Rh3BG103500

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000886
Physical Location & Seq
Reverse (-)
8288240 .. 8289328
1089 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG103500.1

Sequence Viewer

Length: 1089 bp
ATGTTGAGACCTGAGAAGAAGATGAAGCCGTCGTCGCCACCATGGATCGACGGCGTCGTTTCGAGTCATCGCCACGATCAATCTCTCACTCGAAGATGGGAGGATTTAGAATTGGACTGTTTAGCAAATGTGTTTGCCAAAGTCGGAATGGAGTCGCTGCTTCTAGCTCTCCCTTTTGTCTGCAAATCATGGTACGCCGCATCTCTCAATCCCTTATGCTGGAAGTTTCTCTCTTTCCCAGATTTTGAGCCCTATCCTTTGTTCACTGGTATGCATGAAATCGATTTTGAAACCCGGAAATTTGGCCCCTTTTATGATAAGTTCATAAGGAAGTACCGAATTCGTAGGACTCGTTTCTCCATCACCGGTTTCATAAAATTGGTTGTCAGTCGTAGCAATGGGAAGGCTACTTATCTCAAGCTACCTGGATTTTGTACCGAAGAGGCCTTGAGATATGTGTCGGAGGCGTGTCCTGAACTTAGGATGTTGTATTTGTGCGATGATTTAGTGATTTTCAAGCATACCCAAATCATTTCTGAACTAATTGGGAAGTGGAAGTATTTGGAGCACTTGACTTTGGGAGGAAACTGTGCGGAAATTTTGAAGCAATACCGCGGAATCGGGGATTACTTGAGTAAGAACTTTGAGGCGTTAACGTCGTTCAAATACAATAGCAATGAAACTTTGCACAGAATCCTGGTACAGATCGCCGTTCACTGCAAGCATTTTAGGAGTCTGCATATCTTTGAAACCCTTGTCGGTGAAGTTGAAGCATTGGCAATTGTGACTATGCTACCGGATCTCACGCACTTAACCCTGGCACAATCTTGTATTGAACGAGATACTCTTTTCACGCTCCTGCGGGGCTGCAAGAAGCTTTGCTCATTTAATCTCTGGTATTGCGAAGGTTTTGAAGAGTGTGATGAAGAATTATTGAAGCTTGCTTCCCATATTAGCGACTTCTGGTATAAAGGTGGTCCAAATGATTTTACCGGCTTGCATGAGTTGAAGATGATTATTTTAACCATGTGTTTAAAGAATCAACTTTGGAGGAAAGGGAAGATTTTACTGGCAGAGTATTATCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

362

Amino Acids

42.22

Weight (kDa)

8.29

Isoelectric Point (pI)

46.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 615
AciI CCGC 5 cut(s) 198, 593, 613, 615, 862
AclWI GGATC 2 cut(s) 53, 807
AcsI RAATTY 3 cut(s) 299, 339, 597
AcyI GRCGYC 1 cut(s) 54
AfaI GTAC 4 cut(s) 194, 335, 436, 702
AfiI CCNNNNNNNGG 1 cut(s) 219
AgeI ACCGGT 1 cut(s) 365
AjnI CCWGG 3 cut(s) 424, 696, 816
AluBI AGCT 4 cut(s) 167, 421, 877, 940
AluI AGCT 4 cut(s) 167, 421, 877, 940
Alw21I GWGCWC 1 cut(s) 570
AlwI GGATC 2 cut(s) 53, 807
AoxI GGCC 2 cut(s) 304, 444
ApeKI GCWGC 2 cut(s) 157, 867
ApoI RAATTY 3 cut(s) 299, 339, 597
AsiGI ACCGGT 1 cut(s) 365
AspS9I GGNCC 2 cut(s) 305, 977
AsuC2I CCSGG 1 cut(s) 295
AsuHPI GGTGA 2 cut(s) 355, 773
AvaII GGWCC 1 cut(s) 977
BanII GRGCYC 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 570
BbvI GCAGC 2 cut(s) 144, 854
BccI CCATC 2 cut(s) 90, 368
BceAI ACGGC 3 cut(s) 13, 67, 695
BciT130I CCWGG 3 cut(s) 426, 698, 818
BcnI CCSGG 1 cut(s) 295
BfaI CTAG 1 cut(s) 164
BisI GCNGC 3 cut(s) 158, 198, 868
BlsI GCNGC 3 cut(s) 159, 199, 869
Bme1390I CCNGG 4 cut(s) 295, 426, 698, 818
Bme18I GGWCC 1 cut(s) 977
BmgT120I GGNCC 2 cut(s) 305, 977
BmiI GGNNCC 1 cut(s) 307
BmrFI CCNGG 4 cut(s) 295, 426, 698, 818
BmsI GCATC 1 cut(s) 209
BpuEI CTTGAG 3 cut(s) 401, 469, 652
BpuMI CCSGG 1 cut(s) 295
Bsa29I ATCGAT 1 cut(s) 282
BsaHI GRCGYC 1 cut(s) 54
BsaJI CCNNGG 3 cut(s) 41, 613, 816
BsaWI WCCGGW 2 cut(s) 365, 796
Bsc4I CCNNNNNNNGG 1 cut(s) 219
Bse118I RCCGGY 2 cut(s) 365, 992
Bse1I ACTGG 2 cut(s) 271, 1074
Bse3DI GCAATG 2 cut(s) 403, 682
BseBI CCWGG 3 cut(s) 426, 698, 818
BseCI ATCGAT 1 cut(s) 282
BseDI CCNNGG 3 cut(s) 41, 613, 816
BseGI GGATG 1 cut(s) 489
BseLI CCNNNNNNNGG 1 cut(s) 219
BseMI GCAATG 2 cut(s) 403, 682
BseNI ACTGG 2 cut(s) 271, 1074
BseXI GCAGC 2 cut(s) 144, 854
Bsh1236I CGCG 1 cut(s) 615
BshFI GGCC 2 cut(s) 306, 446
BshTI ACCGGT 1 cut(s) 365
BshVI ATCGAT 1 cut(s) 282
BsiHKAI GWGCWC 1 cut(s) 570
BsiSI CCGG 4 cut(s) 295, 366, 797, 993
BslI CCNNNNNNNGG 1 cut(s) 219
BsnI GGCC 2 cut(s) 306, 446
Bsp1286I GDGCHC 2 cut(s) 252, 570
Bsp143I GATC 4 cut(s) 45, 76, 705, 799
Bsp19I CCATGG 1 cut(s) 41
BspACI CCGC 5 cut(s) 198, 593, 613, 615, 862
BspANI GGCC 2 cut(s) 306, 446
BspCNI CTCAG 1 cut(s) 4
BspDI ATCGAT 1 cut(s) 282
BspFNI CGCG 1 cut(s) 615
BspLI GGNNCC 1 cut(s) 307
BspPI GGATC 2 cut(s) 53, 807
BsrDI GCAATG 2 cut(s) 403, 682
BsrFI RCCGGY 2 cut(s) 365, 992
BsrI ACTGG 2 cut(s) 271, 1074
BssAI RCCGGY 2 cut(s) 365, 992
BssECI CCNNGG 3 cut(s) 41, 613, 816
BssMI GATC 4 cut(s) 45, 76, 705, 799
BssNI GRCGYC 1 cut(s) 54
BssT1I CCWWGG 1 cut(s) 41
Bst2UI CCWGG 3 cut(s) 426, 698, 818
Bst4CI ACNGT 2 cut(s) 119, 590
Bst6I CTCTTC 2 cut(s) 435, 909
BstACI GRCGYC 1 cut(s) 54
BstC8I GCNNGC 3 cut(s) 722, 942, 998
BstDEI CTNAG 2 cut(s) 12, 479
BstDSI CCRYGG 2 cut(s) 41, 613
BstF5I GGATG 1 cut(s) 489
BstFNI CGCG 1 cut(s) 615
BstKTI GATC 4 cut(s) 48, 79, 708, 802
BstMBI GATC 4 cut(s) 45, 76, 705, 799
BstMWI GCNNNNNNNGC 1 cut(s) 34
BstNI CCWGG 3 cut(s) 426, 698, 818
BstSCI CCNGG 4 cut(s) 293, 424, 696, 816
BstUI CGCG 1 cut(s) 615
BstV1I GCAGC 2 cut(s) 144, 854
BstX2I RGATCY 1 cut(s) 799
BstYI RGATCY 1 cut(s) 799
Bsu15I ATCGAT 1 cut(s) 282
BsuRI GGCC 2 cut(s) 306, 446
BsuTUI ATCGAT 1 cut(s) 282
BtgI CCRYGG 2 cut(s) 41, 613
BtgZI GCGATG 2 cut(s) 53, 513
BtsCI GGATG 1 cut(s) 489
BtsI GCAGTG 1 cut(s) 715
BtsIMutI CAGTG 2 cut(s) 264, 715
Cac8I GCNNGC 3 cut(s) 722, 942, 998
Cfr10I RCCGGY 2 cut(s) 365, 992
Cfr13I GGNCC 2 cut(s) 305, 977
Cfr42I CCGCGG 1 cut(s) 616
ClaI ATCGAT 1 cut(s) 282
CseI GACGC 1 cut(s) 43
Csp6I GTAC 4 cut(s) 193, 334, 435, 701
CspAI ACCGGT 1 cut(s) 365
CviAII CATG 5 cut(s) 42, 189, 275, 1001, 1027
CviQI GTAC 4 cut(s) 193, 334, 435, 701
DdeI CTNAG 2 cut(s) 12, 479
DpnI GATC 4 cut(s) 47, 78, 707, 801
DpnII GATC 4 cut(s) 45, 76, 705, 799
DraI TTTAAA 1 cut(s) 1035
Eam1104I CTCTTC 2 cut(s) 435, 909
EarI CTCTTC 2 cut(s) 435, 909
Eco130I CCWWGG 1 cut(s) 41
Eco147I AGGCCT 1 cut(s) 446
Eco24I GRGCYC 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 977
EcoRI GAATTC 1 cut(s) 339
EcoRII CCWGG 3 cut(s) 424, 696, 816
EcoT14I CCWWGG 1 cut(s) 41
EcoT22I ATGCAT 1 cut(s) 276
EcoT38I GRGCYC 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 41
FaeI CATG 5 cut(s) 45, 192, 278, 1004, 1030
FatI CATG 5 cut(s) 41, 188, 274, 1000, 1026
FauI CCCGC 1 cut(s) 855
Fnu4HI GCNGC 3 cut(s) 158, 198, 868
FokI GGATG 1 cut(s) 496
FriOI GRGCYC 1 cut(s) 252
Fsp4HI GCNGC 3 cut(s) 158, 198, 868
FspBI CTAG 1 cut(s) 164
GluI GCNGC 3 cut(s) 158, 198, 868
HaeIII GGCC 2 cut(s) 306, 446
HapII CCGG 4 cut(s) 295, 366, 797, 993
HgaI GACGC 1 cut(s) 43
Hin1I GRCGYC 1 cut(s) 54
Hin1II CATG 5 cut(s) 45, 192, 278, 1004, 1030
HincII GTYRAC 1 cut(s) 654
HindII GTYRAC 1 cut(s) 654
HindIII AAGCTT 2 cut(s) 875, 938
HinfI GANTC 7 cut(s) 64, 152, 349, 618, 693, 733, 1039
HpaI GTTAAC 1 cut(s) 654
HpaII CCGG 4 cut(s) 295, 366, 797, 993
HphI GGTGA 2 cut(s) 355, 773
Hpy166II GTNNAC 3 cut(s) 264, 654, 715
Hpy188I TCNGA 3 cut(s) 146, 463, 538
Hpy188III TCNNGA 1 cut(s) 473
Hpy8I GTNNAC 3 cut(s) 264, 654, 715
Hpy99I CGWCG 5 cut(s) 34, 37, 53, 59, 661
HpyAV CCTTC 2 cut(s) 397, 899
HpyCH4III ACNGT 2 cut(s) 119, 590
HpyCH4IV ACGT 1 cut(s) 656
HpyCH4V TGCA 7 cut(s) 183, 274, 688, 720, 739, 870, 1000
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
HpyF3I CTNAG 2 cut(s) 12, 479
HpySE526I ACGT 1 cut(s) 656
Hsp92I GRCGYC 1 cut(s) 54
Hsp92II CATG 5 cut(s) 45, 192, 278, 1004, 1030
KspAI GTTAAC 1 cut(s) 654
KspI CCGCGG 1 cut(s) 616
Kzo9I GATC 4 cut(s) 45, 76, 705, 799
LmnI GCTCC 2 cut(s) 565, 861
Lsp1109I GCAGC 2 cut(s) 144, 854
LweI GCATC 1 cut(s) 209
MaeI CTAG 1 cut(s) 164
MaeII ACGT 1 cut(s) 656
MaeIII GTNAC 1 cut(s) 784
MalI GATC 4 cut(s) 47, 78, 707, 801
MboI GATC 4 cut(s) 45, 76, 705, 799
MboII GAAGA 8 cut(s) 28, 31, 105, 452, 926, 938, 1021, 1072
MfeI CAATTG 1 cut(s) 780
MflI RGATCY 1 cut(s) 799
MhlI GDGCHC 2 cut(s) 252, 570
MluCI AATT 8 cut(s) 110, 299, 339, 377, 543, 597, 780, 929
MlyI GAGTC 4 cut(s) 73, 161, 343, 742
MmeI TCCRAC 2 cut(s) 124, 441
MnlI CCTC 6 cut(s) 94, 436, 457, 575, 640, 1044
Mph1103I ATGCAT 1 cut(s) 276
MseI TTAA 5 cut(s) 653, 812, 888, 1022, 1034
MslI CAYNNNNRTG 1 cut(s) 269
MspA1I CMGCKG 1 cut(s) 615
MspI CCGG 4 cut(s) 295, 366, 797, 993
MspR9I CCNGG 4 cut(s) 295, 426, 698, 818
MunI CAATTG 1 cut(s) 780
MvaI CCWGG 3 cut(s) 426, 698, 818
MvnI CGCG 1 cut(s) 615
MwoI GCNNNNNNNGC 1 cut(s) 34
NciI CCSGG 1 cut(s) 295
NcoI CCATGG 1 cut(s) 41
NdeII GATC 4 cut(s) 45, 76, 705, 799
NlaIII CATG 5 cut(s) 45, 192, 278, 1004, 1030
NlaIV GGNNCC 1 cut(s) 307
NmuCI GTSAC 1 cut(s) 784
NsiI ATGCAT 1 cut(s) 276
PceI AGGCCT 1 cut(s) 446
PcsI WCGNNNNNNNCGW 2 cut(s) 54, 349
PfeI GAWTC 3 cut(s) 618, 693, 1039
PflFI GACNNNGTC 1 cut(s) 53
PinAI ACCGGT 1 cut(s) 365
PkrI GCNGC 3 cut(s) 159, 199, 869
PleI GAGTC 4 cut(s) 72, 160, 343, 741
PpsI GAGTC 4 cut(s) 72, 160, 343, 741
Psp6I CCWGG 3 cut(s) 424, 696, 816
PspGI CCWGG 3 cut(s) 424, 696, 816
PspN4I GGNNCC 1 cut(s) 307
PspPI GGNCC 2 cut(s) 305, 977
PsuI RGATCY 1 cut(s) 799
PsyI GACNNNGTC 1 cut(s) 53
RsaI GTAC 4 cut(s) 194, 335, 436, 702
RsaNI GTAC 4 cut(s) 193, 334, 435, 701
RseI CAYNNNNRTG 1 cut(s) 269
SacII CCGCGG 1 cut(s) 616
SaqAI TTAA 5 cut(s) 653, 812, 888, 1022, 1034
SatI GCNGC 3 cut(s) 158, 198, 868
Sau3AI GATC 4 cut(s) 45, 76, 705, 799
Sau96I GGNCC 2 cut(s) 305, 977
SchI GAGTC 4 cut(s) 73, 161, 343, 742
ScrFI CCNGG 4 cut(s) 295, 426, 698, 818
SduI GDGCHC 2 cut(s) 252, 570
SetI ASST 9 cut(s) 13, 169, 423, 427, 659, 879, 910, 942, 976
SfaNI GCATC 1 cut(s) 209
Sfr303I CCGCGG 1 cut(s) 616
SgrBI CCGCGG 1 cut(s) 616
SinI GGWCC 1 cut(s) 977
SmiMI CAYNNNNRTG 1 cut(s) 269
SmlI CTYRAG 3 cut(s) 416, 448, 631
SmoI CTYRAG 3 cut(s) 416, 448, 631
Sse9I AATT 8 cut(s) 110, 299, 339, 377, 543, 597, 780, 929
SseBI AGGCCT 1 cut(s) 446
SsiI CCGC 5 cut(s) 198, 593, 613, 615, 862
SspMI CTAG 1 cut(s) 164
StuI AGGCCT 1 cut(s) 446
StyD4I CCNGG 4 cut(s) 293, 424, 696, 816
StyI CCWWGG 1 cut(s) 41
TaaI ACNGT 2 cut(s) 119, 590
TaiI ACGT 1 cut(s) 659
TaqI TCGA 4 cut(s) 48, 62, 91, 282
TasI AATT 8 cut(s) 110, 299, 339, 377, 543, 597, 780, 929
TauI GCSGC 1 cut(s) 200
TfiI GAWTC 3 cut(s) 618, 693, 1039
Tru1I TTAA 5 cut(s) 653, 812, 888, 1022, 1034
Tru9I TTAA 5 cut(s) 653, 812, 888, 1022, 1034
TscAI CASTG 2 cut(s) 271, 722
TseFI GTSAC 1 cut(s) 784
TseI GCWGC 2 cut(s) 157, 867
Tsp45I GTSAC 1 cut(s) 784
TspDTI ATGAA 6 cut(s) 38, 291, 313, 361, 693, 939
TspRI CASTG 2 cut(s) 271, 722
Tth111I GACNNNGTC 1 cut(s) 53
VpaK11BI GGWCC 1 cut(s) 977
XapI RAATTY 3 cut(s) 299, 339, 597
XcmI CCANNNNNNNNNTGG 1 cut(s) 145
XspI CTAG 1 cut(s) 164
Zsp2I ATGCAT 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.