RLG00000032111

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000886
Physical Location & Seq
Reverse (-)
11061169 .. 11062188
1020 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032111

Sequence Viewer

Length: 1020 bp
ATGTCGACGGACGGCGTCATTTCGGAGAAGGAGGACAAGCGAAGAAGAAGAAGATGGGAGGAGTTAGACATGGACTGCTTATCGAAGGTGTTTAACAGAGTTGGAATGGAGTCACTGATTTTGGCGGTGCCTTTTGTCTGCAAGTCGTGGAATAAAGCTAGCCTCAGTCCTTTATCCTGGCAAGAGCTCTCATTTCCAGAGTTAACGCGTTGTCCTTGGAGTTTCGATGATGATGATGATGATGAAGCTCGGAGTTTCGGTACATTTTATGATAAGTTTATGGATCATTTTGGAATCAATAGGAGCACTTTCTCAATCACTGGTTTTGTGAAGTCTGTAGTCGATCGGAGCAAAGGGGGTGCTACCCTGGTCTGGCTGCCTGCATTCTGTACAGAGGAAGCATTGAGATATGTTTCAGATGCGTGTCCTCTCCTCAAGTTTTTGGGTTTTGTGGATGACTTGGTGCTTTTTAAGCATTCGCAAGTTGTTCCGGAAGTGATTGGGAAATGGAAATATTTGGAGGTGTTGCATTTGGGGGGCAGCTCGGTGCCTGTAATGCAGCAGATGTTGATGGAGCTGAGAAAAGGAAAGCGCTTTAGTGAACGTTTCAAGGCGATGTTTGCGTCGGAAAGTCCTGACCGCTATAATGTTTTGGAGAGAATCGTTGTGCAAATTGGCGCTCACTGCAAAAGATTTACGACTTTGATTCTTTATGAAGTCGATCTTGCTCAAGTTGAGGCATTGGCAATTGTGAACTTGCTGCCAAACCTTCGGTGCATTTCGGCAACAGGGTGTACCATTGAAAGGGATACCGTTGTAACAATAATGCAGGGATGCAAAAATCTTGTGCTTTTTCGTGCCAATCATTGTGGCGGTTTTGAAGATAATGATGGAGAAATATCCAAGCTTGCTTCCAAGACTCGTCATTTTGCATGTGAGGGTTGTTCAGACCTTCCGGCCCGTGCCACTGCATGGAGGAAGTATGTTTTCATCAGGATTGGATGGGATATTGAGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

340

Amino Acids

38.61

Weight (kDa)

6.35

Isoelectric Point (pI)

52.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 127, 547
AccB7I CCANNNNNTGG 1 cut(s) 972
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 208
AccIII TCCGGA 1 cut(s) 490
AciI CCGC 3 cut(s) 125, 640, 873
AclI AACGTT 1 cut(s) 604
AclWI GGATC 1 cut(s) 291
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 3 cut(s) 262, 391, 796
AfeI AGCGCT 1 cut(s) 593
AfiI CCNNNNNNNGG 3 cut(s) 372, 804, 972
AflIII ACRYGT 1 cut(s) 206
AgsI TTSAA 3 cut(s) 610, 803, 881
AjnI CCWGG 2 cut(s) 176, 366
AluBI AGCT 6 cut(s) 158, 187, 248, 543, 577, 907
AluI AGCT 6 cut(s) 158, 187, 248, 543, 577, 907
Alw21I GWGCWC 2 cut(s) 189, 308
AlwI GGATC 1 cut(s) 291
Aor13HI TCCGGA 1 cut(s) 490
Aor51HI AGCGCT 1 cut(s) 593
AoxI GGCC 1 cut(s) 957
ApeKI GCWGC 4 cut(s) 376, 540, 559, 760
AspLEI GCGC 2 cut(s) 594, 680
AspS9I GGNCC 1 cut(s) 958
AsuNHI GCTAGC 1 cut(s) 158
BaeI ACNNNNGTAYC 2 cut(s) 801, 834
BanI GGYRCC 2 cut(s) 127, 547
BanII GRGCYC 1 cut(s) 189
Bbv12I GWGCWC 2 cut(s) 189, 308
BbvI GCAGC 4 cut(s) 363, 552, 571, 747
BccI CCATC 4 cut(s) 48, 565, 884, 996
BceAI ACGGC 1 cut(s) 28
BciT130I CCWGG 2 cut(s) 178, 368
BciVI GTATCC 1 cut(s) 802
BfaI CTAG 1 cut(s) 159
BfmI CTRYAG 1 cut(s) 336
BfoI RGCGCY 2 cut(s) 595, 681
BfuI GTATCC 1 cut(s) 802
BisI GCNGC 4 cut(s) 377, 541, 560, 761
BlsI GCNGC 4 cut(s) 378, 542, 561, 762
Bme1390I CCNGG 2 cut(s) 178, 368
BmgT120I GGNCC 1 cut(s) 958
BmiI GGNNCC 2 cut(s) 129, 549
BmrFI CCNGG 2 cut(s) 178, 368
BmsI GCATC 2 cut(s) 409, 824
BmtI GCTAGC 1 cut(s) 162
BpuEI CTTGAG 2 cut(s) 419, 714
BsaHI GRCGYC 1 cut(s) 15
BsaJI CCNNGG 2 cut(s) 215, 366
BsaWI WCCGGW 1 cut(s) 490
BsaXI ACNNNNNCTCC 2 cut(s) 244, 274
Bsc4I CCNNNNNNNGG 3 cut(s) 372, 804, 972
Bse1I ACTGG 1 cut(s) 325
BseAI TCCGGA 1 cut(s) 490
BseBI CCWGG 2 cut(s) 178, 368
BseDI CCNNGG 2 cut(s) 215, 366
BseGI GGATG 3 cut(s) 460, 839, 1007
BseLI CCNNNNNNNGG 3 cut(s) 372, 804, 972
BseMII CTCAG 2 cut(s) 178, 569
BseNI ACTGG 1 cut(s) 325
BseRI GAGGAG 2 cut(s) 74, 422
BseXI GCAGC 4 cut(s) 363, 552, 571, 747
Bsh1236I CGCG 1 cut(s) 208
Bsh1285I CGRYCG 1 cut(s) 346
BshFI GGCC 1 cut(s) 959
BshNI GGYRCC 2 cut(s) 127, 547
BsiEI CGRYCG 1 cut(s) 346
BsiHKAI GWGCWC 2 cut(s) 189, 308
BsiSI CCGG 2 cut(s) 491, 956
BslI CCNNNNNNNGG 3 cut(s) 372, 804, 972
BsmI GAATGC 2 cut(s) 383, 475
BsnI GGCC 1 cut(s) 959
Bsp1286I GDGCHC 2 cut(s) 189, 308
Bsp13I TCCGGA 1 cut(s) 490
Bsp1407I TGTACA 1 cut(s) 389
Bsp143I GATC 3 cut(s) 283, 343, 721
BspACI CCGC 3 cut(s) 125, 640, 873
BspANI GGCC 1 cut(s) 959
BspCNI CTCAG 2 cut(s) 177, 570
BspEI TCCGGA 1 cut(s) 490
BspFNI CGCG 1 cut(s) 208
BspLI GGNNCC 2 cut(s) 129, 549
BspOI GCTAGC 1 cut(s) 162
BspPI GGATC 1 cut(s) 291
BspT107I GGYRCC 2 cut(s) 127, 547
BsrGI TGTACA 1 cut(s) 389
BsrI ACTGG 1 cut(s) 325
BssECI CCNNGG 2 cut(s) 215, 366
BssMI GATC 3 cut(s) 283, 343, 721
BssNI GRCGYC 1 cut(s) 15
BssT1I CCWWGG 1 cut(s) 215
Bst2UI CCWGG 2 cut(s) 178, 368
Bst4CI ACNGT 1 cut(s) 814
BstACI GRCGYC 1 cut(s) 15
BstAUI TGTACA 1 cut(s) 389
BstC8I GCNNGC 3 cut(s) 160, 381, 909
BstDEI CTNAG 2 cut(s) 164, 578
BstF5I GGATG 3 cut(s) 460, 839, 1007
BstFNI CGCG 1 cut(s) 208
BstH2I RGCGCY 2 cut(s) 595, 681
BstHHI GCGC 2 cut(s) 594, 680
BstKTI GATC 3 cut(s) 286, 346, 724
BstMBI GATC 3 cut(s) 283, 343, 721
BstMCI CGRYCG 1 cut(s) 346
BstMWI GCNNNNNNNGC 4 cut(s) 472, 556, 620, 684
BstNI CCWGG 2 cut(s) 178, 368
BstNSI RCATGY 1 cut(s) 936
BstSCI CCNGG 2 cut(s) 176, 366
BstSFI CTRYAG 1 cut(s) 336
BstUI CGCG 1 cut(s) 208
BstV1I GCAGC 4 cut(s) 363, 552, 571, 747
BsuI GTATCC 1 cut(s) 802
BsuRI GGCC 1 cut(s) 959
BtgZI GCGATG 1 cut(s) 629
BtsCI GGATG 3 cut(s) 460, 839, 1007
BtsI GCAGTG 2 cut(s) 682, 966
BtsIMutI CAGTG 4 cut(s) 113, 318, 682, 966
Cac8I GCNNGC 3 cut(s) 160, 381, 909
CfoI GCGC 2 cut(s) 594, 680
Cfr13I GGNCC 1 cut(s) 958
CseI GACGC 2 cut(s) 4, 612
Csp6I GTAC 3 cut(s) 261, 390, 795
CspCI CAANNNNNGTGG 2 cut(s) 850, 885
CviAII CATG 3 cut(s) 70, 933, 972
CviJI RGCY 9 cut(s) 158, 162, 187, 248, 376, 543, 577, 907, 959
CviKI_1 RGCY 9 cut(s) 158, 162, 187, 248, 376, 543, 577, 907, 959
CviQI GTAC 3 cut(s) 261, 390, 795
DdeI CTNAG 2 cut(s) 164, 578
DpnI GATC 3 cut(s) 285, 345, 723
DpnII GATC 3 cut(s) 283, 343, 721
Ecl136II GAGCTC 1 cut(s) 187
Eco130I CCWWGG 1 cut(s) 215
Eco24I GRGCYC 1 cut(s) 189
Eco47III AGCGCT 1 cut(s) 593
Eco53kI GAGCTC 1 cut(s) 187
EcoICRI GAGCTC 1 cut(s) 187
EcoRII CCWGG 2 cut(s) 176, 366
EcoT14I CCWWGG 1 cut(s) 215
EcoT38I GRGCYC 1 cut(s) 189
ErhI CCWWGG 1 cut(s) 215
FaeI CATG 3 cut(s) 73, 936, 975
FaiI YATR 9 cut(s) 71, 270, 281, 411, 645, 714, 934, 973, 984
FalI AAGNNNNNCTT 2 cut(s) 708, 740
FatI CATG 3 cut(s) 69, 932, 971
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 4 cut(s) 377, 541, 560, 761
FokI GGATG 3 cut(s) 467, 846, 1014
FriOI GRGCYC 1 cut(s) 189
Fsp4HI GCNGC 4 cut(s) 377, 541, 560, 761
FspBI CTAG 1 cut(s) 159
GlaI GCGC 2 cut(s) 593, 679
GluI GCNGC 4 cut(s) 377, 541, 560, 761
HaeII RGCGCY 2 cut(s) 595, 681
HaeIII GGCC 1 cut(s) 959
HapII CCGG 2 cut(s) 491, 956
HgaI GACGC 2 cut(s) 4, 612
HhaI GCGC 2 cut(s) 594, 680
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 3 cut(s) 73, 936, 975
Hin6I GCGC 2 cut(s) 592, 678
HinP1I GCGC 2 cut(s) 592, 678
HincII GTYRAC 2 cut(s) 6, 204
HindII GTYRAC 2 cut(s) 6, 204
HindIII AAGCTT 1 cut(s) 905
HinfI GANTC 5 cut(s) 110, 294, 660, 706, 919
HpaI GTTAAC 1 cut(s) 204
HpaII CCGG 2 cut(s) 491, 956
Hpy166II GTNNAC 5 cut(s) 6, 204, 602, 754, 795
Hpy188I TCNGA 6 cut(s) 25, 252, 348, 418, 628, 949
Hpy188III TCNNGA 4 cut(s) 197, 491, 635, 994
Hpy8I GTNNAC 5 cut(s) 6, 204, 602, 754, 795
Hpy99I CGWCG 2 cut(s) 10, 628
HpyAV CCTTC 4 cut(s) 22, 79, 779, 962
HpyCH4III ACNGT 1 cut(s) 814
HpyCH4IV ACGT 1 cut(s) 604
HpyF10VI GCNNNNNNNGC 4 cut(s) 472, 556, 620, 684
HpyF3I CTNAG 2 cut(s) 164, 578
HpySE526I ACGT 1 cut(s) 604
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 3 cut(s) 73, 936, 975
HspAI GCGC 2 cut(s) 592, 678
Kpn2I TCCGGA 1 cut(s) 490
KspAI GTTAAC 1 cut(s) 204
Kzo9I GATC 3 cut(s) 283, 343, 721
LmnI GCTCC 3 cut(s) 303, 348, 574
Lsp1109I GCAGC 4 cut(s) 363, 552, 571, 747
LweI GCATC 2 cut(s) 409, 824
MaeI CTAG 1 cut(s) 159
MaeII ACGT 1 cut(s) 604
MaeIII GTNAC 2 cut(s) 111, 817
MalI GATC 3 cut(s) 285, 345, 723
MboI GATC 3 cut(s) 283, 343, 721
MboII GAAGA 5 cut(s) 54, 57, 60, 63, 893
MfeI CAATTG 1 cut(s) 747
MhlI GDGCHC 2 cut(s) 189, 308
MluCI AATT 2 cut(s) 672, 747
MluI ACGCGT 1 cut(s) 206
MlyI GAGTC 2 cut(s) 119, 913
MmeI TCCRAC 2 cut(s) 82, 606
MroI TCCGGA 1 cut(s) 490
MseI TTAA 3 cut(s) 93, 203, 471
MspI CCGG 2 cut(s) 491, 956
MspR9I CCNGG 2 cut(s) 178, 368
MunI CAATTG 1 cut(s) 747
Mva1269I GAATGC 2 cut(s) 383, 475
MvaI CCWGG 2 cut(s) 178, 368
MvnI CGCG 1 cut(s) 208
MwoI GCNNNNNNNGC 4 cut(s) 472, 556, 620, 684
NdeII GATC 3 cut(s) 283, 343, 721
NheI GCTAGC 1 cut(s) 158
NlaIII CATG 3 cut(s) 73, 936, 975
NlaIV GGNNCC 2 cut(s) 129, 549
NmuCI GTSAC 1 cut(s) 111
NspI RCATGY 1 cut(s) 936
PctI GAATGC 2 cut(s) 383, 475
PfeI GAWTC 3 cut(s) 294, 660, 706
PflFI GACNNNGTC 1 cut(s) 14
PflMI CCANNNNNTGG 1 cut(s) 972
PkrI GCNGC 4 cut(s) 378, 542, 561, 762
Ple19I CGATCG 1 cut(s) 346
PleI GAGTC 2 cut(s) 118, 913
PpsI GAGTC 2 cut(s) 118, 913
Psp124BI GAGCTC 1 cut(s) 189
Psp1406I AACGTT 1 cut(s) 604
Psp6I CCWGG 2 cut(s) 176, 366
PspGI CCWGG 2 cut(s) 176, 366
PspN4I GGNNCC 2 cut(s) 129, 549
PspPI GGNCC 1 cut(s) 958
PsyI GACNNNGTC 1 cut(s) 14
PvuI CGATCG 1 cut(s) 346
RsaI GTAC 3 cut(s) 262, 391, 796
RsaNI GTAC 3 cut(s) 261, 390, 795
SacI GAGCTC 1 cut(s) 189
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 3 cut(s) 93, 203, 471
SatI GCNGC 4 cut(s) 377, 541, 560, 761
Sau3AI GATC 3 cut(s) 283, 343, 721
Sau96I GGNCC 1 cut(s) 958
SchI GAGTC 2 cut(s) 119, 913
ScrFI CCNGG 2 cut(s) 178, 368
SduI GDGCHC 2 cut(s) 189, 308
SfaNI GCATC 2 cut(s) 409, 824
SfcI CTRYAG 1 cut(s) 336
SmlI CTYRAG 2 cut(s) 434, 729
SmoI CTYRAG 2 cut(s) 434, 729
Sse9I AATT 2 cut(s) 672, 747
SsiI CCGC 3 cut(s) 125, 640, 873
SspI AATATT 1 cut(s) 515
SspMI CTAG 1 cut(s) 159
SstI GAGCTC 1 cut(s) 189
StyD4I CCNGG 2 cut(s) 176, 366
StyI CCWWGG 1 cut(s) 215
TaaI ACNGT 1 cut(s) 814
TaiI ACGT 1 cut(s) 607
TaqI TCGA 5 cut(s) 5, 83, 225, 342, 720
TasI AATT 2 cut(s) 672, 747
TatI WGTACW 1 cut(s) 389
TfiI GAWTC 3 cut(s) 294, 660, 706
Tru1I TTAA 3 cut(s) 93, 203, 471
Tru9I TTAA 3 cut(s) 93, 203, 471
TscAI CASTG 4 cut(s) 120, 325, 689, 973
TseFI GTSAC 1 cut(s) 111
TseI GCWGC 4 cut(s) 376, 540, 559, 760
Tsp45I GTSAC 1 cut(s) 111
TspDTI ATGAA 3 cut(s) 258, 729, 979
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 4 cut(s) 120, 325, 689, 973
Tth111I GACNNNGTC 1 cut(s) 14
Van91I CCANNNNNTGG 1 cut(s) 972
XceI RCATGY 1 cut(s) 936
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.