Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000886

Physical Location & Seq

Genomic Coordinates Reverse (-)

17867635 .. 17872137

Gene Structure 4503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012358

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGAATGCTCGAAGGGACTACCGCAACAACAAAGTTGCTCTTTTTGATGGCATTGAGGAAGGTGGCATCAGGGCCTCATCTTCCTATTCCCATGAAATCGATGAGCAAGATAATGAAAGGGCAGTGGAAGGATTGCAAGATAGAGTCAATTTGCTGAAGAGATTGTCAGGTGACATACATGAGGAGGTGGAGAGTCATAATCACATGCTGGACCGAATGGGAAATGATATGGATTCATCAAGGGGAATGCTATCTGGTGCAATGGACAGGTTTAAGACGGTTTTTGAGACCAAGTCAAGCCAGAGAATGTTTACACTGGTGGCATCATTTCTGGTCGTCTTTCTAGTTATATACTATCTCACTAGTGAGGATGTTCAACTTAATAAAAAGTCCTTCGGTCCCTTTTACGACAAGTTTGTACATGAATATCGAATTGAAAAGAATCGTTTCTCCATCACTGCTTTTATAAAATTGGTAGTCAGTCGTAGCAATGGTAAGGCTTATGAGCTTAAACTACCTGGATTCTGTACAGAAGAAGCCTTGAGATTTGTTTCAGAAGCGTGCCCTGGTCTTAGAGTTTTGTCTTTGCGTGACGATTTGGAGCTTTTCATGGTTTCTCAATTCATCCCGCAACAAATCTCCATTCATTGCAAGCATTTTAAGGGTTTACATCTTTTCCATACCCCTGCTGGTAAAGCCCAAGCAAAGGCAGTTGTCGACTCGCTTCCTAATCTCAACTCCTTAAGCTTGATAGAATGTTGCATTGAACGAGATACTCTTGTTAACCTGTTGCAAGGCTGCAAAGAACTTGTGCATTTTGATGTCACATGTAAACGTGTTAGAGAGGATGATGAAGAAATATCAAAGCTTGCTTCCCACATTAAACAATTTATTCCGCCCCATGGTCGATGTGTTTTTATTGCATTTGAAGGGTTGAAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

No domains found.

Protein Analysis

315

Amino Acids

35.9

Weight (kDa)

6.47

Isoelectric Point (pI)

47.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000886)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g05260 FvH4_3g05270 FvH4_3g09690 FvH4_3g38380 FvH4_3g39340 FvH4_3g39340 FvH4_6g09400 FvH4_6g09680 FvH4_6g09690
rosa_chinensis	RchiOBHm_Chr3g0460331 RchiOBHm_Chr3g0476661 RchiOBHm_Chr5g0014451 RchiOBHm_Chr6g0308401 RchiOBHm_Chr7g0215881
rosa_laevigata	RLG00000001978 RLG00000010644 RLG00000012354 RLG00000012356 RLG00000012358 RLG00000016486 RLG00000025021 RLG00000025022 RLG00000025023 RLG00000032111
rosa_multiflora	Rmu_co8233111.1_g000001 Rmu_co8485739.1_g000001 Rmu_sc0000449.1_g000008 Rmu_sc0000449.1_g000009 Rmu_sc0000449.1_g000010 Rmu_sc0001356.1_g000007 Rmu_sc0003583.1_g000005 Rmu_sc0008241.1_g000015 Rmu_sc0010030.1_g000005
rosa_roxburghii	Rroxscaffold_1G00062120 Rroxscaffold_6G00405110 Rroxscaffold_6G00419610 Rroxscaffold_6G00419620 Rroxscaffold_6G00419630
rosa_rugosa	Rorug03G0156300 Rorug06G0366500
rosa_samantha	Rh2BG091300 Rh2CG093900 Rh3AG099500 Rh3AG099600 Rh3BG103500 Rh3BG103600 Rh3BG239000 Rh3CG105100 Rh3CG105200 Rh3CG105300 Rh3CG233000 Rh3CG233100 Rh3DG104900 Rh3DG105000 Rh3DG232900 Rh5AG113300 Rh5BG110000 Rh5CG121800 Rh5DG109100 Rh6AG476000 Rh6BG290200 Rh6BG290500 Rh6BG316800 Rh6BG486300 Rh6CG491500
rosa_wichuraiana	Rw5G009830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	467
AccI	GTMKAC	1 cut(s)	717
AciI	CCGC	3 cut(s)	22, 629, 896
AcuI	CTGAAG	1 cut(s)	176
AfaI	GTAC	2 cut(s)	420, 529
AfiI	CCNNNNNNNGG	2 cut(s)	706, 902
AflII	CTTAAG	1 cut(s)	742
AflIII	ACRYGT	2 cut(s)	827, 835
AgsI	TTSAA	5 cut(s)	377, 437, 767, 929, 937
AhlI	ACTAGT	1 cut(s)	362
AjnI	CCWGG	2 cut(s)	517, 565
AluBI	AGCT	4 cut(s)	508, 604, 747, 868
AluI	AGCT	4 cut(s)	508, 604, 747, 868
Alw26I	GTCTC	1 cut(s)	281
AoxI	GGCC	1 cut(s)	72
ApeKI	GCWGC	1 cut(s)	798
Asp700I	GAANNNNTTC	1 cut(s)	446
AspS9I	GGNCC	3 cut(s)	72, 211, 398
AsuHPI	GGTGA	1 cut(s)	182
AvaII	GGWCC	2 cut(s)	211, 398
BaeGI	GKGCMC	1 cut(s)	566
BaeI	ACNNNNGTAYC	2 cut(s)	765, 798
BbvI	GCAGC	1 cut(s)	785
BccI	CCATC	2 cut(s)	41, 461
BciT130I	CCWGG	2 cut(s)	519, 567
BcoDI	GTCTC	1 cut(s)	281
BcuI	ACTAGT	1 cut(s)	362
BfaI	CTAG	2 cut(s)	344, 363
BfrI	CTTAAG	1 cut(s)	742
BisI	GCNGC	1 cut(s)	799
BlsI	GCNGC	1 cut(s)	800
Bme1390I	CCNGG	2 cut(s)	519, 567
Bme18I	GGWCC	2 cut(s)	211, 398
BmgT120I	GGNCC	3 cut(s)	72, 211, 398
BmiI	GGNNCC	1 cut(s)	400
BmrFI	CCNGG	2 cut(s)	519, 567
BmsI	GCATC	2 cut(s)	75, 332
BpuEI	CTTGAG	1 cut(s)	562
Bsa29I	ATCGAT	1 cut(s)	99
BsaI	GGTCTC	1 cut(s)	281
BsaJI	CCNNGG	2 cut(s)	565, 901
Bsc4I	CCNNNNNNNGG	2 cut(s)	706, 902
Bse1I	ACTGG	1 cut(s)	321
Bse3DI	GCAATG	3 cut(s)	267, 496, 646
BseBI	CCWGG	2 cut(s)	519, 567
BseCI	ATCGAT	1 cut(s)	99
BseDI	CCNNGG	2 cut(s)	565, 901
BseGI	GGATG	3 cut(s)	376, 624, 853
BseLI	CCNNNNNNNGG	2 cut(s)	706, 902
BseMI	GCAATG	3 cut(s)	267, 496, 646
BseNI	ACTGG	1 cut(s)	321
BseRI	GAGGAG	1 cut(s)	197
BseSI	GKGCMC	1 cut(s)	566
BseXI	GCAGC	1 cut(s)	785
BshFI	GGCC	1 cut(s)	74
BshVI	ATCGAT	1 cut(s)	99
BslFI	GGGAC	2 cut(s)	29, 384
BslI	CCNNNNNNNGG	2 cut(s)	706, 902
BsmAI	GTCTC	1 cut(s)	281
BsmFI	GGGAC	2 cut(s)	29, 384
BsmI	GAATGC	2 cut(s)	10, 252
BsnI	GGCC	1 cut(s)	74
Bso31I	GGTCTC	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	566
Bsp1407I	TGTACA	2 cut(s)	418, 527
Bsp19I	CCATGG	1 cut(s)	901
BspACI	CCGC	3 cut(s)	22, 629, 896
BspANI	GGCC	1 cut(s)	74
BspDI	ATCGAT	1 cut(s)	99
BspLI	GGNNCC	1 cut(s)	400
BspTI	CTTAAG	1 cut(s)	742
BspTNI	GGTCTC	1 cut(s)	281
BsrDI	GCAATG	3 cut(s)	267, 496, 646
BsrGI	TGTACA	2 cut(s)	418, 527
BsrI	ACTGG	1 cut(s)	321
BssECI	CCNNGG	2 cut(s)	565, 901
BssT1I	CCWWGG	1 cut(s)	901
Bst2UI	CCWGG	2 cut(s)	519, 567
Bst4CI	ACNGT	1 cut(s)	280
Bst6I	CTCTTC	1 cut(s)	152
BstAFI	CTTAAG	1 cut(s)	742
BstAUI	TGTACA	2 cut(s)	418, 527
BstC8I	GCNNGC	3 cut(s)	562, 653, 870
BstDEI	CTNAG	1 cut(s)	572
BstDSI	CCRYGG	1 cut(s)	901
BstF5I	GGATG	3 cut(s)	376, 624, 853
BstMAI	GTCTC	1 cut(s)	281
BstMWI	GCNNNNNNNGC	1 cut(s)	695
BstNI	CCWGG	2 cut(s)	519, 567
BstNSI	RCATGY	2 cut(s)	208, 831
BstSCI	CCNGG	2 cut(s)	517, 565
BstSLI	GKGCMC	1 cut(s)	566
BstV1I	GCAGC	1 cut(s)	785
Bsu15I	ATCGAT	1 cut(s)	99
BsuRI	GGCC	1 cut(s)	74
BsuTUI	ATCGAT	1 cut(s)	99
BtgI	CCRYGG	1 cut(s)	901
BtsCI	GGATG	3 cut(s)	376, 624, 853
BtsI	GCAGTG	2 cut(s)	129, 456
BtsIMutI	CAGTG	3 cut(s)	129, 314, 456
Cac8I	GCNNGC	3 cut(s)	562, 653, 870
Cfr13I	GGNCC	3 cut(s)	72, 211, 398
ClaI	ATCGAT	1 cut(s)	99
Csp6I	GTAC	2 cut(s)	419, 528
CviAII	CATG	7 cut(s)	92, 179, 205, 422, 610, 828, 902
CviQI	GTAC	2 cut(s)	419, 528
DdeI	CTNAG	1 cut(s)	572
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
EciI	GGCGGA	1 cut(s)	885
Eco130I	CCWWGG	1 cut(s)	901
Eco31I	GGTCTC	1 cut(s)	281
Eco47I	GGWCC	2 cut(s)	211, 398
Eco57I	CTGAAG	1 cut(s)	176
EcoO109I	RGGNCCY	1 cut(s)	72
EcoRII	CCWGG	2 cut(s)	517, 565
EcoT14I	CCWWGG	1 cut(s)	901
ErhI	CCWWGG	1 cut(s)	901
FaeI	CATG	7 cut(s)	95, 182, 208, 425, 613, 831, 905
FalI	AAGNNNNNCTT	2 cut(s)	24, 56
FaqI	GGGAC	2 cut(s)	29, 384
FatI	CATG	7 cut(s)	91, 178, 204, 421, 609, 827, 901
FauI	CCCGC	1 cut(s)	636
FblI	GTMKAC	1 cut(s)	717
Fnu4HI	GCNGC	1 cut(s)	799
FokI	GGATG	3 cut(s)	383, 611, 860
Fsp4HI	GCNGC	1 cut(s)	799
FspBI	CTAG	2 cut(s)	344, 363
GluI	GCNGC	1 cut(s)	799
HaeIII	GGCC	1 cut(s)	74
Hin1II	CATG	7 cut(s)	95, 182, 208, 425, 613, 831, 905
HincII	GTYRAC	2 cut(s)	718, 784
HindII	GTYRAC	2 cut(s)	718, 784
HindIII	AAGCTT	2 cut(s)	745, 866
HinfI	GANTC	6 cut(s)	144, 193, 233, 442, 522, 719
HpaI	GTTAAC	1 cut(s)	784
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	5 cut(s)	312, 668, 718, 784, 833
Hpy188I	TCNGA	1 cut(s)	556
Hpy8I	GTNNAC	5 cut(s)	312, 668, 718, 784, 833
HpyAV	CCTTC	5 cut(s)	6, 53, 122, 403, 923
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	1 cut(s)	835
HpyCH4V	TGCA	8 cut(s)	136, 260, 651, 762, 793, 801, 814, 923
HpyF10VI	GCNNNNNNNGC	1 cut(s)	695
HpyF3I	CTNAG	1 cut(s)	572
HpySE526I	ACGT	1 cut(s)	835
Hsp92II	CATG	7 cut(s)	95, 182, 208, 425, 613, 831, 905
KspAI	GTTAAC	1 cut(s)	784
LmnI	GCTCC	1 cut(s)	601
Lsp1109I	GCAGC	1 cut(s)	785
LweI	GCATC	2 cut(s)	75, 332
MaeI	CTAG	2 cut(s)	344, 363
MaeII	ACGT	1 cut(s)	835
MaeIII	GTNAC	3 cut(s)	170, 590, 823
MboII	GAAGA	4 cut(s)	72, 169, 545, 866
MhlI	GDGCHC	1 cut(s)	566
MluCI	AATT	6 cut(s)	148, 432, 470, 620, 887, 940
MlyI	GAGTC	3 cut(s)	153, 202, 713
MnlI	CCTC	6 cut(s)	49, 85, 175, 178, 361, 838
MroXI	GAANNNNTTC	1 cut(s)	446
MseI	TTAA	7 cut(s)	273, 381, 510, 660, 743, 783, 882
MslI	CAYNNNNRTG	1 cut(s)	819
MspCI	CTTAAG	1 cut(s)	742
MspR9I	CCNGG	2 cut(s)	519, 567
Mva1269I	GAATGC	2 cut(s)	10, 252
MvaI	CCWGG	2 cut(s)	519, 567
MwoI	GCNNNNNNNGC	1 cut(s)	695
NcoI	CCATGG	1 cut(s)	901
NlaIII	CATG	7 cut(s)	95, 182, 208, 425, 613, 831, 905
NlaIV	GGNNCC	1 cut(s)	400
NmuCI	GTSAC	3 cut(s)	170, 590, 823
NspI	RCATGY	2 cut(s)	208, 831
PciI	ACATGT	1 cut(s)	827
PctI	GAATGC	2 cut(s)	10, 252
PdmI	GAANNNNTTC	1 cut(s)	446
PfeI	GAWTC	3 cut(s)	233, 442, 522
PflFI	GACNNNGTC	1 cut(s)	292
PkrI	GCNGC	1 cut(s)	800
PleI	GAGTC	3 cut(s)	152, 201, 713
PpsI	GAGTC	3 cut(s)	152, 201, 713
PscI	ACATGT	1 cut(s)	827
PsiI	TTATAA	1 cut(s)	467
Psp6I	CCWGG	2 cut(s)	517, 565
PspGI	CCWGG	2 cut(s)	517, 565
PspN4I	GGNNCC	1 cut(s)	400
PspPI	GGNCC	3 cut(s)	72, 211, 398
PsyI	GACNNNGTC	1 cut(s)	292
RsaI	GTAC	2 cut(s)	420, 529
RsaNI	GTAC	2 cut(s)	419, 528
RseI	CAYNNNNRTG	1 cut(s)	819
SalI	GTCGAC	1 cut(s)	716
SaqAI	TTAA	7 cut(s)	273, 381, 510, 660, 743, 783, 882
SatI	GCNGC	1 cut(s)	799
Sau96I	GGNCC	3 cut(s)	72, 211, 398
SchI	GAGTC	3 cut(s)	153, 202, 713
ScrFI	CCNGG	2 cut(s)	519, 567
SduI	GDGCHC	1 cut(s)	566
SfaNI	GCATC	2 cut(s)	75, 332
SinI	GGWCC	2 cut(s)	211, 398
SmiMI	CAYNNNNRTG	1 cut(s)	819
SmlI	CTYRAG	2 cut(s)	541, 742
SmoI	CTYRAG	2 cut(s)	541, 742
SpeI	ACTAGT	1 cut(s)	362
Sse9I	AATT	6 cut(s)	148, 432, 470, 620, 887, 940
SsiI	CCGC	3 cut(s)	22, 629, 896
SspMI	CTAG	2 cut(s)	344, 363
StyD4I	CCNGG	2 cut(s)	517, 565
StyI	CCWWGG	1 cut(s)	901
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	1 cut(s)	838
TaqI	TCGA	5 cut(s)	10, 99, 430, 717, 907
TaqII	GACCGA	2 cut(s)	228, 386
TasI	AATT	6 cut(s)	148, 432, 470, 620, 887, 940
TatI	WGTACW	2 cut(s)	418, 527
TfiI	GAWTC	3 cut(s)	233, 442, 522
Tru1I	TTAA	7 cut(s)	273, 381, 510, 660, 743, 783, 882
Tru9I	TTAA	7 cut(s)	273, 381, 510, 660, 743, 783, 882
TscAI	CASTG	3 cut(s)	129, 321, 463
TseFI	GTSAC	3 cut(s)	170, 590, 823
TseI	GCWGC	1 cut(s)	798
Tsp45I	GTSAC	3 cut(s)	170, 590, 823
TspDTI	ATGAA	9 cut(s)	17, 108, 129, 225, 438, 598, 613, 635, 867
TspRI	CASTG	3 cut(s)	129, 321, 463
Tth111I	GACNNNGTC	1 cut(s)	292
Vha464I	CTTAAG	1 cut(s)	742
VpaK11BI	GGWCC	2 cut(s)	211, 398
XceI	RCATGY	2 cut(s)	208, 831
XcmI	CCANNNNNNNNNTGG	1 cut(s)	686
XmiI	GTMKAC	1 cut(s)	717
XmnI	GAANNNNTTC	1 cut(s)	446
XspI	CTAG	2 cut(s)	344, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.