FvH4_6g09690

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000886
Physical Location & Seq
Reverse (-)
5769295 .. 5771316
2022 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g09690.t1

Sequence Viewer

Length: 1119 bp
ATGTCGAGACCAGAGAAGAAGATGAAGCGGTCGTTAGATCTGGCATCTCCACCGACGATCAACCGCGTCGTTTCGAACCAAGACAACCACCATCAACCTCTGAGTCGAAGATGGGAGGATTTAGAAGTGGACTGCTTAGCAAACGTGTTCGCCAGAGTCGGAATGGAGTCGCTGCTTCTAGCTCTCCCTTTTGTCTGCAAATCATGGTACGCCACGTCTCACAATCCCTTATGCTGGAAATCTCTCTCTTTCCCGGACTTTGAACCCAATCCTCTGTTCGTTTCTGTTCATGAAATCGATTTCGAGACCCGGAAATTCGGCCCCTTTTATGATAAGTTTATAAACGAGTACCGAATCAACAGAACTCGTTTCTCCATCACTGGTTTCATAAAATTGGTGATCAAACGTAGTGATGGGAAAGCCACTTCTCTAAAGTTACCTGGTTTTTGTAATGAAGAAGGTTTGAGATATGTTTCGGAAACGTGTCCTGAGCTTAGGATGTTGCATTTGTGCGATGATTTAGTGCTGTTCAAGCATTGCCGTGTTGTCTCCGAACTGATCGGAAAATGGAAGTATCTGGAGCACTTGACATTGGGTGGAAAATGCGGCGAAATTCTGAAGCAATACAGCGGAGAAGGAAGCGTGGAGTATTTGAGCAAGAGCTTTGAGGCGCTGCTGGCATTCGACAAGTTCAGCGATGGGAATCTGCACAAGATCCTTGTGCAGGTCGGCATTCACTGCAAGAATTTCAGGAGTTTGCATATCTTTGAGACTCTTGTTGGGGAAGCCGAAGCATTGGCAATTGTGACTATGCTGCCGGGGCTTATGGACTTGACATTGGGACAATCTCGCATCGAGCGGGATAATCTTGTCATGCTGTTGCAGGGATGCAAGAAGCTTTGCTGTTTTAATCTTTGGTATTGCGAAGGTTTTGAGGGGTGTGATCCAGAATTGTTGAAGCTTGCTTCACATATTAGCGAGTTTTGGTACAAGGGTGCTGTAACTGATTTTACCCGGTTGAATGTGTTGAAGAGGAATATCTTAACCATGGGTATAAAGAATCAAATCTGGAGGAAGGGTAGGATGCTAATGGCAAGGGTTTTGGACTTAGATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

373

Amino Acids

42.83

Weight (kDa)

8.31

Isoelectric Point (pI)

42.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 341
Acc36I ACCTGC 1 cut(s) 715
AccBSI CCGCTC 1 cut(s) 859
AccII CGCG 1 cut(s) 66
AciI CCGC 5 cut(s) 28, 64, 606, 630, 859
AclWI GGATC 2 cut(s) 709, 938
AcsI RAATTY 3 cut(s) 314, 612, 745
AcuI CTGAAG 1 cut(s) 638
AfaI GTAC 3 cut(s) 209, 350, 989
AfiI CCNNNNNNNGG 2 cut(s) 234, 724
AflIII ACRYGT 2 cut(s) 144, 482
AgsI TTSAA 5 cut(s) 263, 532, 958, 1021, 1030
AjiI CACGTC 1 cut(s) 216
AjnI CCWGG 1 cut(s) 439
AjuI GAANNNNNNNTTGG 2 cut(s) 260, 292
AluBI AGCT 5 cut(s) 182, 493, 663, 898, 961
AluI AGCT 5 cut(s) 182, 493, 663, 898, 961
Alw21I GWGCWC 1 cut(s) 585
Alw26I GTCTC 4 cut(s) 222, 299, 553, 764
AlwI GGATC 2 cut(s) 709, 938
AoxI GGCC 1 cut(s) 319
ApeKI GCWGC 3 cut(s) 172, 673, 814
ApoI RAATTY 3 cut(s) 314, 612, 745
AspLEI GCGC 1 cut(s) 673
AspS9I GGNCC 1 cut(s) 320
AsuC2I CCSGG 4 cut(s) 254, 310, 819, 1015
AsuHPI GGTGA 1 cut(s) 409
AsuII TTCGAA 1 cut(s) 74
BaeI ACNNNNGTAYC 2 cut(s) 979, 1012
Bbv12I GWGCWC 1 cut(s) 585
BbvI GCAGC 3 cut(s) 159, 660, 801
BccI CCATC 5 cut(s) 99, 105, 383, 407, 692
BceAI ACGGC 1 cut(s) 525
BciT130I CCWGG 1 cut(s) 441
BclI TGATCA 1 cut(s) 399
BcnI CCSGG 4 cut(s) 254, 310, 819, 1015
BcoDI GTCTC 4 cut(s) 222, 299, 553, 764
BfaI CTAG 1 cut(s) 179
BfoI RGCGCY 1 cut(s) 674
BfuAI ACCTGC 1 cut(s) 715
BglII AGATCT 1 cut(s) 37
BisI GCNGC 4 cut(s) 173, 607, 674, 815
BlpI GCTNAGC 1 cut(s) 136
BlsI GCNGC 4 cut(s) 174, 608, 675, 816
Bme1390I CCNGG 5 cut(s) 254, 310, 441, 819, 1015
BmgBI CACGTC 1 cut(s) 216
BmgT120I GGNCC 1 cut(s) 320
BmiI GGNNCC 1 cut(s) 322
BmrFI CCNGG 5 cut(s) 254, 310, 441, 819, 1015
BmsI GCATC 4 cut(s) 53, 861, 878, 1074
BpmI CTGGAG 2 cut(s) 599, 1090
Bpu10I CCTNAGC 2 cut(s) 489, 494
Bpu1102I GCTNAGC 1 cut(s) 136
Bpu14I TTCGAA 1 cut(s) 74
BpuMI CCSGG 4 cut(s) 254, 310, 819, 1015
Bsa29I ATCGAT 1 cut(s) 297
BsaBI GATNNNNATC 1 cut(s) 702
BsaI GGTCTC 1 cut(s) 299
BsaJI CCNNGG 2 cut(s) 818, 1047
BsaXI ACNNNNNCTCC 2 cut(s) 1063, 1093
Bsc4I CCNNNNNNNGG 2 cut(s) 234, 724
Bse1I ACTGG 1 cut(s) 385
Bse3DI GCAATG 1 cut(s) 535
Bse8I GATNNNNATC 1 cut(s) 702
BseBI CCWGG 1 cut(s) 441
BseCI ATCGAT 1 cut(s) 297
BseDI CCNNGG 2 cut(s) 818, 1047
BseGI GGATG 3 cut(s) 504, 893, 1089
BseJI GATNNNNATC 1 cut(s) 702
BseLI CCNNNNNNNGG 2 cut(s) 234, 724
BseMI GCAATG 1 cut(s) 535
BseMII CTCAG 2 cut(s) 92, 480
BseNI ACTGG 1 cut(s) 385
BseXI GCAGC 3 cut(s) 159, 660, 801
BsgI GTGCAG 2 cut(s) 692, 743
Bsh1236I CGCG 1 cut(s) 66
Bsh1285I CGRYCG 1 cut(s) 32
BshFI GGCC 1 cut(s) 321
BshVI ATCGAT 1 cut(s) 297
BsiEI CGRYCG 1 cut(s) 32
BsiHKAI GWGCWC 1 cut(s) 585
BsiSI CCGG 4 cut(s) 254, 310, 818, 1015
BslFI GGGAC 1 cut(s) 855
BslI CCNNNNNNNGG 2 cut(s) 234, 724
BsmAI GTCTC 4 cut(s) 222, 299, 553, 764
BsmBI CGTCTC 1 cut(s) 222
BsmFI GGGAC 1 cut(s) 855
BsmI GAATGC 2 cut(s) 680, 732
BsnI GGCC 1 cut(s) 321
Bso31I GGTCTC 1 cut(s) 299
Bsp119I TTCGAA 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 585
Bsp143I GATC 6 cut(s) 37, 57, 399, 558, 714, 943
Bsp1720I GCTNAGC 1 cut(s) 136
Bsp19I CCATGG 1 cut(s) 1047
BspACI CCGC 5 cut(s) 28, 64, 606, 630, 859
BspANI GGCC 1 cut(s) 321
BspCNI CTCAG 2 cut(s) 93, 481
BspDI ATCGAT 1 cut(s) 297
BspFNI CGCG 1 cut(s) 66
BspHI TCATGA 1 cut(s) 289
BspLI GGNNCC 1 cut(s) 322
BspMI ACCTGC 1 cut(s) 715
BspPI GGATC 2 cut(s) 709, 938
BspT104I TTCGAA 1 cut(s) 74
BspTNI GGTCTC 1 cut(s) 299
BsrBI CCGCTC 1 cut(s) 859
BsrDI GCAATG 1 cut(s) 535
BsrI ACTGG 1 cut(s) 385
BssECI CCNNGG 2 cut(s) 818, 1047
BssMI GATC 6 cut(s) 37, 57, 399, 558, 714, 943
BssT1I CCWWGG 1 cut(s) 1047
Bst2UI CCWGG 1 cut(s) 441
Bst6I CTCTTC 1 cut(s) 1025
BstAPI GCANNNNNTGC 1 cut(s) 738
BstBI TTCGAA 1 cut(s) 74
BstC8I GCNNGC 2 cut(s) 678, 963
BstDEI CTNAG 5 cut(s) 101, 136, 489, 494, 1108
BstDSI CCRYGG 1 cut(s) 1047
BstENI CCTNNNNNAGG 1 cut(s) 722
BstF5I GGATG 3 cut(s) 504, 893, 1089
BstFNI CGCG 1 cut(s) 66
BstH2I RGCGCY 1 cut(s) 674
BstHHI GCGC 1 cut(s) 673
BstKTI GATC 6 cut(s) 40, 60, 402, 561, 717, 946
BstMAI GTCTC 4 cut(s) 222, 299, 553, 764
BstMBI GATC 6 cut(s) 37, 57, 399, 558, 714, 943
BstMCI CGRYCG 1 cut(s) 32
BstMWI GCNNNNNNNGC 4 cut(s) 532, 677, 738, 820
BstNI CCWGG 1 cut(s) 441
BstSCI CCNGG 5 cut(s) 252, 308, 439, 817, 1013
BstUI CGCG 1 cut(s) 66
BstV1I GCAGC 3 cut(s) 159, 660, 801
BstX2I RGATCY 2 cut(s) 37, 714
BstYI RGATCY 2 cut(s) 37, 714
Bsu15I ATCGAT 1 cut(s) 297
BsuRI GGCC 1 cut(s) 321
BsuTUI ATCGAT 1 cut(s) 297
BtgI CCRYGG 1 cut(s) 1047
BtgZI GCGATG 2 cut(s) 528, 711
BtrI CACGTC 1 cut(s) 216
BtsCI GGATG 3 cut(s) 504, 893, 1089
BtsI GCAGTG 1 cut(s) 736
BtsIMutI CAGTG 2 cut(s) 378, 736
BveI ACCTGC 1 cut(s) 715
Cac8I GCNNGC 2 cut(s) 678, 963
CciI TCATGA 1 cut(s) 289
CfoI GCGC 1 cut(s) 673
Cfr13I GGNCC 1 cut(s) 320
ClaI ATCGAT 1 cut(s) 297
CseI GACGC 1 cut(s) 55
CsiI ACCWGGT 1 cut(s) 439
Csp6I GTAC 3 cut(s) 208, 349, 988
CviAII CATG 4 cut(s) 204, 290, 874, 1048
CviJI RGCY 9 cut(s) 182, 321, 422, 493, 663, 788, 823, 898, 961
CviKI_1 RGCY 9 cut(s) 182, 321, 422, 493, 663, 788, 823, 898, 961
CviQI GTAC 3 cut(s) 208, 349, 988
DdeI CTNAG 5 cut(s) 101, 136, 489, 494, 1108
DpnI GATC 6 cut(s) 39, 59, 401, 560, 716, 945
DpnII GATC 6 cut(s) 37, 57, 399, 558, 714, 943
Eam1104I CTCTTC 1 cut(s) 1025
EarI CTCTTC 1 cut(s) 1025
Eco130I CCWWGG 1 cut(s) 1047
Eco31I GGTCTC 1 cut(s) 299
Eco57I CTGAAG 1 cut(s) 638
EcoNI CCTNNNNNAGG 1 cut(s) 722
EcoRII CCWGG 1 cut(s) 439
EcoT14I CCWWGG 1 cut(s) 1047
ErhI CCWWGG 1 cut(s) 1047
Esp3I CGTCTC 1 cut(s) 222
FaeI CATG 4 cut(s) 207, 293, 877, 1051
FaqI GGGAC 1 cut(s) 855
FatI CATG 4 cut(s) 203, 289, 873, 1047
FauI CCCGC 1 cut(s) 852
FbaI TGATCA 1 cut(s) 399
Fnu4HI GCNGC 4 cut(s) 173, 607, 674, 815
FokI GGATG 3 cut(s) 511, 900, 1096
Fsp4HI GCNGC 4 cut(s) 173, 607, 674, 815
FspBI CTAG 1 cut(s) 179
GlaI GCGC 1 cut(s) 672
GluI GCNGC 4 cut(s) 173, 607, 674, 815
GsuI CTGGAG 2 cut(s) 599, 1090
HaeII RGCGCY 1 cut(s) 674
HaeIII GGCC 1 cut(s) 321
HapII CCGG 4 cut(s) 254, 310, 818, 1015
HgaI GACGC 1 cut(s) 55
HhaI GCGC 1 cut(s) 673
Hin1II CATG 4 cut(s) 207, 293, 877, 1051
Hin6I GCGC 1 cut(s) 671
HinP1I GCGC 1 cut(s) 671
HindIII AAGCTT 2 cut(s) 896, 959
HinfI GANTC 7 cut(s) 103, 156, 167, 354, 703, 772, 1060
HpaII CCGG 4 cut(s) 254, 310, 818, 1015
HphI GGTGA 1 cut(s) 409
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 6 cut(s) 102, 161, 478, 553, 563, 618
Hpy188III TCNNGA 8 cut(s) 6, 290, 304, 488, 578, 751, 947, 1069
Hpy8I GTNNAC 1 cut(s) 130
Hpy99I CGWCG 2 cut(s) 58, 71
HpyAV CCTTC 4 cut(s) 452, 629, 920, 1069
HpyCH4IV ACGT 4 cut(s) 144, 215, 406, 482
HpyCH4V TGCA 8 cut(s) 198, 505, 709, 724, 741, 760, 883, 891
HpyF10VI GCNNNNNNNGC 4 cut(s) 532, 677, 738, 820
HpyF3I CTNAG 5 cut(s) 101, 136, 489, 494, 1108
HpySE526I ACGT 4 cut(s) 144, 215, 406, 482
Hsp92II CATG 4 cut(s) 207, 293, 877, 1051
HspAI GCGC 1 cut(s) 671
Ksp22I TGATCA 1 cut(s) 399
Kzo9I GATC 6 cut(s) 37, 57, 399, 558, 714, 943
LmnI GCTCC 1 cut(s) 580
Lsp1109I GCAGC 3 cut(s) 159, 660, 801
LweI GCATC 4 cut(s) 53, 861, 878, 1074
MabI ACCWGGT 1 cut(s) 439
MaeI CTAG 1 cut(s) 179
MaeII ACGT 4 cut(s) 144, 215, 406, 482
MaeIII GTNAC 3 cut(s) 435, 805, 1000
MalI GATC 6 cut(s) 39, 59, 401, 560, 716, 945
MbiI CCGCTC 1 cut(s) 859
MboI GATC 6 cut(s) 37, 57, 399, 558, 714, 943
MboII GAAGA 5 cut(s) 28, 31, 120, 467, 1042
MfeI CAATTG 1 cut(s) 801
MflI RGATCY 2 cut(s) 37, 714
MhlI GDGCHC 1 cut(s) 585
MluCI AATT 6 cut(s) 314, 392, 612, 745, 801, 950
MlyI GAGTC 4 cut(s) 112, 165, 176, 766
MmeI TCCRAC 1 cut(s) 139
MnlI CCTC 7 cut(s) 108, 109, 282, 661, 928, 1026, 1065
MseI TTAA 2 cut(s) 909, 1043
MslI CAYNNNNRTG 1 cut(s) 540
MspA1I CMGCKG 1 cut(s) 630
MspI CCGG 4 cut(s) 254, 310, 818, 1015
MspR9I CCNGG 5 cut(s) 254, 310, 441, 819, 1015
MunI CAATTG 1 cut(s) 801
Mva1269I GAATGC 2 cut(s) 680, 732
MvaI CCWGG 1 cut(s) 441
MvnI CGCG 1 cut(s) 66
MwoI GCNNNNNNNGC 4 cut(s) 532, 677, 738, 820
NciI CCSGG 4 cut(s) 254, 310, 819, 1015
NcoI CCATGG 1 cut(s) 1047
NdeII GATC 6 cut(s) 37, 57, 399, 558, 714, 943
NlaIII CATG 4 cut(s) 207, 293, 877, 1051
NlaIV GGNNCC 1 cut(s) 322
NmuCI GTSAC 1 cut(s) 805
NspV TTCGAA 1 cut(s) 74
PagI TCATGA 1 cut(s) 289
PctI GAATGC 2 cut(s) 680, 732
PfeI GAWTC 3 cut(s) 354, 703, 1060
PfoI TCCNGGA 1 cut(s) 252
PkrI GCNGC 4 cut(s) 174, 608, 675, 816
PleI GAGTC 4 cut(s) 111, 164, 175, 766
PpsI GAGTC 4 cut(s) 111, 164, 175, 766
PsiI TTATAA 1 cut(s) 341
Psp6I CCWGG 1 cut(s) 439
PspGI CCWGG 1 cut(s) 439
PspN4I GGNNCC 1 cut(s) 322
PspPI GGNCC 1 cut(s) 320
PsuI RGATCY 2 cut(s) 37, 714
RsaI GTAC 3 cut(s) 209, 350, 989
RsaNI GTAC 3 cut(s) 208, 349, 988
RseI CAYNNNNRTG 1 cut(s) 540
SaqAI TTAA 2 cut(s) 909, 1043
SatI GCNGC 4 cut(s) 173, 607, 674, 815
Sau3AI GATC 6 cut(s) 37, 57, 399, 558, 714, 943
Sau96I GGNCC 1 cut(s) 320
SchI GAGTC 4 cut(s) 112, 165, 176, 766
ScrFI CCNGG 5 cut(s) 254, 310, 441, 819, 1015
SduI GDGCHC 1 cut(s) 585
SexAI ACCWGGT 1 cut(s) 439
SfaNI GCATC 4 cut(s) 53, 861, 878, 1074
SfuI TTCGAA 1 cut(s) 74
SmiMI CAYNNNNRTG 1 cut(s) 540
Sse9I AATT 6 cut(s) 314, 392, 612, 745, 801, 950
SsiI CCGC 5 cut(s) 28, 64, 606, 630, 859
SspMI CTAG 1 cut(s) 179
StyD4I CCNGG 5 cut(s) 252, 308, 439, 817, 1013
StyI CCWWGG 1 cut(s) 1047
TaiI ACGT 4 cut(s) 147, 218, 409, 485
TaqI TCGA 7 cut(s) 5, 74, 106, 297, 303, 684, 855
TasI AATT 6 cut(s) 314, 392, 612, 745, 801, 950
TauI GCSGC 1 cut(s) 609
TfiI GAWTC 3 cut(s) 354, 703, 1060
Tru1I TTAA 2 cut(s) 909, 1043
Tru9I TTAA 2 cut(s) 909, 1043
TscAI CASTG 2 cut(s) 385, 743
TseFI GTSAC 1 cut(s) 805
TseI GCWGC 3 cut(s) 172, 673, 814
Tsp45I GTSAC 1 cut(s) 805
TspDTI ATGAA 5 cut(s) 38, 278, 306, 376, 468
TspRI CASTG 2 cut(s) 385, 743
XagI CCTNNNNNAGG 1 cut(s) 722
XapI RAATTY 3 cut(s) 314, 612, 745
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XspI CTAG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.