525
FbaI TGATCA 1 cut(s) 130
Fnu4HI GCNGC 2 cut(s) 701, 775
FokI GGATG 1 cut(s) 371
Fsp4HI GCNGC 2 cut(s) 701, 775
GlaI GCGC 1 cut(s) 156
GluI GCNGC 2 cut(s) 701, 775
GsuI CTGGAG 1 cut(s) 94
HapII CCGG 2 cut(s) 431, 704
HgaI GACGC 1 cut(s) 706
HhaI GCGC 1 cut(s) 157
Hin1II CATG 5 cut(s) 45, 137, 296, 487, 529
Hin6I GCGC 1 cut(s) 155
HinP1I GCGC 1 cut(s) 155
HindIII AAGCTT 1 cut(s) 845
HinfI GANTC 5 cut(s) 5, 234, 244, 283, 423
HpaII CCGG 2 cut(s) 431, 704
HphI GGTGA 1 cut(s) 680
Hpy166II GTNNAC 2 cut(s) 117, 876
Hpy188I TCNGA 2 cut(s) 130, 358
Hpy188III TCNNGA 8 cut(s) 92, 134, 392, 420, 431, 637, 766, 981
Hpy8I GTNNAC 2 cut(s) 117, 876
Hpy99I CGWCG 2 cut(s) 697, 700
HpyAV CCTTC 2 cut(s) 135, 763
HpyCH4III ACNGT 1 cut(s) 572
HpyCH4V TGCA 6 cut(s) 36, 610, 627, 646, 715, 777
HpyF10VI GCNNNNNNNGC 2 cut(s) 494, 624
HpyF3I CTNAG 2 cut(s) 333, 374
Hsp92II CATG 5 cut(s) 45, 137, 296, 487, 529
HspAI GCGC 1 cut(s) 155
Kpn2I TCCGGA 1 cut(s) 430
Ksp22I TGATCA 1 cut(s) 130
Kzo9I GATC 5 cut(s) 130, 200, 211, 255, 706
LmnI GCTCC 2 cut(s) 127, 889
Lsp1109I GCAGC 2 cut(s) 687, 761
LweI GCATC 2 cut(s) 349, 646
MaeIII GTNAC 1 cut(s) 863
MalI GATC 5 cut(s) 132, 202, 213, 257, 708
MboI GATC 5 cut(s) 130, 200, 211, 255, 706
MboII GAAGA 7 cut(s) 188, 236, 833, 845, 931, 934, 982
MfeI CAATTG 1 cut(s) 687
MflI RGATCY 1 cut(s) 706
MhlI GDGCHC 1 cut(s) 886
MluCI AATT 5 cut(s) 492, 589, 687, 738, 949
MlyI GAGTC 2 cut(s) 14, 253
MnlI CCTC 9 cut(s) 69, 120, 172, 328, 470, 535, 644, 670, 954
MroI TCCGGA 1 cut(s) 430
MseI TTAA 7 cut(s) 68, 141, 168, 467, 557, 719, 932
MslI CAYNNNNRTG 2 cut(s) 513, 861
MspCI CTTAAG 1 cut(s) 466
MspI CCGG 2 cut(s) 431, 704
MspR9I CCNGG 2 cut(s) 605, 725
MunI CAATTG 1 cut(s) 687
Mva1269I GAATGC 2 cut(s) 415, 618
MvaI CCWGG 2 cut(s) 605, 725
MwoI GCNNNNNNNGC 2 cut(s) 494, 624
NcoI CCATGG 1 cut(s) 292
NdeII GATC 5 cut(s) 130, 200, 211, 255, 706
NlaIII CATG 5 cut(s) 45, 137, 296, 487, 529
NmuCI GTSAC 1 cut(s) 863
NspI RCATGY 1 cut(s) 529
OliI CACNNNNGTG 1 cut(s) 513
PagI TCATGA 1 cut(s) 133
PasI CCCWGGG 1 cut(s) 724
PciI ACATGT 1 cut(s) 525
PctI GAATGC 2 cut(s) 415, 618
PfeI GAWTC 3 cut(s) 234, 283, 423
PkrI GCNGC 2 cut(s) 702, 776
PleI GAGTC 2 cut(s) 13, 252
PpsI GAGTC 2 cut(s) 13, 252
PscI ACATGT 1 cut(s) 525
PshBI ATTAAT 1 cut(s) 557
Psp6I CCWGG 2 cut(s) 603, 723
PspGI CCWGG 2 cut(s) 603, 723
PsuI RGATCY 1 cut(s) 706
RsaI GTAC 5 cut(s) 47, 150, 331, 586, 877
RsaNI GTAC 5 cut(s) 46, 149, 330, 585, 876
RseI CAYNNNNRTG 2 cut(s) 513, 861
SaqAI TTAA 7 cut(s) 68, 141, 168, 467, 557, 719, 932
SatI GCNGC 2 cut(s) 701, 775
Sau3AI GATC 5 cut(s) 130, 200, 211, 255, 706
SchI GAGTC 2 cut(s) 14, 253
ScrFI CCNGG 2 cut(s) 605, 725
SduI GDGCHC 1 cut(s) 886
SfaNI GCATC 2 cut(s) 349, 646
SmiMI CAYNNNNRTG 2 cut(s) 513, 861
SmlI CTYRAG 2 cut(s) 466, 635
SmoI CTYRAG 2 cut(s) 466, 635
Sse9I AATT 5 cut(s) 492, 589, 687, 738, 949
SsiI CCGC 1 cut(s) 368
SspI AATATT 1 cut(s) 840
StyD4I CCNGG 2 cut(s) 603, 723
StyI CCWWGG 1 cut(s) 292
TaaI ACNGT 1 cut(s) 572
TaqI TCGA 5 cut(s) 237, 254, 421, 540, 909
TasI AATT 5 cut(s) 492, 589, 687, 738, 949
TatI WGTACW 4 cut(s) 148, 329, 584, 875
TfiI GAWTC 3 cut(s) 234, 283, 423
Tru1I TTAA 7 cut(s) 68, 141, 168, 467, 557, 719, 932
Tru9I TTAA 7 cut(s) 68, 141, 168, 467, 557, 719, 932
TscAI CASTG 2 cut(s) 629, 868
TseFI GTSAC 1 cut(s) 863
TseI GCWGC 2 cut(s) 700, 774
Tsp45I GTSAC 1 cut(s) 863
TspDTI ATGAA 2 cut(s) 785, 846
TspRI CASTG 2 cut(s) 629, 868
Vha464I CTTAAG 1 cut(s) 466
VspI ATTAAT 1 cut(s) 557
XagI CCTNNNNNAGG 1 cut(s) 608
XapI RAATTY 2 cut(s) 589, 738
XceI RCATGY 1 cut(s) 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.