Rh6BG316800

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000886
Physical Location & Seq
Forward (+)
54714000 .. 54715185
1186 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG316800.1

Sequence Viewer

Length: 1023 bp
ATGGATGAAGGAAGAAGAAGATGGGATGAGTTAGGTTTGGACTGTTTAACAAAGGTGTTCACAAGCGTTGGAATGGAATCGCTAACCTTGGCTGTCCCTTTTGTATGCAAAACATGGTATGCAGCATCCCTCAATCCTTTATGCTGGCAATCTCTCTCTTTTCCGGACTTTGTACCTTTGCCTTTGTTCATCAGTGATGATGTTCAACTTAATAAAAAGTCCTTCGGTCCCTTTTACGACAAGTTTGTACATGAATATCGAATTGAAATGAATCGTTTCTCCATCACTGCTTTTATAAAGTTGGTAGTCAATCGTAGCGATGGTAAGGCTTTTGAGCTTAAGCTACCTGGATTCTGTACAGAAGAAGCGTTGAGATTTGTTTCAGAAGCGTGCCCTGGTCTTAGAGTTTTGTCTTTGCGTGACGATTTGGAGCTTTTCAAGGTTTCTCAATTTATCCCGCAAGTGATCGGAAAGTGGAAATCTTTGGAGTGCTTATATTTGGGAGGCAACATGGACATAATAATTGAACTCGACTCGATAGGCGAAAATCACTTGAATACTGAAGCTTTTCAGGATTTTGTATTCTTTCCAATGCCCTATGGTCATACAATTTTGTGTGAAATCCTGCAGCAAATCTCCATTCATTGCAAGCATTTTAGGGGTTTACATCTTTTCCATACCCCTGTTGGTAAAGCCCAAGCAAAGGCAATTGTCGACTCGCTTCCTAATCTCAACTTCTTAAGCTTGATAGAATGTTGCATTGAACGAGATACTCTTGTTAACCTGTTGCAGGGCTGCAAAGAACTTGTGCATTTTGATGTCACATGTCAACGTGTTAGAGAGGATGATGAAGAAATATCAAAGCTTGCTTCCCACATTAAACAATTTATTCCACCCCGTGGTCGATGTGCTTTTATTGCATATGAAGGGATGAAGAATCATATTTTTTTTTACTGTCACAGAGAGCGTTATATGAACATTATTGTAAACGGTCATTTTCTTGAAATGACACTACTAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

340

Amino Acids

39.27

Weight (kDa)

5.86

Isoelectric Point (pI)

50.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 296
AccB7I CCANNNNNTGG 1 cut(s) 899
AccI GTMKAC 1 cut(s) 714
AccIII TCCGGA 1 cut(s) 163
AciI CCGC 1 cut(s) 458
AcuI CTGAAG 1 cut(s) 582
AdeI CACNNNGTG 1 cut(s) 899
AfaI GTAC 3 cut(s) 174, 249, 358
AfiI CCNNNNNNNGG 3 cut(s) 703, 790, 899
AflII CTTAAG 2 cut(s) 338, 739
AflIII ACRYGT 2 cut(s) 824, 832
AgsI TTSAA 7 cut(s) 206, 266, 439, 527, 556, 764, 1004
AjnI CCWGG 2 cut(s) 346, 394
AluBI AGCT 6 cut(s) 337, 343, 433, 566, 744, 865
AluI AGCT 6 cut(s) 337, 343, 433, 566, 744, 865
Aor13HI TCCGGA 1 cut(s) 163
ApeKI GCWGC 3 cut(s) 122, 628, 795
Asp700I GAANNNNTTC 2 cut(s) 275, 567
AspS9I GGNCC 1 cut(s) 227
AvaII GGWCC 1 cut(s) 227
BaeGI GKGCMC 1 cut(s) 395
BaeI ACNNNNGTAYC 2 cut(s) 762, 795
BbvI GCAGC 3 cut(s) 134, 640, 782
BccI CCATC 3 cut(s) 15, 290, 314
BciT130I CCWGG 2 cut(s) 348, 396
BfaI CTAG 1 cut(s) 1016
BfmI CTRYAG 1 cut(s) 626
BfrI CTTAAG 2 cut(s) 338, 739
BisI GCNGC 3 cut(s) 123, 629, 796
BlsI GCNGC 3 cut(s) 124, 630, 797
Bme1390I CCNGG 2 cut(s) 348, 396
Bme18I GGWCC 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 227
BmiI GGNNCC 1 cut(s) 229
BmrFI CCNGG 2 cut(s) 348, 396
BmsI GCATC 1 cut(s) 134
BsaJI CCNNGG 3 cut(s) 87, 394, 898
BsaWI WCCGGW 1 cut(s) 163
Bsc4I CCNNNNNNNGG 3 cut(s) 703, 790, 899
Bse3DI GCAATG 1 cut(s) 643
BseAI TCCGGA 1 cut(s) 163
BseBI CCWGG 2 cut(s) 348, 396
BseDI CCNNGG 3 cut(s) 87, 394, 898
BseGI GGATG 5 cut(s) 10, 31, 125, 850, 936
BseLI CCNNNNNNNGG 3 cut(s) 703, 790, 899
BseMI GCAATG 1 cut(s) 643
BseSI GKGCMC 1 cut(s) 395
BseXI GCAGC 3 cut(s) 134, 640, 782
BsiSI CCGG 1 cut(s) 164
BslFI GGGAC 2 cut(s) 80, 213
BslI CCNNNNNNNGG 3 cut(s) 703, 790, 899
BsmFI GGGAC 2 cut(s) 80, 213
Bsp1286I GDGCHC 1 cut(s) 395
Bsp13I TCCGGA 1 cut(s) 163
Bsp1407I TGTACA 2 cut(s) 247, 356
Bsp143I GATC 1 cut(s) 465
BspACI CCGC 1 cut(s) 458
BspEI TCCGGA 1 cut(s) 163
BspLI GGNNCC 1 cut(s) 229
BspMAI CTGCAG 1 cut(s) 630
BspTI CTTAAG 2 cut(s) 338, 739
BsrDI GCAATG 1 cut(s) 643
BsrGI TGTACA 2 cut(s) 247, 356
BssECI CCNNGG 3 cut(s) 87, 394, 898
BssMI GATC 1 cut(s) 465
BssT1I CCWWGG 1 cut(s) 87
Bst2UI CCWGG 2 cut(s) 348, 396
Bst4CI ACNGT 3 cut(s) 44, 956, 992
BstAFI CTTAAG 2 cut(s) 338, 739
BstAUI TGTACA 2 cut(s) 247, 356
BstC8I GCNNGC 4 cut(s) 146, 391, 650, 867
BstDEI CTNAG 1 cut(s) 401
BstDSI CCRYGG 1 cut(s) 898
BstENI CCTNNNNNAGG 1 cut(s) 788
BstF5I GGATG 5 cut(s) 10, 31, 125, 850, 936
BstKTI GATC 1 cut(s) 468
BstMBI GATC 1 cut(s) 465
BstMWI GCNNNNNNNGC 1 cut(s) 917
BstNI CCWGG 2 cut(s) 348, 396
BstNSI RCATGY 1 cut(s) 828
BstSCI CCNGG 2 cut(s) 346, 394
BstSFI CTRYAG 1 cut(s) 626
BstSLI GKGCMC 1 cut(s) 395
BstV1I GCAGC 3 cut(s) 134, 640, 782
BtgI CCRYGG 1 cut(s) 898
BtgZI GCGATG 1 cut(s) 333
BtsCI GGATG 5 cut(s) 10, 31, 125, 850, 936
BtsI GCAGTG 1 cut(s) 285
BtsIMutI CAGTG 2 cut(s) 199, 285
Cac8I GCNNGC 4 cut(s) 146, 391, 650, 867
Cfr13I GGNCC 1 cut(s) 227
Csp6I GTAC 3 cut(s) 173, 248, 357
CviAII CATG 4 cut(s) 114, 251, 511, 825
CviQI GTAC 3 cut(s) 173, 248, 357
DdeI CTNAG 1 cut(s) 401
DpnI GATC 1 cut(s) 467
DpnII GATC 1 cut(s) 465
DraIII CACNNNGTG 1 cut(s) 899
Eco130I CCWWGG 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 227
Eco57I CTGAAG 1 cut(s) 582
EcoNI CCTNNNNNAGG 1 cut(s) 788
EcoRII CCWGG 2 cut(s) 346, 394
EcoT14I CCWWGG 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 4 cut(s) 117, 254, 514, 828
FaqI GGGAC 2 cut(s) 80, 213
FatI CATG 4 cut(s) 113, 250, 510, 824
FauI CCCGC 1 cut(s) 465
FauNDI CATATG 1 cut(s) 922
FblI GTMKAC 1 cut(s) 714
Fnu4HI GCNGC 3 cut(s) 123, 629, 796
FokI GGATG 5 cut(s) 17, 38, 112, 857, 943
Fsp4HI GCNGC 3 cut(s) 123, 629, 796
FspBI CTAG 1 cut(s) 1016
GluI GCNGC 3 cut(s) 123, 629, 796
HapII CCGG 1 cut(s) 164
Hin1II CATG 4 cut(s) 117, 254, 514, 828
HincII GTYRAC 3 cut(s) 715, 781, 830
HindII GTYRAC 3 cut(s) 715, 781, 830
HindIII AAGCTT 3 cut(s) 564, 742, 863
HinfI GANTC 6 cut(s) 77, 271, 351, 533, 716, 937
HpaI GTTAAC 1 cut(s) 781
HpaII CCGG 1 cut(s) 164
Hpy166II GTNNAC 6 cut(s) 60, 665, 715, 781, 830, 988
Hpy188I TCNGA 2 cut(s) 385, 470
Hpy188III TCNNGA 3 cut(s) 164, 572, 1001
Hpy8I GTNNAC 6 cut(s) 60, 665, 715, 781, 830, 988
HpyAV CCTTC 2 cut(s) 232, 920
HpyCH4III ACNGT 3 cut(s) 44, 956, 992
HpyCH4IV ACGT 1 cut(s) 832
HpyCH4V TGCA 9 cut(s) 108, 122, 628, 648, 759, 790, 798, 811, 920
HpyF10VI GCNNNNNNNGC 1 cut(s) 917
HpyF3I CTNAG 1 cut(s) 401
HpySE526I ACGT 1 cut(s) 832
Hsp92II CATG 4 cut(s) 117, 254, 514, 828
Kpn2I TCCGGA 1 cut(s) 163
KspAI GTTAAC 1 cut(s) 781
Kzo9I GATC 1 cut(s) 465
LmnI GCTCC 1 cut(s) 430
Lsp1109I GCAGC 3 cut(s) 134, 640, 782
LweI GCATC 1 cut(s) 134
MaeI CTAG 1 cut(s) 1016
MaeII ACGT 1 cut(s) 832
MaeIII GTNAC 3 cut(s) 419, 820, 956
MalI GATC 1 cut(s) 467
MboI GATC 1 cut(s) 465
MboII GAAGA 6 cut(s) 24, 27, 30, 374, 863, 946
MfeI CAATTG 1 cut(s) 708
MhlI GDGCHC 1 cut(s) 395
MluCI AATT 6 cut(s) 261, 449, 522, 609, 708, 884
MlyI GAGTC 2 cut(s) 527, 710
MmeI TCCRAC 1 cut(s) 49
MnlI CCTC 3 cut(s) 140, 497, 835
MroI TCCGGA 1 cut(s) 163
MroXI GAANNNNTTC 2 cut(s) 275, 567
MseI TTAA 6 cut(s) 47, 210, 339, 740, 780, 879
MslI CAYNNNNRTG 1 cut(s) 816
MspCI CTTAAG 2 cut(s) 338, 739
MspI CCGG 1 cut(s) 164
MspR9I CCNGG 2 cut(s) 348, 396
MunI CAATTG 1 cut(s) 708
MvaI CCWGG 2 cut(s) 348, 396
MwoI GCNNNNNNNGC 1 cut(s) 917
NdeI CATATG 1 cut(s) 922
NdeII GATC 1 cut(s) 465
NlaIII CATG 4 cut(s) 117, 254, 514, 828
NlaIV GGNNCC 1 cut(s) 229
NmuCI GTSAC 3 cut(s) 419, 820, 956
NspI RCATGY 1 cut(s) 828
PciI ACATGT 1 cut(s) 824
PdmI GAANNNNTTC 2 cut(s) 275, 567
PfeI GAWTC 4 cut(s) 77, 271, 351, 937
PflMI CCANNNNNTGG 1 cut(s) 899
PkrI GCNGC 3 cut(s) 124, 630, 797
PleI GAGTC 2 cut(s) 527, 710
PpsI GAGTC 2 cut(s) 527, 710
PscI ACATGT 1 cut(s) 824
PsiI TTATAA 1 cut(s) 296
Psp6I CCWGG 2 cut(s) 346, 394
PspGI CCWGG 2 cut(s) 346, 394
PspN4I GGNNCC 1 cut(s) 229
PspPI GGNCC 1 cut(s) 227
PstI CTGCAG 1 cut(s) 630
RsaI GTAC 3 cut(s) 174, 249, 358
RsaNI GTAC 3 cut(s) 173, 248, 357
RseI CAYNNNNRTG 1 cut(s) 816
SalI GTCGAC 1 cut(s) 713
SaqAI TTAA 6 cut(s) 47, 210, 339, 740, 780, 879
SatI GCNGC 3 cut(s) 123, 629, 796
Sau3AI GATC 1 cut(s) 465
Sau96I GGNCC 1 cut(s) 227
SchI GAGTC 2 cut(s) 527, 710
ScrFI CCNGG 2 cut(s) 348, 396
SduI GDGCHC 1 cut(s) 395
SfaNI GCATC 1 cut(s) 134
SfcI CTRYAG 1 cut(s) 626
SinI GGWCC 1 cut(s) 227
SmiMI CAYNNNNRTG 1 cut(s) 816
SmlI CTYRAG 2 cut(s) 338, 739
SmoI CTYRAG 2 cut(s) 338, 739
Sse9I AATT 6 cut(s) 261, 449, 522, 609, 708, 884
SsiI CCGC 1 cut(s) 458
SspMI CTAG 1 cut(s) 1016
StyD4I CCNGG 2 cut(s) 346, 394
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 3 cut(s) 44, 956, 992
TaiI ACGT 1 cut(s) 835
TaqI TCGA 5 cut(s) 259, 531, 536, 714, 904
TaqII GACCGA 1 cut(s) 215
TasI AATT 6 cut(s) 261, 449, 522, 609, 708, 884
TatI WGTACW 2 cut(s) 247, 356
TfiI GAWTC 4 cut(s) 77, 271, 351, 937
Tru1I TTAA 6 cut(s) 47, 210, 339, 740, 780, 879
Tru9I TTAA 6 cut(s) 47, 210, 339, 740, 780, 879
TscAI CASTG 2 cut(s) 199, 292
TseFI GTSAC 3 cut(s) 419, 820, 956
TseI GCWGC 3 cut(s) 122, 628, 795
Tsp45I GTSAC 3 cut(s) 419, 820, 956
TspDTI ATGAA 9 cut(s) 21, 178, 267, 284, 632, 864, 939, 947, 989
TspRI CASTG 2 cut(s) 199, 292
Van91I CCANNNNNTGG 1 cut(s) 899
Vha464I CTTAAG 2 cut(s) 338, 739
VpaK11BI GGWCC 1 cut(s) 227
XagI CCTNNNNNAGG 1 cut(s) 788
XceI RCATGY 1 cut(s) 828
XcmI CCANNNNNNNNNTGG 1 cut(s) 683
XmiI GTMKAC 1 cut(s) 714
XmnI GAANNNNTTC 2 cut(s) 275, 567
XspI CTAG 1 cut(s) 1016
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.