Rroxscaffold_1G00062120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000886
Physical Location & Seq
Forward (+)
84161574 .. 84162596
1023 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00062120.1

Sequence Viewer

Length: 1023 bp
ATGTCGACGGATGGCGTCATTTCGGAGAAGGAGGACAAGCGAAGAAGAAGAAGATGGGAGGAGTTAGACATGGACTGCTTATCGAAGGTGTTTAACAGAGTTGGCATGGAGTCACTGATTTTGGCGGTGCCTTTTGTCTGCAAGTCGTGGTACAAAGCTACCCTCAATCCTTTATCCTGGCAAGAGCTCTCATTTCCAGAGTTAACGCGTTGTCCTTGGAGTTTCGATGATGATGATGATGATGATGAAGCTCGAAGTTTCGGTACATTTTATGATAAGTTTATGGATCATTTTGGAATCAATAGGAGTAGTTTCTCAATCACTGGTTTTGTGAAGTCTGTAGTCGATCGGAGCAAAGGGGGTGCTACCTTGCTCTGGCTGCCTGCATTCTGTACAGAGGAAGCATTGAGATATGTTTCAGATGCGTGTCCTCTCCTCAAGTTTTTGGGTTTTGTGGATGACTTGGTGCTTTTTAAGCATTCGCAAGTTGTTCCCGAAGTGATTGGGAAATGGAAATATTTGGAGGTGTTGCATTTGGGGGGCAGATCGGTGCCTATAATGCAGCAGATGGTGATGGAGCAGAGAAAAGGAAAACGCTTTAGTGAACGTTTCAAGGCGATGTTTGCGTCGGAAAGTCCTGACCTCTATAATGTTTTGGAGAGAATCATTGTGCAAATTGGCGCTCACTGCAAAAGATTTACGACTTTGATTCTTTATGAAGTCGATCTTGGTCAAGTAGAGGCATTGGCAATTGTGAACTTGCTGCCAAACCTTCGGTGCATATGGGCAATAGGGTGTACCATTGAAAGGGATACCGTTGTAACAATAATGCGGGGATGCAAAAATCTTGTGCTTTTTCGTGCCAATCATTGTGGCGGTTTTGAAGATAATGATGGAGAAATATCCGAGCTTGCTTCCAAGACTCGTCATTTTGCATGTGAGGGTTGTTCAGACCTTCCTGCCCGTGCTACAGTATGGAGGAAGTATGTTTTCATCAGGATTGGATGGGATATTGAGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

340

Amino Acids

39.02

Weight (kDa)

5.96

Isoelectric Point (pI)

51.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 127, 550
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 208
AciI CCGC 3 cut(s) 125, 832, 876
AclI AACGTT 1 cut(s) 607
AclWI GGATC 1 cut(s) 294
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 4 cut(s) 152, 265, 394, 799
AfiI CCNNNNNNNGG 2 cut(s) 375, 807
AflIII ACRYGT 1 cut(s) 206
AgsI TTSAA 3 cut(s) 613, 806, 884
AjnI CCWGG 1 cut(s) 176
AjuI GAANNNNNNNTTGG 2 cut(s) 711, 743
AluBI AGCT 4 cut(s) 158, 187, 251, 910
AluI AGCT 4 cut(s) 158, 187, 251, 910
Alw21I GWGCWC 1 cut(s) 189
AlwI GGATC 1 cut(s) 294
ApeKI GCWGC 3 cut(s) 379, 562, 763
AspLEI GCGC 1 cut(s) 683
AsuHPI GGTGA 1 cut(s) 583
BaeI ACNNNNGTAYC 2 cut(s) 804, 837
BanI GGYRCC 2 cut(s) 127, 550
BanII GRGCYC 1 cut(s) 189
BarI GAAGNNNNNNTAC 2 cut(s) 247, 279
Bbv12I GWGCWC 1 cut(s) 189
BbvI GCAGC 3 cut(s) 366, 574, 750
BccI CCATC 6 cut(s) 5, 48, 562, 568, 887, 999
BciT130I CCWGG 1 cut(s) 178
BciVI GTATCC 1 cut(s) 805
BfmI CTRYAG 2 cut(s) 339, 969
BfoI RGCGCY 1 cut(s) 684
BfuI GTATCC 1 cut(s) 805
BisI GCNGC 3 cut(s) 380, 563, 764
BlsI GCNGC 3 cut(s) 381, 564, 765
Bme1390I CCNGG 1 cut(s) 178
BmiI GGNNCC 2 cut(s) 129, 552
BmrFI CCNGG 1 cut(s) 178
BmsI GCATC 2 cut(s) 412, 827
BpuEI CTTGAG 1 cut(s) 422
BsaHI GRCGYC 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 215
Bsc4I CCNNNNNNNGG 2 cut(s) 375, 807
Bse1I ACTGG 1 cut(s) 328
BseBI CCWGG 1 cut(s) 178
BseDI CCNNGG 1 cut(s) 215
BseGI GGATG 4 cut(s) 16, 463, 842, 1010
BseLI CCNNNNNNNGG 2 cut(s) 375, 807
BseNI ACTGG 1 cut(s) 328
BseRI GAGGAG 2 cut(s) 74, 425
BseXI GCAGC 3 cut(s) 366, 574, 750
Bsh1236I CGCG 1 cut(s) 208
Bsh1285I CGRYCG 1 cut(s) 349
BshNI GGYRCC 2 cut(s) 127, 550
BsiEI CGRYCG 1 cut(s) 349
BsiHKAI GWGCWC 1 cut(s) 189
BslI CCNNNNNNNGG 2 cut(s) 375, 807
BsmI GAATGC 2 cut(s) 386, 478
Bsp1286I GDGCHC 1 cut(s) 189
Bsp1407I TGTACA 1 cut(s) 392
Bsp143I GATC 4 cut(s) 286, 346, 545, 724
BspACI CCGC 3 cut(s) 125, 832, 876
BspFNI CGCG 1 cut(s) 208
BspLI GGNNCC 2 cut(s) 129, 552
BspPI GGATC 1 cut(s) 294
BspT107I GGYRCC 2 cut(s) 127, 550
BsrGI TGTACA 1 cut(s) 392
BsrI ACTGG 1 cut(s) 328
BssECI CCNNGG 1 cut(s) 215
BssMI GATC 4 cut(s) 286, 346, 545, 724
BssNI GRCGYC 1 cut(s) 15
BssT1I CCWWGG 1 cut(s) 215
Bst2UI CCWGG 1 cut(s) 178
Bst4CI ACNGT 2 cut(s) 817, 973
BstACI GRCGYC 1 cut(s) 15
BstAUI TGTACA 1 cut(s) 392
BstC8I GCNNGC 2 cut(s) 384, 912
BstF5I GGATG 4 cut(s) 16, 463, 842, 1010
BstFNI CGCG 1 cut(s) 208
BstH2I RGCGCY 1 cut(s) 684
BstHHI GCGC 1 cut(s) 683
BstKTI GATC 4 cut(s) 289, 349, 548, 727
BstMBI GATC 4 cut(s) 286, 346, 545, 724
BstMCI CGRYCG 1 cut(s) 349
BstMWI GCNNNNNNNGC 5 cut(s) 379, 475, 559, 623, 687
BstNI CCWGG 1 cut(s) 178
BstNSI RCATGY 1 cut(s) 939
BstSCI CCNGG 1 cut(s) 176
BstSFI CTRYAG 2 cut(s) 339, 969
BstUI CGCG 1 cut(s) 208
BstV1I GCAGC 3 cut(s) 366, 574, 750
BsuI GTATCC 1 cut(s) 805
BtgZI GCGATG 1 cut(s) 632
BtsCI GGATG 4 cut(s) 16, 463, 842, 1010
BtsI GCAGTG 1 cut(s) 685
BtsIMutI CAGTG 3 cut(s) 113, 321, 685
Cac8I GCNNGC 2 cut(s) 384, 912
CfoI GCGC 1 cut(s) 683
CseI GACGC 2 cut(s) 4, 615
Csp6I GTAC 4 cut(s) 151, 264, 393, 798
CspCI CAANNNNNGTGG 2 cut(s) 853, 888
CviAII CATG 3 cut(s) 70, 106, 936
CviJI RGCY 5 cut(s) 158, 187, 251, 379, 910
CviKI_1 RGCY 5 cut(s) 158, 187, 251, 379, 910
CviQI GTAC 4 cut(s) 151, 264, 393, 798
DpnI GATC 4 cut(s) 288, 348, 547, 726
DpnII GATC 4 cut(s) 286, 346, 545, 724
Ecl136II GAGCTC 1 cut(s) 187
Eco130I CCWWGG 1 cut(s) 215
Eco24I GRGCYC 1 cut(s) 189
Eco53kI GAGCTC 1 cut(s) 187
EcoICRI GAGCTC 1 cut(s) 187
EcoRII CCWGG 1 cut(s) 176
EcoT14I CCWWGG 1 cut(s) 215
EcoT38I GRGCYC 1 cut(s) 189
ErhI CCWWGG 1 cut(s) 215
FaeI CATG 3 cut(s) 73, 109, 939
FalI AAGNNNNNCTT 2 cut(s) 711, 743
FatI CATG 3 cut(s) 69, 105, 935
FauI CCCGC 1 cut(s) 825
FauNDI CATATG 1 cut(s) 782
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 3 cut(s) 380, 563, 764
FokI GGATG 4 cut(s) 23, 470, 849, 1017
FriOI GRGCYC 1 cut(s) 189
Fsp4HI GCNGC 3 cut(s) 380, 563, 764
GlaI GCGC 1 cut(s) 682
GluI GCNGC 3 cut(s) 380, 563, 764
HaeII RGCGCY 1 cut(s) 684
HgaI GACGC 2 cut(s) 4, 615
HhaI GCGC 1 cut(s) 683
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 3 cut(s) 73, 109, 939
Hin6I GCGC 1 cut(s) 681
HinP1I GCGC 1 cut(s) 681
HincII GTYRAC 2 cut(s) 6, 204
HindII GTYRAC 2 cut(s) 6, 204
HinfI GANTC 5 cut(s) 110, 297, 663, 709, 922
HpaI GTTAAC 1 cut(s) 204
HphI GGTGA 1 cut(s) 583
Hpy166II GTNNAC 5 cut(s) 6, 204, 605, 757, 798
Hpy188I TCNGA 6 cut(s) 25, 351, 421, 631, 907, 952
Hpy188III TCNNGA 4 cut(s) 197, 494, 638, 997
Hpy8I GTNNAC 5 cut(s) 6, 204, 605, 757, 798
Hpy99I CGWCG 2 cut(s) 10, 631
HpyAV CCTTC 4 cut(s) 22, 79, 782, 965
HpyCH4III ACNGT 2 cut(s) 817, 973
HpyCH4IV ACGT 1 cut(s) 607
HpyCH4V TGCA 9 cut(s) 141, 386, 532, 562, 673, 690, 780, 840, 935
HpyF10VI GCNNNNNNNGC 5 cut(s) 379, 475, 559, 623, 687
HpySE526I ACGT 1 cut(s) 607
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 3 cut(s) 73, 109, 939
HspAI GCGC 1 cut(s) 681
KspAI GTTAAC 1 cut(s) 204
Kzo9I GATC 4 cut(s) 286, 346, 545, 724
LmnI GCTCC 2 cut(s) 351, 577
LpnPI CCDG 9 cut(s) 163, 190, 210, 309, 361, 396, 651, 972, 982
Lsp1109I GCAGC 3 cut(s) 366, 574, 750
LweI GCATC 2 cut(s) 412, 827
MaeII ACGT 1 cut(s) 607
MaeIII GTNAC 2 cut(s) 111, 820
MalI GATC 4 cut(s) 288, 348, 547, 726
MboI GATC 4 cut(s) 286, 346, 545, 724
MboII GAAGA 5 cut(s) 54, 57, 60, 63, 896
MfeI CAATTG 1 cut(s) 750
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 2 cut(s) 675, 750
MluI ACGCGT 1 cut(s) 206
MlyI GAGTC 2 cut(s) 119, 916
MmeI TCCRAC 1 cut(s) 609
MseI TTAA 3 cut(s) 93, 203, 474
MspR9I CCNGG 1 cut(s) 178
MunI CAATTG 1 cut(s) 750
Mva1269I GAATGC 2 cut(s) 386, 478
MvaI CCWGG 1 cut(s) 178
MvnI CGCG 1 cut(s) 208
MwoI GCNNNNNNNGC 5 cut(s) 379, 475, 559, 623, 687
NdeI CATATG 1 cut(s) 782
NdeII GATC 4 cut(s) 286, 346, 545, 724
NlaIII CATG 3 cut(s) 73, 109, 939
NlaIV GGNNCC 2 cut(s) 129, 552
NmuCI GTSAC 1 cut(s) 111
NspI RCATGY 1 cut(s) 939
PctI GAATGC 2 cut(s) 386, 478
PfeI GAWTC 3 cut(s) 297, 663, 709
PkrI GCNGC 3 cut(s) 381, 564, 765
Ple19I CGATCG 1 cut(s) 349
PleI GAGTC 2 cut(s) 118, 916
PpsI GAGTC 2 cut(s) 118, 916
Psp124BI GAGCTC 1 cut(s) 189
Psp1406I AACGTT 1 cut(s) 607
Psp6I CCWGG 1 cut(s) 176
PspGI CCWGG 1 cut(s) 176
PspN4I GGNNCC 2 cut(s) 129, 552
PvuI CGATCG 1 cut(s) 349
RsaI GTAC 4 cut(s) 152, 265, 394, 799
RsaNI GTAC 4 cut(s) 151, 264, 393, 798
SacI GAGCTC 1 cut(s) 189
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 3 cut(s) 93, 203, 474
SatI GCNGC 3 cut(s) 380, 563, 764
Sau3AI GATC 4 cut(s) 286, 346, 545, 724
SchI GAGTC 2 cut(s) 119, 916
ScrFI CCNGG 1 cut(s) 178
SduI GDGCHC 1 cut(s) 189
SfaNI GCATC 2 cut(s) 412, 827
SfcI CTRYAG 2 cut(s) 339, 969
SmlI CTYRAG 1 cut(s) 437
SmoI CTYRAG 1 cut(s) 437
Sse9I AATT 2 cut(s) 675, 750
SsiI CCGC 3 cut(s) 125, 832, 876
SspI AATATT 1 cut(s) 518
SstI GAGCTC 1 cut(s) 189
StyD4I CCNGG 1 cut(s) 176
StyI CCWWGG 1 cut(s) 215
TaaI ACNGT 2 cut(s) 817, 973
TaiI ACGT 1 cut(s) 610
TaqI TCGA 6 cut(s) 5, 83, 225, 253, 345, 723
TasI AATT 2 cut(s) 675, 750
TatI WGTACW 1 cut(s) 392
TfiI GAWTC 3 cut(s) 297, 663, 709
Tru1I TTAA 3 cut(s) 93, 203, 474
Tru9I TTAA 3 cut(s) 93, 203, 474
TscAI CASTG 3 cut(s) 120, 328, 692
TseFI GTSAC 1 cut(s) 111
TseI GCWGC 3 cut(s) 379, 562, 763
Tsp45I GTSAC 1 cut(s) 111
TspDTI ATGAA 3 cut(s) 261, 732, 982
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 3 cut(s) 120, 328, 692
XceI RCATGY 1 cut(s) 939
XmiI GTMKAC 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.