Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000886

Physical Location & Seq

Genomic Coordinates Forward (+)

51523708 .. 51524214

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG290200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGGGGATGATGTCATTCAAAATAGTTGCAAGAAGGCCCGATTCATGGACAGCGAAGAAGAAGGCCGGATTGAGCGAAGAAGATGGGAGGAGTTACAGTCGGACTGCTTGACCAATATACTCTCCAGAGTTAGGATGGAATCTCTGCTTCTGGCCGTCCCTTTTGTCTGCAAATCATGGTACAAAACTACTCTCAATGCTTTATGCTGGCATAGTCTCAGATTCCCGGACGATGTACCTTGTCCTTTGTTCATTGGTAATGTGGATGATGATATGTTCATTGGTAATGTTGATGATAATGTTGGGCCTCGAAGTTTTGGTCCCTTTTATGATAAGTTTATAGATCAATGTGGAATTGATAAGAGTCGTTTCTCTATCACTGCTTTTGTAAAGTGTGTTGTAAACTGTTGCCGTGGAAAGGTTACCTTACTCGAATTACCTGAATTCTGTACTGAAGAAGCGGTGAGATATGTTTCACATAAGTGGCCCCTCCTTAAGGTTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 ubiquitin

Protein Analysis

168

Amino Acids

19.43

Weight (kDa)

5.46

Isoelectric Point (pI)

59.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000886)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g05260 FvH4_3g05270 FvH4_3g09690 FvH4_3g38380 FvH4_3g39340 FvH4_3g39340 FvH4_6g09400 FvH4_6g09680 FvH4_6g09690
rosa_chinensis	RchiOBHm_Chr3g0460331 RchiOBHm_Chr3g0476661 RchiOBHm_Chr5g0014451 RchiOBHm_Chr6g0308401 RchiOBHm_Chr7g0215881
rosa_laevigata	RLG00000001978 RLG00000010644 RLG00000012354 RLG00000012356 RLG00000012358 RLG00000016486 RLG00000025021 RLG00000025022 RLG00000025023 RLG00000032111
rosa_multiflora	Rmu_co8233111.1_g000001 Rmu_co8485739.1_g000001 Rmu_sc0000449.1_g000008 Rmu_sc0000449.1_g000009 Rmu_sc0000449.1_g000010 Rmu_sc0001356.1_g000007 Rmu_sc0003583.1_g000005 Rmu_sc0008241.1_g000015 Rmu_sc0010030.1_g000005
rosa_roxburghii	Rroxscaffold_1G00062120 Rroxscaffold_6G00405110 Rroxscaffold_6G00419610 Rroxscaffold_6G00419620 Rroxscaffold_6G00419630
rosa_rugosa	Rorug03G0156300 Rorug06G0366500
rosa_samantha	Rh2BG091300 Rh2CG093900 Rh3AG099500 Rh3AG099600 Rh3BG103500 Rh3BG103600 Rh3BG239000 Rh3CG105100 Rh3CG105200 Rh3CG105300 Rh3CG233000 Rh3CG233100 Rh3DG104900 Rh3DG105000 Rh3DG232900 Rh5AG113300 Rh5BG110000 Rh5CG121800 Rh5DG109100 Rh6AG476000 Rh6BG290200 Rh6BG290500 Rh6BG316800 Rh6BG486300 Rh6CG491500
rosa_wichuraiana	Rw5G009830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	461
AcoI	YGGCCR	1 cut(s)	153
AcsI	RAATTY	1 cut(s)	443
AcuI	CTGAAG	1 cut(s)	474
AfaI	GTAC	3 cut(s)	182, 237, 451
AfiI	CCNNNNNNNGG	4 cut(s)	46, 132, 418, 496
AflII	CTTAAG	1 cut(s)	494
AgsI	TTSAA	1 cut(s)	20
AleI	CACNNNNGTG	1 cut(s)	481
Alw26I	GTCTC	1 cut(s)	221
AoxI	GGCC	5 cut(s)	36, 64, 153, 305, 485
ApoI	RAATTY	1 cut(s)	443
ArsI	GACNNNNNNTTYG	2 cut(s)	304, 336
AspS9I	GGNCC	4 cut(s)	37, 305, 320, 486
AsuC2I	CCSGG	1 cut(s)	227
AsuHPI	GGTGA	1 cut(s)	475
AvaII	GGWCC	1 cut(s)	320
BccI	CCATC	2 cut(s)	78, 130
BceAI	ACGGC	2 cut(s)	140, 396
BcnI	CCSGG	1 cut(s)	227
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	1 cut(s)	505
BfrI	CTTAAG	1 cut(s)	494
Bme1390I	CCNGG	1 cut(s)	227
Bme18I	GGWCC	1 cut(s)	320
BmgT120I	GGNCC	4 cut(s)	37, 305, 320, 486
BmiI	GGNNCC	2 cut(s)	322, 488
BmrFI	CCNGG	1 cut(s)	227
BpmI	CTGGAG	1 cut(s)	109
BpuMI	CCSGG	1 cut(s)	227
BsaJI	CCNNGG	1 cut(s)	412
BsaXI	ACNNNNNCTCC	2 cut(s)	83, 113
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 132, 418, 496
BseDI	CCNNGG	1 cut(s)	412
BseGI	GGATG	3 cut(s)	13, 141, 271
BseLI	CCNNNNNNNGG	4 cut(s)	46, 132, 418, 496
BseMII	CTCAG	1 cut(s)	232
BseRI	GAGGAG	1 cut(s)	104
BshFI	GGCC	5 cut(s)	38, 66, 155, 307, 487
BsiSI	CCGG	2 cut(s)	67, 227
BslFI	GGGAC	2 cut(s)	143, 306
BslI	CCNNNNNNNGG	4 cut(s)	46, 132, 418, 496
BsmAI	GTCTC	1 cut(s)	221
BsmFI	GGGAC	2 cut(s)	143, 306
BsnI	GGCC	5 cut(s)	38, 66, 155, 307, 487
Bsp143I	GATC	1 cut(s)	343
BspACI	CCGC	1 cut(s)	461
BspANI	GGCC	5 cut(s)	38, 66, 155, 307, 487
BspCNI	CTCAG	1 cut(s)	231
BspLI	GGNNCC	2 cut(s)	322, 488
BspTI	CTTAAG	1 cut(s)	494
BssECI	CCNNGG	1 cut(s)	412
BssMI	GATC	1 cut(s)	343
Bst4CI	ACNGT	2 cut(s)	99, 407
BstAFI	CTTAAG	1 cut(s)	494
BstC8I	GCNNGC	1 cut(s)	209
BstDEI	CTNAG	1 cut(s)	218
BstDSI	CCRYGG	1 cut(s)	412
BstEII	GGTNACC	1 cut(s)	421
BstENI	CCTNNNNNAGG	1 cut(s)	494
BstF5I	GGATG	3 cut(s)	13, 141, 271
BstKTI	GATC	1 cut(s)	346
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	1 cut(s)	343
BstPI	GGTNACC	1 cut(s)	421
BstSCI	CCNGG	1 cut(s)	225
BsuRI	GGCC	5 cut(s)	38, 66, 155, 307, 487
BtgI	CCRYGG	1 cut(s)	412
BtsCI	GGATG	3 cut(s)	13, 141, 271
BtsI	GCAGTG	1 cut(s)	378
BtsIMutI	CAGTG	1 cut(s)	378
Cac8I	GCNNGC	1 cut(s)	209
Cfr13I	GGNCC	4 cut(s)	37, 305, 320, 486
Csp6I	GTAC	3 cut(s)	181, 236, 450
CviAII	CATG	2 cut(s)	46, 177
CviJI	RGCY	5 cut(s)	38, 66, 155, 307, 487
CviKI_1	RGCY	5 cut(s)	38, 66, 155, 307, 487
CviQI	GTAC	3 cut(s)	181, 236, 450
DdeI	CTNAG	1 cut(s)	218
DpnI	GATC	1 cut(s)	345
DpnII	GATC	1 cut(s)	343
EaeI	YGGCCR	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	320
Eco57I	CTGAAG	1 cut(s)	474
Eco91I	GGTNACC	1 cut(s)	421
EcoNI	CCTNNNNNAGG	1 cut(s)	494
EcoO65I	GGTNACC	1 cut(s)	421
EcoRI	GAATTC	1 cut(s)	443
FaeI	CATG	2 cut(s)	49, 180
FalI	AAGNNNNNCTT	2 cut(s)	410, 442
FaqI	GGGAC	2 cut(s)	143, 306
FatI	CATG	2 cut(s)	45, 176
FokI	GGATG	3 cut(s)	20, 148, 278
FspBI	CTAG	1 cut(s)	505
GsuI	CTGGAG	1 cut(s)	109
HaeIII	GGCC	5 cut(s)	38, 66, 155, 307, 487
HapII	CCGG	2 cut(s)	67, 227
Hin1II	CATG	2 cut(s)	49, 180
HinfI	GANTC	4 cut(s)	42, 140, 222, 364
HpaII	CCGG	2 cut(s)	67, 227
HphI	GGTGA	1 cut(s)	475
Hpy166II	GTNNAC	1 cut(s)	403
Hpy188I	TCNGA	2 cut(s)	103, 221
Hpy188III	TCNNGA	1 cut(s)	126
Hpy8I	GTNNAC	1 cut(s)	403
HpyAV	CCTTC	2 cut(s)	28, 56
HpyCH4III	ACNGT	2 cut(s)	99, 407
HpyCH4V	TGCA	2 cut(s)	30, 171
HpyF3I	CTNAG	1 cut(s)	218
Hsp92II	CATG	2 cut(s)	49, 180
Kzo9I	GATC	1 cut(s)	343
LpnPI	CCDG	6 cut(s)	80, 137, 139, 193, 240, 453
MaeI	CTAG	1 cut(s)	505
MaeIII	GTNAC	2 cut(s)	93, 421
MalI	GATC	1 cut(s)	345
MboI	GATC	1 cut(s)	343
MboII	GAAGA	5 cut(s)	68, 71, 90, 93, 467
MluCI	AATT	3 cut(s)	354, 434, 443
MlyI	GAGTC	1 cut(s)	373
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	3 cut(s)	82, 318, 500
MseI	TTAA	1 cut(s)	495
MslI	CAYNNNNRTG	1 cut(s)	481
MspCI	CTTAAG	1 cut(s)	494
MspI	CCGG	2 cut(s)	67, 227
MspR9I	CCNGG	1 cut(s)	227
NciI	CCSGG	1 cut(s)	227
NdeII	GATC	1 cut(s)	343
NlaIII	CATG	2 cut(s)	49, 180
NlaIV	GGNNCC	2 cut(s)	322, 488
OliI	CACNNNNGTG	1 cut(s)	481
PfeI	GAWTC	3 cut(s)	42, 140, 222
PfoI	TCCNGGA	1 cut(s)	225
PleI	GAGTC	1 cut(s)	372
PpsI	GAGTC	1 cut(s)	372
PspEI	GGTNACC	1 cut(s)	421
PspN4I	GGNNCC	2 cut(s)	322, 488
PspPI	GGNCC	4 cut(s)	37, 305, 320, 486
RsaI	GTAC	3 cut(s)	182, 237, 451
RsaNI	GTAC	3 cut(s)	181, 236, 450
RseI	CAYNNNNRTG	1 cut(s)	481
SaqAI	TTAA	1 cut(s)	495
Sau3AI	GATC	1 cut(s)	343
Sau96I	GGNCC	4 cut(s)	37, 305, 320, 486
SchI	GAGTC	1 cut(s)	373
ScrFI	CCNGG	1 cut(s)	227
SetI	ASST	5 cut(s)	241, 423, 428, 442, 501
SinI	GGWCC	1 cut(s)	320
SmiMI	CAYNNNNRTG	1 cut(s)	481
SmlI	CTYRAG	1 cut(s)	494
SmoI	CTYRAG	1 cut(s)	494
Sse9I	AATT	3 cut(s)	354, 434, 443
SsiI	CCGC	1 cut(s)	461
SspMI	CTAG	1 cut(s)	505
StyD4I	CCNGG	1 cut(s)	225
TaaI	ACNGT	2 cut(s)	99, 407
TaqI	TCGA	2 cut(s)	310, 432
TasI	AATT	3 cut(s)	354, 434, 443
TatI	WGTACW	1 cut(s)	449
TfiI	GAWTC	3 cut(s)	42, 140, 222
Tru1I	TTAA	1 cut(s)	495
Tru9I	TTAA	1 cut(s)	495
TscAI	CASTG	1 cut(s)	385
TspDTI	ATGAA	3 cut(s)	34, 241, 268
TspRI	CASTG	1 cut(s)	385
Vha464I	CTTAAG	1 cut(s)	494
VpaK11BI	GGWCC	1 cut(s)	320
XagI	CCTNNNNNAGG	1 cut(s)	494
XapI	RAATTY	1 cut(s)	443
XcmI	CCANNNNNNNNNTGG	1 cut(s)	133
XspI	CTAG	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.