Rh5DG109100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000886
Physical Location & Seq
Reverse (-)
9884413 .. 9886093
1681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG109100.1

Sequence Viewer

Length: 1017 bp
ATGCCGACGGACGGCGTCATTTCGGAGAAGGAGGACAAGCGAAGAAGAAGAAGAAGAAGATGGGAGGAGTTAGACATGGACTGCTTATCGAAGGTGTTTAACAGAGTTGGAATGGAGTCACTGATTTTGGCGGTGCCTTTTGTCTGCAAGTCGTGGTACAAAGCTAGCCTCAGTCCTTTATCCTGGCAAGAGCTCTCATTTCCAGAGTTAACGCGTTGTTCTTGGAGTTTCGATGATGATGAAGCTCGGAGTTTCGGTACATTTTATGATAAGTTTATGGATCATTTTGGAATCAATAGGAGTAGTTTCTCAGTCACTGGTTTTGTGAAGTCTGTAGTCGACCGGAGCAAAGGGGGTGCTACCCTGCTCTGGCTGCCTGCATTCTGTACAGAGGAAGCATTGAGATATGTTTCAGATGCGTGTCCTCTCCTCAAGTTTTTGGGTTTTGTGGATGACTTGGTGCTTTTTAAGCATTCGCAAGTTGTTCCGGAAGTGATTGGGAAATGGAAATATTTGGAGGTGTTGCATTTGGGGGGCAGCTCGGTGCCTATAATGCAGCAGATGTTGATGGAGCTGAGAAAAGGAAAACGCTTTAGTGAACGTTTCAAGGCCATGTTTGCGTCCGAAAGTCCTGACCGCTATAATGTTTTGGAGAGAATCGTTGTGCAAATTGGCGCTCACTGCAAAAGATTTACGACTTTGAGTCTTTATCAAGTCGATCTTGGTCAAGTTGAGGCATCGGCAATTGTGAACTGGCTGCCAAACCTTCGGAGCATATCGGCAACAGGGTGTACCATTGAAAGGGATACTGTTGTCACAATAATGCGGGGATGCAAAAATCTTGGGCTTTTTCGTGCCAATCATTGTGGCGGTTTTGAAGATAATGATGGAGAAATATCCAAGCTTGCTTCCAAGACTCGTCATTTTGCATGTGAGGGTTGTTCAGACCTTCCAGCCCGTGCTACTGCATGGAGGAAGTATGTTTTCATCAGGATTGGATGGGATATTGTGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

338

Amino Acids

38.57

Weight (kDa)

8.71

Isoelectric Point (pI)

53.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 133, 544
AccI GTMKAC 1 cut(s) 339
AccII CGCG 1 cut(s) 214
AccIII TCCGGA 1 cut(s) 487
AciI CCGC 4 cut(s) 131, 637, 826, 870
AclI AACGTT 1 cut(s) 601
AclWI GGATC 1 cut(s) 288
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 4 cut(s) 158, 259, 388, 793
AfiI CCNNNNNNNGG 3 cut(s) 11, 369, 801
AflIII ACRYGT 1 cut(s) 212
AgsI TTSAA 3 cut(s) 607, 800, 878
AhdI GACNNNNNGTC 1 cut(s) 702
AjnI CCWGG 1 cut(s) 182
AluBI AGCT 6 cut(s) 164, 193, 245, 540, 574, 904
AluI AGCT 6 cut(s) 164, 193, 245, 540, 574, 904
Alw21I GWGCWC 1 cut(s) 195
AlwI GGATC 1 cut(s) 288
AlwNI CAGNNNCTG 1 cut(s) 317
Aor13HI TCCGGA 1 cut(s) 487
AoxI GGCC 1 cut(s) 609
ApeKI GCWGC 4 cut(s) 373, 537, 556, 757
AspLEI GCGC 1 cut(s) 677
AsuNHI GCTAGC 1 cut(s) 164
BaeI ACNNNNGTAYC 2 cut(s) 798, 831
BanI GGYRCC 2 cut(s) 133, 544
BanII GRGCYC 1 cut(s) 195
Bbv12I GWGCWC 1 cut(s) 195
BbvI GCAGC 4 cut(s) 360, 549, 568, 744
BccI CCATC 4 cut(s) 54, 562, 881, 993
BceAI ACGGC 1 cut(s) 28
BciT130I CCWGG 1 cut(s) 184
BciVI GTATCC 1 cut(s) 799
BfaI CTAG 1 cut(s) 165
BfmI CTRYAG 1 cut(s) 333
BfoI RGCGCY 1 cut(s) 678
BfuI GTATCC 1 cut(s) 799
BisI GCNGC 4 cut(s) 374, 538, 557, 758
BlsI GCNGC 4 cut(s) 375, 539, 558, 759
Bme1390I CCNGG 1 cut(s) 184
BmeRI GACNNNNNGTC 1 cut(s) 702
BmiI GGNNCC 2 cut(s) 135, 546
BmrFI CCNGG 1 cut(s) 184
BmsI GCATC 3 cut(s) 406, 746, 821
BmtI GCTAGC 1 cut(s) 168
BpuEI CTTGAG 1 cut(s) 416
BsaHI GRCGYC 1 cut(s) 15
BsaWI WCCGGW 2 cut(s) 342, 487
BsaXI ACNNNNNCTCC 2 cut(s) 241, 271
Bsc4I CCNNNNNNNGG 3 cut(s) 11, 369, 801
Bse1I ACTGG 2 cut(s) 322, 758
BseAI TCCGGA 1 cut(s) 487
BseBI CCWGG 1 cut(s) 184
BseGI GGATG 3 cut(s) 457, 836, 1004
BseLI CCNNNNNNNGG 3 cut(s) 11, 369, 801
BseMII CTCAG 3 cut(s) 184, 324, 566
BseNI ACTGG 2 cut(s) 322, 758
BseRI GAGGAG 2 cut(s) 80, 419
BseXI GCAGC 4 cut(s) 360, 549, 568, 744
Bsh1236I CGCG 1 cut(s) 214
Bsh1285I CGRYCG 1 cut(s) 343
BshFI GGCC 1 cut(s) 611
BshNI GGYRCC 2 cut(s) 133, 544
BsiEI CGRYCG 1 cut(s) 343
BsiHKAI GWGCWC 1 cut(s) 195
BsiSI CCGG 2 cut(s) 343, 488
BslI CCNNNNNNNGG 3 cut(s) 11, 369, 801
BsmI GAATGC 2 cut(s) 380, 472
BsnI GGCC 1 cut(s) 611
Bsp1286I GDGCHC 1 cut(s) 195
Bsp13I TCCGGA 1 cut(s) 487
Bsp1407I TGTACA 1 cut(s) 386
Bsp143I GATC 2 cut(s) 280, 718
BspACI CCGC 4 cut(s) 131, 637, 826, 870
BspANI GGCC 1 cut(s) 611
BspCNI CTCAG 3 cut(s) 183, 323, 567
BspEI TCCGGA 1 cut(s) 487
BspFNI CGCG 1 cut(s) 214
BspLI GGNNCC 2 cut(s) 135, 546
BspOI GCTAGC 1 cut(s) 168
BspPI GGATC 1 cut(s) 288
BspT107I GGYRCC 2 cut(s) 133, 544
BsrGI TGTACA 1 cut(s) 386
BsrI ACTGG 2 cut(s) 322, 758
BssMI GATC 2 cut(s) 280, 718
BssNI GRCGYC 1 cut(s) 15
Bst2UI CCWGG 1 cut(s) 184
Bst4CI ACNGT 1 cut(s) 811
BstACI GRCGYC 1 cut(s) 15
BstAUI TGTACA 1 cut(s) 386
BstC8I GCNNGC 3 cut(s) 166, 378, 906
BstDEI CTNAG 3 cut(s) 170, 310, 575
BstF5I GGATG 3 cut(s) 457, 836, 1004
BstFNI CGCG 1 cut(s) 214
BstH2I RGCGCY 1 cut(s) 678
BstHHI GCGC 1 cut(s) 677
BstKTI GATC 2 cut(s) 283, 721
BstMBI GATC 2 cut(s) 280, 718
BstMCI CGRYCG 1 cut(s) 343
BstMWI GCNNNNNNNGC 5 cut(s) 373, 469, 553, 617, 681
BstNI CCWGG 1 cut(s) 184
BstNSI RCATGY 1 cut(s) 933
BstSCI CCNGG 1 cut(s) 182
BstSFI CTRYAG 1 cut(s) 333
BstUI CGCG 1 cut(s) 214
BstV1I GCAGC 4 cut(s) 360, 549, 568, 744
BsuI GTATCC 1 cut(s) 799
BsuRI GGCC 1 cut(s) 611
BtsCI GGATG 3 cut(s) 457, 836, 1004
BtsI GCAGTG 1 cut(s) 679
BtsIMutI CAGTG 3 cut(s) 119, 315, 679
Cac8I GCNNGC 3 cut(s) 166, 378, 906
CaiI CAGNNNCTG 1 cut(s) 317
CfoI GCGC 1 cut(s) 677
CseI GACGC 2 cut(s) 4, 609
Csp6I GTAC 4 cut(s) 157, 258, 387, 792
CspCI CAANNNNNGTGG 2 cut(s) 847, 882
CviAII CATG 4 cut(s) 76, 613, 930, 969
CviQI GTAC 4 cut(s) 157, 258, 387, 792
DdeI CTNAG 3 cut(s) 170, 310, 575
DpnI GATC 2 cut(s) 282, 720
DpnII GATC 2 cut(s) 280, 718
DriI GACNNNNNGTC 1 cut(s) 702
Eam1105I GACNNNNNGTC 1 cut(s) 702
Ecl136II GAGCTC 1 cut(s) 193
Eco24I GRGCYC 1 cut(s) 195
Eco53kI GAGCTC 1 cut(s) 193
EcoICRI GAGCTC 1 cut(s) 193
EcoRII CCWGG 1 cut(s) 182
EcoT38I GRGCYC 1 cut(s) 195
FaeI CATG 4 cut(s) 79, 616, 933, 972
FalI AAGNNNNNCTT 2 cut(s) 705, 737
FatI CATG 4 cut(s) 75, 612, 929, 968
FauI CCCGC 1 cut(s) 819
FblI GTMKAC 1 cut(s) 339
Fnu4HI GCNGC 4 cut(s) 374, 538, 557, 758
FokI GGATG 3 cut(s) 464, 843, 1011
FriOI GRGCYC 1 cut(s) 195
Fsp4HI GCNGC 4 cut(s) 374, 538, 557, 758
FspBI CTAG 1 cut(s) 165
GlaI GCGC 1 cut(s) 676
GluI GCNGC 4 cut(s) 374, 538, 557, 758
HaeII RGCGCY 1 cut(s) 678
HaeIII GGCC 1 cut(s) 611
HapII CCGG 2 cut(s) 343, 488
HgaI GACGC 2 cut(s) 4, 609
HhaI GCGC 1 cut(s) 677
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 4 cut(s) 79, 616, 933, 972
Hin6I GCGC 1 cut(s) 675
HinP1I GCGC 1 cut(s) 675
HincII GTYRAC 2 cut(s) 210, 340
HindII GTYRAC 2 cut(s) 210, 340
HindIII AAGCTT 1 cut(s) 902
HinfI GANTC 5 cut(s) 116, 291, 657, 703, 916
HpaI GTTAAC 1 cut(s) 210
HpaII CCGG 2 cut(s) 343, 488
Hpy166II GTNNAC 5 cut(s) 210, 340, 599, 751, 792
Hpy188I TCNGA 6 cut(s) 25, 249, 415, 625, 771, 946
Hpy188III TCNNGA 4 cut(s) 203, 488, 632, 991
Hpy8I GTNNAC 5 cut(s) 210, 340, 599, 751, 792
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 4 cut(s) 22, 85, 776, 959
HpyCH4III ACNGT 1 cut(s) 811
HpyCH4IV ACGT 1 cut(s) 601
HpyCH4V TGCA 9 cut(s) 147, 380, 526, 556, 667, 684, 834, 929, 968
HpyF10VI GCNNNNNNNGC 5 cut(s) 373, 469, 553, 617, 681
HpyF3I CTNAG 3 cut(s) 170, 310, 575
HpySE526I ACGT 1 cut(s) 601
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 4 cut(s) 79, 616, 933, 972
HspAI GCGC 1 cut(s) 675
Kpn2I TCCGGA 1 cut(s) 487
KspAI GTTAAC 1 cut(s) 210
Kzo9I GATC 2 cut(s) 280, 718
LmnI GCTCC 3 cut(s) 345, 571, 771
Lsp1109I GCAGC 4 cut(s) 360, 549, 568, 744
LweI GCATC 3 cut(s) 406, 746, 821
MaeI CTAG 1 cut(s) 165
MaeII ACGT 1 cut(s) 601
MaeIII GTNAC 3 cut(s) 117, 313, 814
MalI GATC 2 cut(s) 282, 720
MboI GATC 2 cut(s) 280, 718
MboII GAAGA 7 cut(s) 54, 57, 60, 63, 66, 69, 890
MfeI CAATTG 1 cut(s) 744
MhlI GDGCHC 1 cut(s) 195
MluCI AATT 2 cut(s) 669, 744
MluI ACGCGT 1 cut(s) 212
MlyI GAGTC 3 cut(s) 125, 712, 910
MmeI TCCRAC 1 cut(s) 88
MroI TCCGGA 1 cut(s) 487
MseI TTAA 3 cut(s) 99, 209, 468
MslI CAYNNNNRTG 1 cut(s) 821
MspI CCGG 2 cut(s) 343, 488
MspR9I CCNGG 1 cut(s) 184
MunI CAATTG 1 cut(s) 744
Mva1269I GAATGC 2 cut(s) 380, 472
MvaI CCWGG 1 cut(s) 184
MvnI CGCG 1 cut(s) 214
MwoI GCNNNNNNNGC 5 cut(s) 373, 469, 553, 617, 681
NdeII GATC 2 cut(s) 280, 718
NheI GCTAGC 1 cut(s) 164
NlaIII CATG 4 cut(s) 79, 616, 933, 972
NlaIV GGNNCC 2 cut(s) 135, 546
NmuCI GTSAC 3 cut(s) 117, 313, 814
NspI RCATGY 1 cut(s) 933
PctI GAATGC 2 cut(s) 380, 472
PfeI GAWTC 2 cut(s) 291, 657
PflFI GACNNNGTC 1 cut(s) 14
PkrI GCNGC 4 cut(s) 375, 539, 558, 759
PleI GAGTC 3 cut(s) 124, 711, 910
PpsI GAGTC 3 cut(s) 124, 711, 910
Psp124BI GAGCTC 1 cut(s) 195
Psp1406I AACGTT 1 cut(s) 601
Psp6I CCWGG 1 cut(s) 182
PspGI CCWGG 1 cut(s) 182
PspN4I GGNNCC 2 cut(s) 135, 546
PstNI CAGNNNCTG 1 cut(s) 317
PsyI GACNNNGTC 1 cut(s) 14
RsaI GTAC 4 cut(s) 158, 259, 388, 793
RsaNI GTAC 4 cut(s) 157, 258, 387, 792
RseI CAYNNNNRTG 1 cut(s) 821
SacI GAGCTC 1 cut(s) 195
SalI GTCGAC 1 cut(s) 338
SaqAI TTAA 3 cut(s) 99, 209, 468
SatI GCNGC 4 cut(s) 374, 538, 557, 758
Sau3AI GATC 2 cut(s) 280, 718
SchI GAGTC 3 cut(s) 125, 712, 910
ScrFI CCNGG 1 cut(s) 184
SduI GDGCHC 1 cut(s) 195
SfaNI GCATC 3 cut(s) 406, 746, 821
SfcI CTRYAG 1 cut(s) 333
SmiMI CAYNNNNRTG 1 cut(s) 821
SmlI CTYRAG 1 cut(s) 431
SmoI CTYRAG 1 cut(s) 431
Sse9I AATT 2 cut(s) 669, 744
SsiI CCGC 4 cut(s) 131, 637, 826, 870
SspI AATATT 1 cut(s) 512
SspMI CTAG 1 cut(s) 165
SstI GAGCTC 1 cut(s) 195
StyD4I CCNGG 1 cut(s) 182
TaaI ACNGT 1 cut(s) 811
TaiI ACGT 1 cut(s) 604
TaqI TCGA 4 cut(s) 89, 231, 339, 717
TasI AATT 2 cut(s) 669, 744
TatI WGTACW 1 cut(s) 386
TfiI GAWTC 2 cut(s) 291, 657
Tru1I TTAA 3 cut(s) 99, 209, 468
Tru9I TTAA 3 cut(s) 99, 209, 468
TscAI CASTG 3 cut(s) 126, 322, 686
TseFI GTSAC 3 cut(s) 117, 313, 814
TseI GCWGC 4 cut(s) 373, 537, 556, 757
Tsp45I GTSAC 3 cut(s) 117, 313, 814
TspDTI ATGAA 2 cut(s) 255, 976
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 3 cut(s) 126, 322, 686
Tth111I GACNNNGTC 1 cut(s) 14
XceI RCATGY 1 cut(s) 933
XmiI GTMKAC 1 cut(s) 339
XspI CTAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.