RLG00000016486

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000886
Physical Location & Seq
Forward (+)
7021848 .. 7022912
1065 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016486

Sequence Viewer

Length: 1065 bp
ATGTTGACGGACGGCGTCGTTTTGAAGAAGGCAAGATTGGTCGAAGAAGAAGCGCAGAGTGAGAAGGAGGAGCGAAGAAGATGGGAGGAGATGGACATGGATTGCTTAGCGAATGTGTTTAGCAAAGCTGGAATAGAGTCACTGGTTTTGGATGTCCCTTTTGTCTGTAAGTCCTGGTACAGAGCTAGCCTCAGTCCTATATGCTGGACAAGCCTTTACTTTCCAGACTATAATCCTCCTCCTCTGTTCGTTAATAATGTTGAAGAAATTGGACCTCAAAGTTTCGGTACATTTTACGATAAGTTTGTAGATGAATATGGAATCGATAAGAGCCGATTTTCGATTACTGATTTTGTAAAGTTGGTAGTGGAACGGAGCAAAGGGAAGGCTACTCGACTCCAGCTACCCATGTGTAGTACAGAAACATGTTTGAGATATGTTTCAGATGCATGTCCTCTGCTTAAAACTTTAATGTTCATGGATGATCCGGTGATTTTCAAGAGTTCTCAAATTCTTCCGGAAGTGATTGGAAAGTGGAAGTTTTTGGAGAGCTTGCATTTGGGGGGCAGCTTGGTGCTCGTTGGTGAGCAGTCTAGCAAGGGAAAATACTTGAGTAAAGATTTCCGGGAGTTGTTGACATCGGAATGTCCGAGCTGCTATAATGTTTTGGAGAGAATCCTTGTGCAGATTGGCACTCACTGCAAGCATTTTAGGCGGTTAAGTCTTGTACTAGTCCCTTTTGGTCGAGTTGAGGCATTGACAATTGTGAACTTTCTGCCACAACTTCGGAGCATAAAATTGGTGGGCAGGTGCCTCATCGAAAGGGATAGCCTTTTCACAATAGTTCGGGGATGCAAAGAGCTCCAGCTTTTTTATGCCATTAACTGTGTAGGCTTTGAAGATGATGATGAAGAAATATACAACCTTGCTTGCCAGACTGGTAAGGTTGTATGTGAGGACTGTGTAGGCCATGATGAATTCGAATCAGAGTTAGATGGCTTGGCTCTAGACATACCTACTTTATTGAGGAAAGTTGTATTCACCATGTTGCGTATGCGGGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

355

Amino Acids

40.43

Weight (kDa)

5.31

Isoelectric Point (pI)

54.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 798
Acc36I ACCTGC 1 cut(s) 798
AccB1I GGYRCC 1 cut(s) 810
AccIII TCCGGA 1 cut(s) 517
AciI CCGC 2 cut(s) 715, 1057
AclWI GGATC 1 cut(s) 479
AcsI RAATTY 2 cut(s) 510, 977
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 4 cut(s) 179, 289, 418, 729
AflIII ACRYGT 1 cut(s) 425
AgsI TTSAA 4 cut(s) 25, 263, 499, 899
AhlI ACTAGT 1 cut(s) 730
AjnI CCWGG 1 cut(s) 173
AjuI GAANNNNNNNTTGG 2 cut(s) 20, 52
AluBI AGCT 8 cut(s) 128, 185, 403, 552, 570, 654, 862, 868
AluI AGCT 8 cut(s) 128, 185, 403, 552, 570, 654, 862, 868
Alw21I GWGCWC 2 cut(s) 579, 864
AlwI GGATC 1 cut(s) 479
Aor13HI TCCGGA 1 cut(s) 517
AoxI GGCC 1 cut(s) 967
ApeKI GCWGC 2 cut(s) 567, 654
ApoI RAATTY 2 cut(s) 510, 977
AspLEI GCGC 1 cut(s) 55
AspS9I GGNCC 1 cut(s) 272
AsuC2I CCSGG 1 cut(s) 626
AsuHPI GGTGA 3 cut(s) 502, 596, 1033
AsuII TTCGAA 1 cut(s) 981
AsuNHI GCTAGC 1 cut(s) 185
AvaII GGWCC 1 cut(s) 272
BanI GGYRCC 1 cut(s) 810
BanII GRGCYC 1 cut(s) 864
Bbv12I GWGCWC 2 cut(s) 579, 864
BbvI GCAGC 2 cut(s) 579, 641
BccI CCATC 3 cut(s) 75, 85, 989
BceAI ACGGC 1 cut(s) 28
BciT130I CCWGG 1 cut(s) 175
BcnI CCSGG 1 cut(s) 626
BcuI ACTAGT 1 cut(s) 730
BfaI CTAG 4 cut(s) 186, 594, 731, 1007
BfuAI ACCTGC 1 cut(s) 798
BisI GCNGC 2 cut(s) 568, 655
BlpI GCTNAGC 1 cut(s) 106
BlsI GCNGC 2 cut(s) 569, 656
Bme1390I CCNGG 2 cut(s) 175, 626
Bme18I GGWCC 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 272
BmiI GGNNCC 1 cut(s) 812
BmrFI CCNGG 2 cut(s) 175, 626
BmsI GCATC 2 cut(s) 436, 842
BmtI GCTAGC 1 cut(s) 189
BplI GAGNNNNNCTC 2 cut(s) 174, 206
BpmI CTGGAG 2 cut(s) 383, 848
Bpu1102I GCTNAGC 1 cut(s) 106
Bpu14I TTCGAA 1 cut(s) 981
BpuEI CTTGAG 1 cut(s) 631
BpuMI CCSGG 1 cut(s) 626
Bsa29I ATCGAT 1 cut(s) 324
BsaHI GRCGYC 1 cut(s) 15
BsaWI WCCGGW 2 cut(s) 487, 517
Bse1I ACTGG 2 cut(s) 147, 943
BseAI TCCGGA 1 cut(s) 517
BseBI CCWGG 1 cut(s) 175
BseCI ATCGAT 1 cut(s) 324
BseGI GGATG 3 cut(s) 157, 487, 857
BseMII CTCAG 1 cut(s) 205
BseNI ACTGG 2 cut(s) 147, 943
BseRI GAGGAG 4 cut(s) 83, 101, 228, 231
BseXI GCAGC 2 cut(s) 579, 641
BsgI GTGCAG 1 cut(s) 704
BshFI GGCC 1 cut(s) 969
BshNI GGYRCC 1 cut(s) 810
BshVI ATCGAT 1 cut(s) 324
BsiHKAI GWGCWC 2 cut(s) 579, 864
BsiSI CCGG 3 cut(s) 488, 518, 625
BslFI GGGAC 2 cut(s) 140, 719
BsmFI GGGAC 2 cut(s) 140, 719
BsnI GGCC 1 cut(s) 969
Bsp119I TTCGAA 1 cut(s) 981
Bsp1286I GDGCHC 2 cut(s) 579, 864
Bsp13I TCCGGA 1 cut(s) 517
Bsp143I GATC 1 cut(s) 484
Bsp1720I GCTNAGC 1 cut(s) 106
BspACI CCGC 2 cut(s) 715, 1057
BspANI GGCC 1 cut(s) 969
BspCNI CTCAG 1 cut(s) 204
BspDI ATCGAT 1 cut(s) 324
BspEI TCCGGA 1 cut(s) 517
BspLI GGNNCC 1 cut(s) 812
BspMI ACCTGC 1 cut(s) 798
BspOI GCTAGC 1 cut(s) 189
BspPI GGATC 1 cut(s) 479
BspT104I TTCGAA 1 cut(s) 981
BspT107I GGYRCC 1 cut(s) 810
BsrI ACTGG 2 cut(s) 147, 943
BssMI GATC 1 cut(s) 484
BssNI GRCGYC 1 cut(s) 15
Bst2UI CCWGG 1 cut(s) 175
Bst4CI ACNGT 2 cut(s) 887, 962
BstACI GRCGYC 1 cut(s) 15
BstAPI GCANNNNNTGC 1 cut(s) 699
BstBI TTCGAA 1 cut(s) 981
BstC8I GCNNGC 4 cut(s) 187, 554, 704, 931
BstDEI CTNAG 2 cut(s) 106, 191
BstF5I GGATG 3 cut(s) 157, 487, 857
BstHHI GCGC 1 cut(s) 55
BstKTI GATC 1 cut(s) 487
BstMBI GATC 1 cut(s) 484
BstMWI GCNNNNNNNGC 3 cut(s) 210, 699, 712
BstNI CCWGG 1 cut(s) 175
BstNSI RCATGY 2 cut(s) 429, 453
BstSCI CCNGG 2 cut(s) 173, 624
BstV1I GCAGC 2 cut(s) 579, 641
Bsu15I ATCGAT 1 cut(s) 324
BsuRI GGCC 1 cut(s) 969
BsuTUI ATCGAT 1 cut(s) 324
BtsCI GGATG 3 cut(s) 157, 487, 857
BtsI GCAGTG 1 cut(s) 697
BtsIMutI CAGTG 2 cut(s) 140, 697
BveI ACCTGC 1 cut(s) 798
Cac8I GCNNGC 4 cut(s) 187, 554, 704, 931
CfoI GCGC 1 cut(s) 55
Cfr13I GGNCC 1 cut(s) 272
ClaI ATCGAT 1 cut(s) 324
CseI GACGC 1 cut(s) 4
Csp6I GTAC 4 cut(s) 178, 288, 417, 728
CviAII CATG 7 cut(s) 97, 409, 426, 450, 478, 971, 1045
CviQI GTAC 4 cut(s) 178, 288, 417, 728
DdeI CTNAG 2 cut(s) 106, 191
DpnI GATC 1 cut(s) 486
DpnII GATC 1 cut(s) 484
Ecl136II GAGCTC 1 cut(s) 862
Eco24I GRGCYC 1 cut(s) 864
Eco47I GGWCC 1 cut(s) 272
Eco53kI GAGCTC 1 cut(s) 862
EcoICRI GAGCTC 1 cut(s) 862
EcoRI GAATTC 1 cut(s) 977
EcoRII CCWGG 1 cut(s) 173
EcoT22I ATGCAT 1 cut(s) 451
EcoT38I GRGCYC 1 cut(s) 864
FaeI CATG 7 cut(s) 100, 412, 429, 453, 481, 974, 1048
FaqI GGGAC 2 cut(s) 140, 719
FatI CATG 7 cut(s) 96, 408, 425, 449, 477, 970, 1044
FauI CCCGC 1 cut(s) 1050
Fnu4HI GCNGC 2 cut(s) 568, 655
FokI GGATG 3 cut(s) 164, 494, 864
FriOI GRGCYC 1 cut(s) 864
Fsp4HI GCNGC 2 cut(s) 568, 655
FspBI CTAG 4 cut(s) 186, 594, 731, 1007
GlaI GCGC 1 cut(s) 54
GluI GCNGC 2 cut(s) 568, 655
GsuI CTGGAG 2 cut(s) 383, 848
HaeIII GGCC 1 cut(s) 969
HapII CCGG 3 cut(s) 488, 518, 625
HgaI GACGC 1 cut(s) 4
HhaI GCGC 1 cut(s) 55
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 7 cut(s) 100, 412, 429, 453, 481, 974, 1048
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HincII GTYRAC 2 cut(s) 6, 636
HindII GTYRAC 2 cut(s) 6, 636
HinfI GANTC 5 cut(s) 137, 321, 396, 675, 983
HpaII CCGG 3 cut(s) 488, 518, 625
HphI GGTGA 3 cut(s) 502, 596, 1033
Hpy166II GTNNAC 3 cut(s) 6, 636, 769
Hpy188I TCNGA 5 cut(s) 445, 643, 651, 789, 988
Hpy188III TCNNGA 4 cut(s) 224, 499, 518, 1007
Hpy8I GTNNAC 3 cut(s) 6, 636, 769
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 3 cut(s) 22, 58, 379
HpyCH4III ACNGT 2 cut(s) 887, 962
HpyCH4V TGCA 5 cut(s) 449, 556, 685, 702, 855
HpyF10VI GCNNNNNNNGC 3 cut(s) 210, 699, 712
HpyF3I CTNAG 2 cut(s) 106, 191
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 7 cut(s) 100, 412, 429, 453, 481, 974, 1048
HspAI GCGC 1 cut(s) 53
Kpn2I TCCGGA 1 cut(s) 517
Kzo9I GATC 1 cut(s) 484
LmnI GCTCC 4 cut(s) 70, 375, 789, 867
Lsp1109I GCAGC 2 cut(s) 579, 641
LweI GCATC 2 cut(s) 436, 842
MaeI CTAG 4 cut(s) 186, 594, 731, 1007
MaeIII GTNAC 1 cut(s) 138
MalI GATC 1 cut(s) 486
MboI GATC 1 cut(s) 484
MboII GAAGA 9 cut(s) 37, 56, 59, 87, 90, 275, 506, 911, 923
MfeI CAATTG 1 cut(s) 762
MhlI GDGCHC 2 cut(s) 579, 864
MluCI AATT 5 cut(s) 267, 510, 762, 797, 977
MlyI GAGTC 2 cut(s) 146, 390
Mph1103I ATGCAT 1 cut(s) 451
MroI TCCGGA 1 cut(s) 517
MseI TTAA 6 cut(s) 252, 462, 470, 719, 882, 1063
MslI CAYNNNNRTG 1 cut(s) 643
MspI CCGG 3 cut(s) 488, 518, 625
MspR9I CCNGG 2 cut(s) 175, 626
MunI CAATTG 1 cut(s) 762
MvaI CCWGG 1 cut(s) 175
MwoI GCNNNNNNNGC 3 cut(s) 210, 699, 712
NciI CCSGG 1 cut(s) 626
NdeII GATC 1 cut(s) 484
NheI GCTAGC 1 cut(s) 185
NlaIII CATG 7 cut(s) 100, 412, 429, 453, 481, 974, 1048
NlaIV GGNNCC 1 cut(s) 812
NmuCI GTSAC 1 cut(s) 138
NsiI ATGCAT 1 cut(s) 451
NspI RCATGY 2 cut(s) 429, 453
NspV TTCGAA 1 cut(s) 981
PaqCI CACCTGC 1 cut(s) 798
PciI ACATGT 1 cut(s) 425
PcsI WCGNNNNNNNCGW 1 cut(s) 647
PfeI GAWTC 3 cut(s) 321, 675, 983
PflFI GACNNNGTC 1 cut(s) 14
PfoI TCCNGGA 1 cut(s) 624
PkrI GCNGC 2 cut(s) 569, 656
PleI GAGTC 2 cut(s) 145, 390
PpsI GAGTC 2 cut(s) 145, 390
PscI ACATGT 1 cut(s) 425
Psp124BI GAGCTC 1 cut(s) 864
Psp6I CCWGG 1 cut(s) 173
PspGI CCWGG 1 cut(s) 173
PspN4I GGNNCC 1 cut(s) 812
PspPI GGNCC 1 cut(s) 272
PsyI GACNNNGTC 1 cut(s) 14
RsaI GTAC 4 cut(s) 179, 289, 418, 729
RsaNI GTAC 4 cut(s) 178, 288, 417, 728
RseI CAYNNNNRTG 1 cut(s) 643
SacI GAGCTC 1 cut(s) 864
SaqAI TTAA 6 cut(s) 252, 462, 470, 719, 882, 1063
SatI GCNGC 2 cut(s) 568, 655
Sau3AI GATC 1 cut(s) 484
Sau96I GGNCC 1 cut(s) 272
SchI GAGTC 2 cut(s) 146, 390
ScrFI CCNGG 2 cut(s) 175, 626
SduI GDGCHC 2 cut(s) 579, 864
SfaNI GCATC 2 cut(s) 436, 842
SfuI TTCGAA 1 cut(s) 981
SinI GGWCC 1 cut(s) 272
SmiMI CAYNNNNRTG 1 cut(s) 643
SmlI CTYRAG 1 cut(s) 610
SmoI CTYRAG 1 cut(s) 610
SpeI ACTAGT 1 cut(s) 730
Sse9I AATT 5 cut(s) 267, 510, 762, 797, 977
SsiI CCGC 2 cut(s) 715, 1057
SspMI CTAG 4 cut(s) 186, 594, 731, 1007
SstI GAGCTC 1 cut(s) 864
StyD4I CCNGG 2 cut(s) 173, 624
TaaI ACNGT 2 cut(s) 887, 962
TaqI TCGA 7 cut(s) 42, 324, 341, 394, 745, 819, 981
TasI AATT 5 cut(s) 267, 510, 762, 797, 977
TatI WGTACW 2 cut(s) 416, 727
TfiI GAWTC 3 cut(s) 321, 675, 983
Tru1I TTAA 6 cut(s) 252, 462, 470, 719, 882, 1063
Tru9I TTAA 6 cut(s) 252, 462, 470, 719, 882, 1063
TscAI CASTG 2 cut(s) 147, 704
TseFI GTSAC 1 cut(s) 138
TseI GCWGC 2 cut(s) 567, 654
Tsp45I GTSAC 1 cut(s) 138
TspDTI ATGAA 4 cut(s) 327, 466, 924, 990
TspGWI ACGGA 2 cut(s) 23, 388
TspRI CASTG 2 cut(s) 147, 704
Tth111I GACNNNGTC 1 cut(s) 14
VpaK11BI GGWCC 1 cut(s) 272
XapI RAATTY 2 cut(s) 510, 977
XbaI TCTAGA 1 cut(s) 1006
XceI RCATGY 2 cut(s) 429, 453
XspI CTAG 4 cut(s) 186, 594, 731, 1007
Zsp2I ATGCAT 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.