Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8233111.1

Orthogroup ID

OG0000886

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 759

Gene Structure 759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8233111.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 707 bp

tgaatcgtagccatggaaaggctatttatgtcaagctacctacattttgtactgaggaagcgttgagatatgtctcggatgcttgtccgcaacttaggggttttcgttttcctgatgatttagcgatgttcaagcattctcgaatcattccggaagttattgggaaatggaagtcgttgaagcacttaagtttgggaggaagcatggcaggaattgctatacaataccacagaagtggggaatacatgtgtaaagatttcgaggcgttgttgtcattaatcaactatgacagtccaaacagcagtacaaatttgtatgatatcctggtgcaggttggcattcactgcaagaacctcaagagtttgcatatttttgatgcccttgttggtgaagttgaggcattgacaattgcgacgacgctgccggatcttatgcacttaaccctgggacaatctcaaattcagcgagatagtcttgttattctcttgaagggctgcaaaaagctgattagctttcatcttgggtattgcgatggttttgaagagtgtgatgaagaaatattgaagcttgtttcccatatcagtgactttaggtgtacaggtgctccaagtagattttatactcgcttcgatgtgttgaagaagattgttttaacaatgggtataaggaattatgtttggaggaaaaggaagataatatcgggatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

234

Amino Acids

26.55

Weight (kDa)

8.85

Isoelectric Point (pI)

50.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000886)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g05260 FvH4_3g05270 FvH4_3g09690 FvH4_3g38380 FvH4_3g39340 FvH4_3g39340 FvH4_6g09400 FvH4_6g09680 FvH4_6g09690
rosa_chinensis	RchiOBHm_Chr3g0460331 RchiOBHm_Chr3g0476661 RchiOBHm_Chr5g0014451 RchiOBHm_Chr6g0308401 RchiOBHm_Chr7g0215881
rosa_laevigata	RLG00000001978 RLG00000010644 RLG00000012354 RLG00000012356 RLG00000012358 RLG00000016486 RLG00000025021 RLG00000025022 RLG00000025023 RLG00000032111
rosa_multiflora	Rmu_co8233111.1_g000001 Rmu_co8485739.1_g000001 Rmu_sc0000449.1_g000008 Rmu_sc0000449.1_g000009 Rmu_sc0000449.1_g000010 Rmu_sc0001356.1_g000007 Rmu_sc0003583.1_g000005 Rmu_sc0008241.1_g000015 Rmu_sc0010030.1_g000005
rosa_roxburghii	Rroxscaffold_1G00062120 Rroxscaffold_6G00405110 Rroxscaffold_6G00419610 Rroxscaffold_6G00419620 Rroxscaffold_6G00419630
rosa_rugosa	Rorug03G0156300 Rorug06G0366500
rosa_samantha	Rh2BG091300 Rh2CG093900 Rh3AG099500 Rh3AG099600 Rh3BG103500 Rh3BG103600 Rh3BG239000 Rh3CG105100 Rh3CG105200 Rh3CG105300 Rh3CG233000 Rh3CG233100 Rh3DG104900 Rh3DG105000 Rh3DG232900 Rh5AG113300 Rh5BG110000 Rh5CG121800 Rh5DG109100 Rh6AG476000 Rh6BG290200 Rh6BG290500 Rh6BG316800 Rh6BG486300 Rh6CG491500
rosa_wichuraiana	Rw5G009830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	321
AccIII	TCCGGA	1 cut(s)	150
AciI	CCGC	1 cut(s)	88
AclWI	GGATC	1 cut(s)	434
AcsI	RAATTY	2 cut(s)	309, 458
AfaI	GTAC	3 cut(s)	51, 306, 597
AfiI	CCNNNNNNNGG	2 cut(s)	18, 330
AflII	CTTAAG	1 cut(s)	186
AflIII	ACRYGT	1 cut(s)	245
AgsI	TTSAA	6 cut(s)	132, 180, 489, 541, 564, 639
AjnI	CCWGG	2 cut(s)	323, 443
AleI	CACNNNNGTG	1 cut(s)	233
AluBI	AGCT	4 cut(s)	36, 504, 512, 567
AluI	AGCT	4 cut(s)	36, 504, 512, 567
Alw21I	GWGCWC	1 cut(s)	606
Alw26I	GTCTC	1 cut(s)	78
AlwI	GGATC	1 cut(s)	434
Aor13HI	TCCGGA	1 cut(s)	150
ApeKI	GCWGC	2 cut(s)	420, 494
ApoI	RAATTY	2 cut(s)	309, 458
AseI	ATTAAT	1 cut(s)	277
AsuHPI	GGTGA	1 cut(s)	400
Bbv12I	GWGCWC	1 cut(s)	606
BbvI	GCAGC	2 cut(s)	407, 481
BccI	CCATC	1 cut(s)	526
BcgI	CGANNNNNNTGC	2 cut(s)	402, 436
BciT130I	CCWGG	2 cut(s)	325, 445
BcoDI	GTCTC	1 cut(s)	78
BfrI	CTTAAG	1 cut(s)	186
BfuAI	ACCTGC	1 cut(s)	321
BisI	GCNGC	2 cut(s)	421, 495
BlsI	GCNGC	2 cut(s)	422, 496
Bme1390I	CCNGG	2 cut(s)	325, 445
BmrFI	CCNGG	2 cut(s)	325, 445
BmsI	GCATC	2 cut(s)	69, 366
BpuEI	CTTGAG	1 cut(s)	340
BsaJI	CCNNGG	3 cut(s)	12, 443, 444
BsaWI	WCCGGW	1 cut(s)	150
BsaXI	ACNNNNNCTCC	2 cut(s)	588, 618
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 330
BseAI	TCCGGA	1 cut(s)	150
BseBI	CCWGG	2 cut(s)	325, 445
BseDI	CCNNGG	3 cut(s)	12, 443, 444
BseGI	GGATG	1 cut(s)	84
BseLI	CCNNNNNNNGG	2 cut(s)	18, 330
BseMII	CTCAG	1 cut(s)	44
BseXI	GCAGC	2 cut(s)	407, 481
BsgI	GTGCAG	1 cut(s)	349
BsiHKAI	GWGCWC	1 cut(s)	606
BsiSI	CCGG	2 cut(s)	151, 424
BslFI	GGGAC	1 cut(s)	461
BslI	CCNNNNNNNGG	2 cut(s)	18, 330
BsmAI	GTCTC	1 cut(s)	78
BsmFI	GGGAC	1 cut(s)	461
BsmI	GAATGC	2 cut(s)	135, 338
Bsp1286I	GDGCHC	1 cut(s)	606
Bsp13I	TCCGGA	1 cut(s)	150
Bsp1407I	TGTACA	1 cut(s)	595
Bsp143I	GATC	1 cut(s)	426
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	1 cut(s)	88
BspCNI	CTCAG	1 cut(s)	45
BspEI	TCCGGA	1 cut(s)	150
BspMI	ACCTGC	1 cut(s)	321
BspPI	GGATC	1 cut(s)	434
BspTI	CTTAAG	1 cut(s)	186
BsrGI	TGTACA	1 cut(s)	595
BssECI	CCNNGG	3 cut(s)	12, 443, 444
BssMI	GATC	1 cut(s)	426
BssT1I	CCWWGG	1 cut(s)	12
Bst2UI	CCWGG	2 cut(s)	325, 445
Bst4CI	ACNGT	1 cut(s)	292
Bst6I	CTCTTC	1 cut(s)	536
BstAFI	CTTAAG	1 cut(s)	186
BstAPI	GCANNNNNTGC	2 cut(s)	214, 344
BstAUI	TGTACA	1 cut(s)	595
BstDEI	CTNAG	2 cut(s)	53, 94
BstDSI	CCRYGG	1 cut(s)	12
BstENI	CCTNNNNNAGG	1 cut(s)	328
BstF5I	GGATG	1 cut(s)	84
BstKTI	GATC	1 cut(s)	429
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	1 cut(s)	426
BstMWI	GCNNNNNNNGC	2 cut(s)	214, 344
BstNI	CCWGG	2 cut(s)	325, 445
BstNSI	RCATGY	1 cut(s)	249
BstSCI	CCNGG	2 cut(s)	323, 443
BstV1I	GCAGC	2 cut(s)	407, 481
BstX2I	RGATCY	1 cut(s)	426
BstXI	CCANNNNNNTGG	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	426
BtgI	CCRYGG	1 cut(s)	12
BtgZI	GCGATG	2 cut(s)	139, 545
BtsCI	GGATG	1 cut(s)	84
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	2 cut(s)	342, 588
BveI	ACCTGC	1 cut(s)	321
CseI	GACGC	1 cut(s)	426
Csp6I	GTAC	3 cut(s)	50, 305, 596
CviAII	CATG	3 cut(s)	13, 204, 246
CviJI	RGCY	7 cut(s)	11, 22, 36, 494, 504, 512, 567
CviKI_1	RGCY	7 cut(s)	11, 22, 36, 494, 504, 512, 567
CviQI	GTAC	3 cut(s)	50, 305, 596
DdeI	CTNAG	2 cut(s)	53, 94
DpnI	GATC	1 cut(s)	428
DpnII	GATC	1 cut(s)	426
Eam1104I	CTCTTC	1 cut(s)	536
EarI	CTCTTC	1 cut(s)	536
Eco130I	CCWWGG	1 cut(s)	12
Eco32I	GATATC	1 cut(s)	321
EcoNI	CCTNNNNNAGG	1 cut(s)	328
EcoRII	CCWGG	2 cut(s)	323, 443
EcoRV	GATATC	1 cut(s)	321
EcoT14I	CCWWGG	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	3 cut(s)	16, 207, 249
FaqI	GGGAC	1 cut(s)	461
FatI	CATG	3 cut(s)	12, 203, 245
Fnu4HI	GCNGC	2 cut(s)	421, 495
FokI	GGATG	1 cut(s)	91
Fsp4HI	GCNGC	2 cut(s)	421, 495
GluI	GCNGC	2 cut(s)	421, 495
HapII	CCGG	2 cut(s)	151, 424
HgaI	GACGC	1 cut(s)	426
Hin1II	CATG	3 cut(s)	16, 207, 249
HindIII	AAGCTT	1 cut(s)	565
HinfI	GANTC	2 cut(s)	3, 143
HpaII	CCGG	2 cut(s)	151, 424
HphI	GGTGA	1 cut(s)	400
Hpy166II	GTNNAC	1 cut(s)	596
Hpy188I	TCNGA	1 cut(s)	78
Hpy188III	TCNNGA	6 cut(s)	112, 140, 151, 357, 486, 701
Hpy8I	GTNNAC	1 cut(s)	596
Hpy99I	CGWCG	2 cut(s)	417, 420
HpyAV	CCTTC	1 cut(s)	483
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4V	TGCA	5 cut(s)	330, 347, 366, 435, 497
HpyF10VI	GCNNNNNNNGC	2 cut(s)	214, 344
HpyF3I	CTNAG	2 cut(s)	53, 94
Hsp92II	CATG	3 cut(s)	16, 207, 249
Kpn2I	TCCGGA	1 cut(s)	150
Kzo9I	GATC	1 cut(s)	426
LmnI	GCTCC	1 cut(s)	609
Lsp1109I	GCAGC	2 cut(s)	407, 481
LweI	GCATC	2 cut(s)	69, 366
MaeIII	GTNAC	1 cut(s)	583
MalI	GATC	1 cut(s)	428
MboI	GATC	1 cut(s)	426
MboII	GAAGA	5 cut(s)	553, 565, 651, 654, 702
MfeI	CAATTG	1 cut(s)	407
MflI	RGATCY	1 cut(s)	426
MhlI	GDGCHC	1 cut(s)	606
MluCI	AATT	5 cut(s)	212, 309, 407, 458, 669
MnlI	CCTC	6 cut(s)	48, 190, 255, 364, 390, 674
MroI	TCCGGA	1 cut(s)	150
MseI	TTAA	4 cut(s)	187, 277, 439, 652
MslI	CAYNNNNRTG	2 cut(s)	233, 581
MspCI	CTTAAG	1 cut(s)	186
MspI	CCGG	2 cut(s)	151, 424
MspR9I	CCNGG	2 cut(s)	325, 445
MunI	CAATTG	1 cut(s)	407
Mva1269I	GAATGC	2 cut(s)	135, 338
MvaI	CCWGG	2 cut(s)	325, 445
MwoI	GCNNNNNNNGC	2 cut(s)	214, 344
NcoI	CCATGG	1 cut(s)	12
NdeII	GATC	1 cut(s)	426
NlaIII	CATG	3 cut(s)	16, 207, 249
NmuCI	GTSAC	1 cut(s)	583
NspI	RCATGY	1 cut(s)	249
OliI	CACNNNNGTG	1 cut(s)	233
PasI	CCCWGGG	1 cut(s)	444
PciI	ACATGT	1 cut(s)	245
PctI	GAATGC	2 cut(s)	135, 338
PfeI	GAWTC	2 cut(s)	3, 143
PkrI	GCNGC	2 cut(s)	422, 496
PscI	ACATGT	1 cut(s)	245
PshBI	ATTAAT	1 cut(s)	277
Psp6I	CCWGG	2 cut(s)	323, 443
PspGI	CCWGG	2 cut(s)	323, 443
PsuI	RGATCY	1 cut(s)	426
RsaI	GTAC	3 cut(s)	51, 306, 597
RsaNI	GTAC	3 cut(s)	50, 305, 596
RseI	CAYNNNNRTG	2 cut(s)	233, 581
SaqAI	TTAA	4 cut(s)	187, 277, 439, 652
SatI	GCNGC	2 cut(s)	421, 495
Sau3AI	GATC	1 cut(s)	426
ScrFI	CCNGG	2 cut(s)	325, 445
SduI	GDGCHC	1 cut(s)	606
SetI	ASST	9 cut(s)	38, 42, 335, 356, 506, 514, 569, 595, 603
SfaNI	GCATC	2 cut(s)	69, 366
SmiMI	CAYNNNNRTG	2 cut(s)	233, 581
SmlI	CTYRAG	2 cut(s)	186, 355
SmoI	CTYRAG	2 cut(s)	186, 355
Sse9I	AATT	5 cut(s)	212, 309, 407, 458, 669
SsiI	CCGC	1 cut(s)	88
SspI	AATATT	1 cut(s)	560
StyD4I	CCNGG	2 cut(s)	323, 443
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	1 cut(s)	292
TaqI	TCGA	3 cut(s)	141, 260, 629
TasI	AATT	5 cut(s)	212, 309, 407, 458, 669
TatI	WGTACW	3 cut(s)	49, 304, 595
TfiI	GAWTC	2 cut(s)	3, 143
Tru1I	TTAA	4 cut(s)	187, 277, 439, 652
Tru9I	TTAA	4 cut(s)	187, 277, 439, 652
TscAI	CASTG	2 cut(s)	349, 588
TseFI	GTSAC	1 cut(s)	583
TseI	GCWGC	2 cut(s)	420, 494
Tsp45I	GTSAC	1 cut(s)	583
TspDTI	ATGAA	2 cut(s)	505, 566
TspRI	CASTG	2 cut(s)	349, 588
Vha464I	CTTAAG	1 cut(s)	186
VspI	ATTAAT	1 cut(s)	277
XagI	CCTNNNNNAGG	1 cut(s)	328
XapI	RAATTY	2 cut(s)	309, 458
XceI	RCATGY	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.