RLG00000001978

Leucine-rich repeats, typical (most populated) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000886
Physical Location & Seq
Forward (+)
23876948 .. 23878031
1084 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001978

Sequence Viewer

Length: 987 bp
ATGGAACATGAGGGAATCAGAATCAGAAGATGGGAGGATTTAGAGACGGACTGCTTGACTCGTGTGCTTTCCACAGTTGGAATTGAGTCTCTACTTCTGACAGTTCCTTTCGTTTGCAAATCATGGTACGTTACAAGTCTCAATCCCTTGTGCTTTCAGAGCCTCATATTTCCAGACTTTATGCCTTTTCCTCTGTTCATGTATTCTAATAATAGTGAGGAACCTCCTCAGAGTTTTGGTCCCTTTTATGATAAATTTATAGACGAGTATGGCATTGATAAGACTCGTTTCTCGATCACTGCATTTGTGAAGTTGGTAGTCAATCGTAGCAATGGATTAGCTACTCAACTTAAGCTACCAGAATTCTGTACCAAAGAAGGATTGATGTTTGTTTCGGACGCATGCCCTCTTCTTAAGAATGTATGGTTACCAGATGATTTGGTGATTTTCAAGACTTCTCACATAGTTTCACAGTTGATTAGCAAGTGGAAATTCTTGGAGAGCTTGACTTTGGGGTTTGGGATGTTGAACATCATGGACCAGTGTGAAATGGATGGTAGGCCTAAGTTTTTGAGTGAACATTTCGATAAGTTATTGACAATGAAAAGTTTCTTCTGCCCTAATGTTTTGGATGCAATTTTAGACCAGATTGGCACTCATTGCAAGCATTTTACGGATTTAATGGTTTATCATACTAGTCTTGGTGAAGTTGAGGCCTCAAGGATTGTGAAGTCACTGCCAAAACTTAAGAAGTTGGTCTTGAGTCATTGTCGCATTAATCGGGACAGTGTTGTTACTGTACTGAGGGGGTGCAAAGAGCTTGTACTTTTCACTGCCAATCAATGTGAAGGCTTTGAAGAGAGTGATGAAGAAATATCAAAATTTGGTTCTCAGATTATGAACTTTTCGTGCCAGGGTTGTGTAGGCGGGTTGGTTGGTTTTGGGATGAGAAAAGCAGCTCTTAATCATTTTGATCTATCATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 ubiquitin

Protein Analysis

329

Amino Acids

37.32

Weight (kDa)

5.8

Isoelectric Point (pI)

39.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 927
AcsI RAATTY 4 cut(s) 254, 362, 491, 881
AfaI GTAC 4 cut(s) 128, 370, 801, 825
AflII CTTAAG 3 cut(s) 350, 413, 746
AgsI TTSAA 3 cut(s) 451, 529, 857
AhlI ACTAGT 1 cut(s) 695
AjnI CCWGG 1 cut(s) 912
AluBI AGCT 5 cut(s) 341, 355, 504, 820, 959
AluI AGCT 5 cut(s) 341, 355, 504, 820, 959
Alw26I GTCTC 3 cut(s) 38, 93, 143
AoxI GGCC 2 cut(s) 560, 714
ApeKI GCWGC 1 cut(s) 956
ApoI RAATTY 4 cut(s) 254, 362, 491, 881
AseI ATTAAT 1 cut(s) 777
Asp700I GAANNNNTTC 1 cut(s) 608
AspS9I GGNCC 2 cut(s) 239, 538
AsuHPI GGTGA 2 cut(s) 454, 716
AvaII GGWCC 2 cut(s) 239, 538
BauI CACGAG 1 cut(s) 60
BbvI GCAGC 1 cut(s) 968
BccI CCATC 2 cut(s) 24, 548
BciT130I CCWGG 1 cut(s) 914
BcoDI GTCTC 3 cut(s) 38, 93, 143
BcuI ACTAGT 1 cut(s) 695
BfaI CTAG 1 cut(s) 696
BfrI CTTAAG 3 cut(s) 350, 413, 746
BisI GCNGC 1 cut(s) 957
BlsI GCNGC 1 cut(s) 958
Bme1390I CCNGG 1 cut(s) 914
Bme18I GGWCC 2 cut(s) 239, 538
BmgT120I GGNCC 2 cut(s) 239, 538
BmiI GGNNCC 2 cut(s) 222, 241
BmrFI CCNGG 1 cut(s) 914
BmsI GCATC 1 cut(s) 622
BpuEI CTTGAG 2 cut(s) 703, 781
BsaJI CCNNGG 1 cut(s) 913
Bse1I ACTGG 1 cut(s) 541
Bse3DI GCAATG 2 cut(s) 337, 658
BseBI CCWGG 1 cut(s) 914
BseDI CCNNGG 1 cut(s) 913
BseGI GGATG 4 cut(s) 528, 559, 637, 951
BseMI GCAATG 2 cut(s) 337, 658
BseMII CTCAG 3 cut(s) 242, 794, 905
BseNI ACTGG 1 cut(s) 541
BseRI GAGGAG 1 cut(s) 216
BseXI GCAGC 1 cut(s) 968
BshFI GGCC 2 cut(s) 562, 716
BslFI GGGAC 2 cut(s) 225, 797
BsmAI GTCTC 3 cut(s) 38, 93, 143
BsmBI CGTCTC 1 cut(s) 38
BsmFI GGGAC 2 cut(s) 225, 797
BsnI GGCC 2 cut(s) 562, 716
Bsp143I GATC 2 cut(s) 294, 973
BspACI CCGC 1 cut(s) 927
BspANI GGCC 2 cut(s) 562, 716
BspCNI CTCAG 3 cut(s) 241, 795, 904
BspHI TCATGA 1 cut(s) 983
BspLI GGNNCC 2 cut(s) 222, 241
BspTI CTTAAG 3 cut(s) 350, 413, 746
BsrDI GCAATG 2 cut(s) 337, 658
BsrI ACTGG 1 cut(s) 541
BssECI CCNNGG 1 cut(s) 913
BssMI GATC 2 cut(s) 294, 973
BssSI CACGAG 1 cut(s) 60
Bst2BI CACGAG 1 cut(s) 60
Bst2UI CCWGG 1 cut(s) 914
Bst4CI ACNGT 5 cut(s) 76, 103, 474, 788, 799
Bst6I CTCTTC 2 cut(s) 414, 852
BstAFI CTTAAG 3 cut(s) 350, 413, 746
BstAPI GCANNNNNTGC 1 cut(s) 660
BstC8I GCNNGC 2 cut(s) 403, 665
BstDEI CTNAG 4 cut(s) 228, 564, 803, 891
BstEII GGTNACC 1 cut(s) 426
BstF5I GGATG 4 cut(s) 528, 559, 637, 951
BstKTI GATC 2 cut(s) 297, 976
BstMAI GTCTC 3 cut(s) 38, 93, 143
BstMBI GATC 2 cut(s) 294, 973
BstMWI GCNNNNNNNGC 2 cut(s) 159, 660
BstNI CCWGG 1 cut(s) 914
BstNSI RCATGY 1 cut(s) 405
BstPI GGTNACC 1 cut(s) 426
BstSCI CCNGG 1 cut(s) 912
BstV1I GCAGC 1 cut(s) 968
BsuRI GGCC 2 cut(s) 562, 716
BtsCI GGATG 4 cut(s) 528, 559, 637, 951
BtsI GCAGTG 3 cut(s) 297, 734, 831
BtsIMutI CAGTG 5 cut(s) 297, 548, 734, 793, 831
Cac8I GCNNGC 2 cut(s) 403, 665
CciI TCATGA 1 cut(s) 983
Cfr13I GGNCC 2 cut(s) 239, 538
CseI GACGC 1 cut(s) 407
Csp6I GTAC 4 cut(s) 127, 369, 800, 824
CviAII CATG 6 cut(s) 8, 123, 199, 402, 535, 984
CviJI RGCY 9 cut(s) 162, 341, 355, 504, 562, 716, 820, 852, 959
CviKI_1 RGCY 9 cut(s) 162, 341, 355, 504, 562, 716, 820, 852, 959
CviQI GTAC 4 cut(s) 127, 369, 800, 824
DdeI CTNAG 4 cut(s) 228, 564, 803, 891
DpnI GATC 2 cut(s) 296, 975
DpnII GATC 2 cut(s) 294, 973
Eam1104I CTCTTC 2 cut(s) 414, 852
EarI CTCTTC 2 cut(s) 414, 852
Eco147I AGGCCT 2 cut(s) 562, 716
Eco47I GGWCC 2 cut(s) 239, 538
Eco91I GGTNACC 1 cut(s) 426
EcoO65I GGTNACC 1 cut(s) 426
EcoRI GAATTC 1 cut(s) 362
EcoRII CCWGG 1 cut(s) 912
Esp3I CGTCTC 1 cut(s) 38
FaeI CATG 6 cut(s) 11, 126, 202, 405, 538, 987
FalI AAGNNNNNCTT 4 cut(s) 743, 775, 945, 977
FaqI GGGAC 2 cut(s) 225, 797
FatI CATG 6 cut(s) 7, 122, 198, 401, 534, 983
FauI CCCGC 1 cut(s) 920
Fnu4HI GCNGC 1 cut(s) 957
FokI GGATG 4 cut(s) 535, 566, 644, 958
Fsp4HI GCNGC 1 cut(s) 957
FspBI CTAG 1 cut(s) 696
GluI GCNGC 1 cut(s) 957
HaeIII GGCC 2 cut(s) 562, 716
HgaI GACGC 1 cut(s) 407
Hin1II CATG 6 cut(s) 11, 126, 202, 405, 538, 987
HinfI GANTC 6 cut(s) 15, 21, 58, 86, 283, 763
HphI GGTGA 2 cut(s) 454, 716
Hpy166II GTNNAC 1 cut(s) 578
Hpy188I TCNGA 7 cut(s) 20, 26, 99, 159, 231, 397, 894
Hpy188III TCNNGA 6 cut(s) 173, 292, 451, 760, 782, 984
Hpy8I GTNNAC 1 cut(s) 578
HpyAV CCTTC 2 cut(s) 371, 842
HpyCH4III ACNGT 5 cut(s) 76, 103, 474, 788, 799
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 5 cut(s) 117, 302, 635, 663, 813
HpyF10VI GCNNNNNNNGC 2 cut(s) 159, 660
HpyF3I CTNAG 4 cut(s) 228, 564, 803, 891
HpySE526I ACGT 1 cut(s) 129
Hsp92II CATG 6 cut(s) 11, 126, 202, 405, 538, 987
Kzo9I GATC 2 cut(s) 294, 973
LpnPI CCDG 7 cut(s) 186, 372, 444, 554, 659, 899, 926
Lsp1109I GCAGC 1 cut(s) 968
LweI GCATC 1 cut(s) 622
MaeI CTAG 1 cut(s) 696
MaeII ACGT 1 cut(s) 129
MaeIII GTNAC 4 cut(s) 130, 426, 732, 793
MalI GATC 2 cut(s) 296, 975
MboI GATC 2 cut(s) 294, 973
MboII GAAGA 5 cut(s) 39, 401, 604, 869, 881
MluCI AATT 6 cut(s) 81, 254, 362, 491, 636, 881
MlyI GAGTC 4 cut(s) 52, 95, 277, 772
MmeI TCCRAC 1 cut(s) 58
MroXI GAANNNNTTC 1 cut(s) 608
MseI TTAA 6 cut(s) 351, 414, 680, 747, 777, 963
MspCI CTTAAG 3 cut(s) 350, 413, 746
MspR9I CCNGG 1 cut(s) 914
MvaI CCWGG 1 cut(s) 914
MwoI GCNNNNNNNGC 2 cut(s) 159, 660
NdeII GATC 2 cut(s) 294, 973
NlaIII CATG 6 cut(s) 11, 126, 202, 405, 538, 987
NlaIV GGNNCC 2 cut(s) 222, 241
NmuCI GTSAC 1 cut(s) 732
NspI RCATGY 1 cut(s) 405
PaeI GCATGC 1 cut(s) 405
PagI TCATGA 1 cut(s) 983
PceI AGGCCT 2 cut(s) 562, 716
PdmI GAANNNNTTC 1 cut(s) 608
PfeI GAWTC 2 cut(s) 15, 21
PkrI GCNGC 1 cut(s) 958
PleI GAGTC 4 cut(s) 52, 94, 277, 771
PpsI GAGTC 4 cut(s) 52, 94, 277, 771
PshBI ATTAAT 1 cut(s) 777
Psp6I CCWGG 1 cut(s) 912
PspEI GGTNACC 1 cut(s) 426
PspGI CCWGG 1 cut(s) 912
PspN4I GGNNCC 2 cut(s) 222, 241
PspPI GGNCC 2 cut(s) 239, 538
RsaI GTAC 4 cut(s) 128, 370, 801, 825
RsaNI GTAC 4 cut(s) 127, 369, 800, 824
SaqAI TTAA 6 cut(s) 351, 414, 680, 747, 777, 963
SatI GCNGC 1 cut(s) 957
Sau3AI GATC 2 cut(s) 294, 973
Sau96I GGNCC 2 cut(s) 239, 538
SchI GAGTC 4 cut(s) 52, 95, 277, 772
ScrFI CCNGG 1 cut(s) 914
SetI ASST 7 cut(s) 132, 226, 343, 357, 506, 822, 961
SfaNI GCATC 1 cut(s) 622
SinI GGWCC 2 cut(s) 239, 538
SmlI CTYRAG 5 cut(s) 350, 413, 718, 746, 760
SmoI CTYRAG 5 cut(s) 350, 413, 718, 746, 760
SpeI ACTAGT 1 cut(s) 695
SphI GCATGC 1 cut(s) 405
Sse9I AATT 6 cut(s) 81, 254, 362, 491, 636, 881
SseBI AGGCCT 2 cut(s) 562, 716
SsiI CCGC 1 cut(s) 927
SspMI CTAG 1 cut(s) 696
StuI AGGCCT 2 cut(s) 562, 716
StyD4I CCNGG 1 cut(s) 912
TaaI ACNGT 5 cut(s) 76, 103, 474, 788, 799
TaiI ACGT 1 cut(s) 132
TaqI TCGA 2 cut(s) 293, 585
TasI AATT 6 cut(s) 81, 254, 362, 491, 636, 881
TatI WGTACW 2 cut(s) 799, 823
TfiI GAWTC 2 cut(s) 15, 21
Tru1I TTAA 6 cut(s) 351, 414, 680, 747, 777, 963
Tru9I TTAA 6 cut(s) 351, 414, 680, 747, 777, 963
TscAI CASTG 5 cut(s) 304, 548, 741, 793, 838
TseFI GTSAC 1 cut(s) 732
TseI GCWGC 1 cut(s) 956
Tsp45I GTSAC 1 cut(s) 732
TspDTI ATGAA 4 cut(s) 187, 617, 882, 914
TspGWI ACGGA 2 cut(s) 62, 689
TspRI CASTG 5 cut(s) 304, 548, 741, 793, 838
Vha464I CTTAAG 3 cut(s) 350, 413, 746
VpaK11BI GGWCC 2 cut(s) 239, 538
VspI ATTAAT 1 cut(s) 777
XapI RAATTY 4 cut(s) 254, 362, 491, 881
XceI RCATGY 1 cut(s) 405
XmnI GAANNNNTTC 1 cut(s) 608
XspI CTAG 1 cut(s) 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.