Rh6CG491500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000886
Physical Location & Seq
Forward (+)
65849048 .. 65850358
1311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG491500.1

Sequence Viewer

Length: 678 bp
ATGTGTTTTCAAGAGTTAAAATGGAGTCTCTGTTTTTGGCTGTTCCTTTTGTCTGCAAATCATGGTACGTACAAAACAAGTCTCAATCCTTTGTGCTGGAAACGTCTCTGGTTTCCAGATTTTATACCTTATCCTTTGTTTACTGATAAGGCCGAGGATCGGCTTCAACCTGCTCAGAGTTTTGGTCCCTTTTACGATCAGTTTGTTGATGAATATCGAATAAACAAGACTCGGTTCTCTATCGATGCTTTTGTGAAGTTGGTAGTCGATCGTAGCAATGGAATTGCCACTTCTCTCATACTACCTGAATTCTGTACGGAAGAAGCATTGAGATATGTATCAGATGCATGCCCTCTCCTTTGGGGAGTTTGGTTCACAGATGACCTGGTGCTTTTCAAGAATTCTCAAATTATTGCACAAGTGATTGGCAAGTGGAAATTTTTGGAGTGCTTGTATTTGGGGAGTAGGTTGGTGAAAATTATGCGGCAAAGAAGATTGAGTAAAAAACATTTGAGTGAACATTTTAAAGTGTTGTTGACAGTGGAAAATCCACCCTGCTATAATGTTCTGGATAGAATCCTTGTGCAGAACTGCAGATTGCCACTCACTGCAAACATTTTAAGGAATTATCTATTTCTTCCTGCAATGTTGGTGAAATTGAGGCATCCACAATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

225

Amino Acids

26.58

Weight (kDa)

9.11

Isoelectric Point (pI)

45.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 178
AciI CCGC 1 cut(s) 484
AclWI GGATC 1 cut(s) 165
AcsI RAATTY 3 cut(s) 308, 400, 437
AfaI GTAC 3 cut(s) 67, 71, 316
AfiI CCNNNNNNNGG 1 cut(s) 159
AgsI TTSAA 3 cut(s) 11, 167, 397
AjnI CCWGG 1 cut(s) 384
AleI CACNNNNGTG 1 cut(s) 673
Alw26I GTCTC 3 cut(s) 32, 86, 110
AlwI GGATC 1 cut(s) 165
AoxI GGCC 1 cut(s) 150
ApoI RAATTY 3 cut(s) 308, 400, 437
AspS9I GGNCC 1 cut(s) 185
AsuHPI GGTGA 2 cut(s) 484, 664
AvaII GGWCC 1 cut(s) 185
BciT130I CCWGG 1 cut(s) 386
BcoDI GTCTC 3 cut(s) 32, 86, 110
BfmI CTRYAG 1 cut(s) 592
BfuAI ACCTGC 1 cut(s) 178
BisI GCNGC 1 cut(s) 485
BlsI GCNGC 1 cut(s) 486
Bme1390I CCNGG 1 cut(s) 386
Bme18I GGWCC 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 185
BmiI GGNNCC 1 cut(s) 187
BmrFI CCNGG 1 cut(s) 386
BmsI GCATC 3 cut(s) 235, 334, 673
Bsa29I ATCGAT 1 cut(s) 243
BsaAI YACGTR 1 cut(s) 69
BsaBI GATNNNNATC 2 cut(s) 213, 337
BsaJI CCNNGG 1 cut(s) 153
BsaXI ACNNNNNCTCC 4 cut(s) 16, 46, 437, 467
Bsc4I CCNNNNNNNGG 1 cut(s) 159
Bse3DI GCAATG 2 cut(s) 283, 651
Bse8I GATNNNNATC 2 cut(s) 213, 337
BseBI CCWGG 1 cut(s) 386
BseCI ATCGAT 1 cut(s) 243
BseDI CCNNGG 1 cut(s) 153
BseGI GGATG 1 cut(s) 664
BseJI GATNNNNATC 2 cut(s) 213, 337
BseLI CCNNNNNNNGG 1 cut(s) 159
BseMI GCAATG 2 cut(s) 283, 651
BseMII CTCAG 1 cut(s) 188
BsgI GTGCAG 1 cut(s) 605
Bsh1285I CGRYCG 1 cut(s) 271
BshFI GGCC 1 cut(s) 152
BshVI ATCGAT 1 cut(s) 243
BsiEI CGRYCG 1 cut(s) 271
BslFI GGGAC 1 cut(s) 171
BslI CCNNNNNNNGG 1 cut(s) 159
BsmAI GTCTC 3 cut(s) 32, 86, 110
BsmBI CGTCTC 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 171
BsnI GGCC 1 cut(s) 152
Bsp143I GATC 3 cut(s) 157, 196, 268
BspACI CCGC 1 cut(s) 484
BspANI GGCC 1 cut(s) 152
BspCNI CTCAG 1 cut(s) 187
BspDI ATCGAT 1 cut(s) 243
BspLI GGNNCC 1 cut(s) 187
BspMAI CTGCAG 1 cut(s) 596
BspMI ACCTGC 1 cut(s) 178
BspPI GGATC 1 cut(s) 165
BsrDI GCAATG 2 cut(s) 283, 651
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 3 cut(s) 157, 196, 268
Bst2UI CCWGG 1 cut(s) 386
Bst4CI ACNGT 1 cut(s) 541
BstBAI YACGTR 1 cut(s) 69
BstC8I GCNNGC 1 cut(s) 349
BstDEI CTNAG 1 cut(s) 174
BstF5I GGATG 1 cut(s) 664
BstKTI GATC 3 cut(s) 160, 199, 271
BstMAI GTCTC 3 cut(s) 32, 86, 110
BstMBI GATC 3 cut(s) 157, 196, 268
BstMCI CGRYCG 1 cut(s) 271
BstNI CCWGG 1 cut(s) 386
BstNSI RCATGY 1 cut(s) 351
BstSCI CCNGG 1 cut(s) 384
BstSFI CTRYAG 1 cut(s) 592
BstSNI TACGTA 1 cut(s) 69
Bsu15I ATCGAT 1 cut(s) 243
BsuRI GGCC 1 cut(s) 152
BsuTUI ATCGAT 1 cut(s) 243
BtsCI GGATG 1 cut(s) 664
BtsI GCAGTG 1 cut(s) 606
BtsIMutI CAGTG 2 cut(s) 546, 606
BveI ACCTGC 1 cut(s) 178
Cac8I GCNNGC 1 cut(s) 349
Cfr13I GGNCC 1 cut(s) 185
ClaI ATCGAT 1 cut(s) 243
CsiI ACCWGGT 1 cut(s) 384
Csp6I GTAC 3 cut(s) 66, 70, 315
CviAII CATG 2 cut(s) 62, 348
CviJI RGCY 3 cut(s) 40, 152, 163
CviKI_1 RGCY 3 cut(s) 40, 152, 163
CviQI GTAC 3 cut(s) 66, 70, 315
DdeI CTNAG 1 cut(s) 174
DpnI GATC 3 cut(s) 159, 198, 270
DpnII GATC 3 cut(s) 157, 196, 268
DraI TTTAAA 1 cut(s) 526
Eco105I TACGTA 1 cut(s) 69
Eco47I GGWCC 1 cut(s) 185
EcoRI GAATTC 2 cut(s) 308, 400
EcoRII CCWGG 1 cut(s) 384
EcoT22I ATGCAT 1 cut(s) 349
Esp3I CGTCTC 1 cut(s) 110
FaeI CATG 2 cut(s) 65, 351
FaiI YATR 7 cut(s) 63, 125, 299, 336, 349, 482, 561
FaqI GGGAC 1 cut(s) 171
FatI CATG 2 cut(s) 61, 347
Fnu4HI GCNGC 1 cut(s) 485
FokI GGATG 1 cut(s) 651
Fsp4HI GCNGC 1 cut(s) 485
GluI GCNGC 1 cut(s) 485
HaeIII GGCC 1 cut(s) 152
Hin1II CATG 2 cut(s) 65, 351
HincII GTYRAC 1 cut(s) 537
HindII GTYRAC 1 cut(s) 537
HinfI GANTC 3 cut(s) 25, 229, 576
HphI GGTGA 2 cut(s) 484, 664
Hpy166II GTNNAC 4 cut(s) 141, 375, 518, 537
Hpy188I TCNGA 2 cut(s) 177, 343
Hpy188III TCNNGA 4 cut(s) 11, 116, 397, 569
Hpy8I GTNNAC 4 cut(s) 141, 375, 518, 537
HpyCH4III ACNGT 1 cut(s) 541
HpyCH4IV ACGT 2 cut(s) 68, 103
HpyCH4V TGCA 7 cut(s) 56, 347, 416, 586, 594, 611, 644
HpyF3I CTNAG 1 cut(s) 174
HpySE526I ACGT 2 cut(s) 68, 103
Hsp92II CATG 2 cut(s) 65, 351
Kzo9I GATC 3 cut(s) 157, 196, 268
LweI GCATC 3 cut(s) 235, 334, 673
MabI ACCWGGT 1 cut(s) 384
MaeII ACGT 2 cut(s) 68, 103
MalI GATC 3 cut(s) 159, 198, 270
MboI GATC 3 cut(s) 157, 196, 268
MboII GAAGA 3 cut(s) 332, 504, 629
MfeI CAATTG 1 cut(s) 671
MluCI AATT 9 cut(s) 282, 308, 400, 408, 437, 477, 625, 656, 671
MlyI GAGTC 2 cut(s) 34, 223
MnlI CCTC 3 cut(s) 148, 363, 654
Mph1103I ATGCAT 1 cut(s) 349
MseI TTAA 3 cut(s) 17, 525, 620
MslI CAYNNNNRTG 2 cut(s) 513, 673
MspR9I CCNGG 1 cut(s) 386
MunI CAATTG 1 cut(s) 671
MvaI CCWGG 1 cut(s) 386
NdeII GATC 3 cut(s) 157, 196, 268
NlaIII CATG 2 cut(s) 65, 351
NlaIV GGNNCC 1 cut(s) 187
NmeAIII GCCGAG 1 cut(s) 178
NsiI ATGCAT 1 cut(s) 349
NspI RCATGY 1 cut(s) 351
OliI CACNNNNGTG 1 cut(s) 673
PaeI GCATGC 1 cut(s) 351
PfeI GAWTC 1 cut(s) 576
PkrI GCNGC 1 cut(s) 486
Ple19I CGATCG 1 cut(s) 271
PleI GAGTC 2 cut(s) 33, 223
PpsI GAGTC 2 cut(s) 33, 223
Ppu21I YACGTR 1 cut(s) 69
Psp6I CCWGG 1 cut(s) 384
PspGI CCWGG 1 cut(s) 384
PspN4I GGNNCC 1 cut(s) 187
PspPI GGNCC 1 cut(s) 185
PstI CTGCAG 1 cut(s) 596
PvuI CGATCG 1 cut(s) 271
RsaI GTAC 3 cut(s) 67, 71, 316
RsaNI GTAC 3 cut(s) 66, 70, 315
RseI CAYNNNNRTG 2 cut(s) 513, 673
SaqAI TTAA 3 cut(s) 17, 525, 620
SatI GCNGC 1 cut(s) 485
Sau3AI GATC 3 cut(s) 157, 196, 268
Sau96I GGNCC 1 cut(s) 185
SchI GAGTC 2 cut(s) 34, 223
ScrFI CCNGG 1 cut(s) 386
SetI ASST 7 cut(s) 71, 106, 130, 172, 307, 387, 470
SexAI ACCWGGT 1 cut(s) 384
SfaNI GCATC 3 cut(s) 235, 334, 673
SfcI CTRYAG 1 cut(s) 592
SinI GGWCC 1 cut(s) 185
SmiMI CAYNNNNRTG 2 cut(s) 513, 673
SnaBI TACGTA 1 cut(s) 69
SphI GCATGC 1 cut(s) 351
Sse9I AATT 9 cut(s) 282, 308, 400, 408, 437, 477, 625, 656, 671
SsiI CCGC 1 cut(s) 484
StyD4I CCNGG 1 cut(s) 384
TaaI ACNGT 1 cut(s) 541
TaiI ACGT 2 cut(s) 71, 106
TaqI TCGA 3 cut(s) 217, 243, 267
TasI AATT 9 cut(s) 282, 308, 400, 408, 437, 477, 625, 656, 671
TauI GCSGC 1 cut(s) 487
TfiI GAWTC 1 cut(s) 576
Tru1I TTAA 3 cut(s) 17, 525, 620
Tru9I TTAA 3 cut(s) 17, 525, 620
TscAI CASTG 2 cut(s) 546, 613
TspDTI ATGAA 1 cut(s) 225
TspGWI ACGGA 1 cut(s) 332
TspRI CASTG 2 cut(s) 546, 613
VpaK11BI GGWCC 1 cut(s) 185
XapI RAATTY 3 cut(s) 308, 400, 437
XceI RCATGY 1 cut(s) 351
Zsp2I ATGCAT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.