FvH4_3g05260

Leucine-rich repeats, typical (most populated) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000886
Physical Location & Seq
Forward (+)
3048883 .. 3049896
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g05260.t1

Sequence Viewer

Length: 936 bp
ATGTCGACAGACGGGGACGGCATCATTTTGGAGCAGGAGCAGGAGAAAAGAAGATGGGAGGAGATGAACGAGGATTGCTTAGCAAATGCGTTTAGCAGAACTGGAATGAAGTCGCTGCTTTTGGCGATCCCTTTTGTCTGTAAGTCCTGTACTGTTGAGGAAATTGAAATGGGTCCTCAGAGTTTCGGTACATTTTATGAGAAATTTATAGATGAATATGGAATTGATAAGAGTCGGTTTTCGATTACTGGGTTTGTGAAGTTGGTGGTTGGTCGGAGCAAAGGGAAGGCTACTGAACTGGAGCTACCCATGTATGGTACAAAAGCAGCTCTGAGATATGTTGCAAATGTGTGTCCTCTGCTCAGACACTTATCGTTTCAGGATGATCTGGTGATTTTCAAGCATTCTCGAATTCTTCCGCAAGTGATTGGAAAGTGGAAGTTTTTGGAGAGCTTGTCTTTGCGGCCCCGCTTGGTGGTCAATGACGAGCAAAAAAGAGATGGAAACTGCTGGACTAGATATTTCCAGGAGTTGTTGGCACCGGATATTCTGAGCCGCAATAATGTTTTGGAGAGAATTATAGCGCAGATAGGCACTCACTGCAAGCATTTTAGGCAGCTGAATCTTATACAAACCCATCTTCATCAAGATGGGGCATTGGCAATTGCGAACTTTCTGCCACACCTTCAGATTATAGTGGCGGTCGGGTGCATCATCCAAAGGGATAGCATTTCCACAATAGTTCGGGGATGCAAAGAGCTTCGGGTTTTTTATGCCAAGGAATCTACAGGCTTTGACGAGGATGGTCGCCAGACTGGTAAGGTTGTACTTGAGGACTGTGTACCCCTAGATAGACGTCTGTTTATGAGGGATTTGAGCAGTGCTACTTTGATGCGGAATTTTGTATACTACAGGTTGAGAATGTCGGGTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 ubiquitin

Protein Analysis

312

Amino Acids

35.72

Weight (kDa)

8.52

Isoelectric Point (pI)

50.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 859
AccB1I GGYRCC 1 cut(s) 538
AccI GTMKAC 2 cut(s) 5, 906
AciI CCGC 6 cut(s) 419, 463, 469, 556, 701, 895
AclWI GGATC 1 cut(s) 121
AcsI RAATTY 3 cut(s) 203, 411, 898
AcuI CTGAAG 1 cut(s) 671
AcyI GRCGYC 1 cut(s) 856
AfaI GTAC 5 cut(s) 151, 190, 319, 828, 843
AfiI CCNNNNNNNGG 2 cut(s) 314, 475
AgsI TTSAA 2 cut(s) 167, 400
AjnI CCWGG 1 cut(s) 525
AluBI AGCT 5 cut(s) 304, 329, 453, 619, 760
AluI AGCT 5 cut(s) 304, 329, 453, 619, 760
AlwI GGATC 1 cut(s) 121
AoxI GGCC 1 cut(s) 464
ApeKI GCWGC 3 cut(s) 115, 326, 616
ApoI RAATTY 3 cut(s) 203, 411, 898
AspLEI GCGC 1 cut(s) 586
AspS9I GGNCC 2 cut(s) 173, 465
AsuHPI GGTGA 1 cut(s) 403
AvaII GGWCC 1 cut(s) 173
BanI GGYRCC 1 cut(s) 538
BbvI GCAGC 3 cut(s) 102, 338, 628
BccI CCATC 5 cut(s) 48, 494, 644, 645, 797
BceAI ACGGC 1 cut(s) 34
BcgI CGANNNNNNTGC 2 cut(s) 658, 692
BciT130I CCWGG 1 cut(s) 527
BfaI CTAG 2 cut(s) 516, 848
BfmI CTRYAG 2 cut(s) 786, 910
BisI GCNGC 5 cut(s) 116, 327, 464, 556, 617
BlpI GCTNAGC 1 cut(s) 79
BlsI GCNGC 5 cut(s) 117, 328, 465, 557, 618
Bme1390I CCNGG 1 cut(s) 527
Bme18I GGWCC 1 cut(s) 173
BmgT120I GGNCC 2 cut(s) 173, 465
BmiI GGNNCC 3 cut(s) 174, 467, 540
BmrFI CCNGG 1 cut(s) 527
BmrI ACTGGG 1 cut(s) 258
BmsI GCATC 4 cut(s) 30, 720, 740, 882
BmuI ACTGGG 1 cut(s) 258
BpmI CTGGAG 1 cut(s) 320
Bpu1102I GCTNAGC 1 cut(s) 79
BpuEI CTTGAG 1 cut(s) 851
BsaHI GRCGYC 1 cut(s) 856
BsaJI CCNNGG 1 cut(s) 777
BsaWI WCCGGW 1 cut(s) 541
BsaXI ACNNNNNCTCC 2 cut(s) 440, 470
Bsc4I CCNNNNNNNGG 2 cut(s) 314, 475
Bse1I ACTGG 4 cut(s) 106, 253, 303, 820
BseBI CCWGG 1 cut(s) 527
BseDI CCNNGG 1 cut(s) 777
BseGI GGATG 4 cut(s) 388, 714, 755, 808
BseLI CCNNNNNNNGG 2 cut(s) 314, 475
BseMII CTCAG 4 cut(s) 191, 323, 376, 542
BseNI ACTGG 4 cut(s) 106, 253, 303, 820
BseRI GAGGAG 1 cut(s) 74
BseXI GCAGC 3 cut(s) 102, 338, 628
Bsh1285I CGRYCG 1 cut(s) 705
BshFI GGCC 1 cut(s) 466
BshNI GGYRCC 1 cut(s) 538
BsiEI CGRYCG 1 cut(s) 705
BsiSI CCGG 1 cut(s) 542
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 2 cut(s) 314, 475
BsmFI GGGAC 1 cut(s) 29
BsmI GAATGC 1 cut(s) 403
BsnI GGCC 1 cut(s) 466
Bsp143I GATC 2 cut(s) 126, 385
Bsp1720I GCTNAGC 1 cut(s) 79
BspACI CCGC 6 cut(s) 419, 463, 469, 556, 701, 895
BspANI GGCC 1 cut(s) 466
BspCNI CTCAG 4 cut(s) 190, 324, 375, 543
BspLI GGNNCC 3 cut(s) 174, 467, 540
BspPI GGATC 1 cut(s) 121
BspT107I GGYRCC 1 cut(s) 538
BsrI ACTGG 4 cut(s) 106, 253, 303, 820
BssECI CCNNGG 1 cut(s) 777
BssMI GATC 2 cut(s) 126, 385
BssNAI GTATAC 1 cut(s) 907
BssNI GRCGYC 1 cut(s) 856
BssT1I CCWWGG 1 cut(s) 777
Bst1107I GTATAC 1 cut(s) 907
Bst2UI CCWGG 1 cut(s) 527
Bst4CI ACNGT 2 cut(s) 154, 839
BstACI GRCGYC 1 cut(s) 856
BstAPI GCANNNNNTGC 1 cut(s) 600
BstC8I GCNNGC 1 cut(s) 605
BstDEI CTNAG 5 cut(s) 79, 177, 332, 362, 551
BstF5I GGATG 4 cut(s) 388, 714, 755, 808
BstHHI GCGC 1 cut(s) 586
BstKTI GATC 2 cut(s) 129, 388
BstMBI GATC 2 cut(s) 126, 385
BstMCI CGRYCG 1 cut(s) 705
BstMWI GCNNNNNNNGC 2 cut(s) 600, 613
BstNI CCWGG 1 cut(s) 527
BstSCI CCNGG 1 cut(s) 525
BstSFI CTRYAG 2 cut(s) 786, 910
BstV1I GCAGC 3 cut(s) 102, 338, 628
BstZ17I GTATAC 1 cut(s) 907
BsuRI GGCC 1 cut(s) 466
BtsCI GGATG 4 cut(s) 388, 714, 755, 808
BtsI GCAGTG 2 cut(s) 598, 886
BtsIMutI CAGTG 2 cut(s) 598, 886
Cac8I GCNNGC 1 cut(s) 605
CfoI GCGC 1 cut(s) 586
Cfr13I GGNCC 2 cut(s) 173, 465
Csp6I GTAC 5 cut(s) 150, 189, 318, 827, 842
CviAII CATG 1 cut(s) 310
CviJI RGCY 9 cut(s) 290, 304, 329, 453, 466, 555, 619, 760, 792
CviKI_1 RGCY 9 cut(s) 290, 304, 329, 453, 466, 555, 619, 760, 792
CviQI GTAC 5 cut(s) 150, 189, 318, 827, 842
DdeI CTNAG 5 cut(s) 79, 177, 332, 362, 551
DpnI GATC 2 cut(s) 128, 387
DpnII GATC 2 cut(s) 126, 385
Eco130I CCWWGG 1 cut(s) 777
Eco47I GGWCC 1 cut(s) 173
Eco57I CTGAAG 1 cut(s) 671
EcoO109I RGGNCCY 1 cut(s) 173
EcoRI GAATTC 1 cut(s) 411
EcoRII CCWGG 1 cut(s) 525
EcoT14I CCWWGG 1 cut(s) 777
ErhI CCWWGG 1 cut(s) 777
FaeI CATG 1 cut(s) 313
FaqI GGGAC 1 cut(s) 29
FatI CATG 1 cut(s) 309
FauI CCCGC 1 cut(s) 476
FblI GTMKAC 2 cut(s) 5, 906
Fnu4HI GCNGC 5 cut(s) 116, 327, 464, 556, 617
FokI GGATG 4 cut(s) 395, 701, 762, 815
Fsp4HI GCNGC 5 cut(s) 116, 327, 464, 556, 617
FspBI CTAG 2 cut(s) 516, 848
GlaI GCGC 1 cut(s) 585
GluI GCNGC 5 cut(s) 116, 327, 464, 556, 617
GsuI CTGGAG 1 cut(s) 320
HaeIII GGCC 1 cut(s) 466
HapII CCGG 1 cut(s) 542
HhaI GCGC 1 cut(s) 586
Hin1I GRCGYC 1 cut(s) 856
Hin1II CATG 1 cut(s) 313
Hin6I GCGC 1 cut(s) 584
HinP1I GCGC 1 cut(s) 584
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 3 cut(s) 232, 622, 782
HpaII CCGG 1 cut(s) 542
HphI GGTGA 1 cut(s) 403
Hpy166II GTNNAC 3 cut(s) 6, 842, 907
Hpy188I TCNGA 6 cut(s) 180, 276, 333, 365, 552, 690
Hpy188III TCNNGA 3 cut(s) 380, 408, 647
Hpy8I GTNNAC 3 cut(s) 6, 842, 907
HpyAV CCTTC 2 cut(s) 280, 695
HpyCH4III ACNGT 2 cut(s) 154, 839
HpyCH4IV ACGT 1 cut(s) 856
HpyCH4V TGCA 4 cut(s) 344, 603, 711, 753
HpyF10VI GCNNNNNNNGC 2 cut(s) 600, 613
HpyF3I CTNAG 5 cut(s) 79, 177, 332, 362, 551
HpySE526I ACGT 1 cut(s) 856
Hsp92I GRCGYC 1 cut(s) 856
Hsp92II CATG 1 cut(s) 313
HspAI GCGC 1 cut(s) 584
Kzo9I GATC 2 cut(s) 126, 385
LmnI GCTCC 4 cut(s) 31, 37, 276, 301
Lsp1109I GCAGC 3 cut(s) 102, 338, 628
LweI GCATC 4 cut(s) 30, 720, 740, 882
MaeI CTAG 2 cut(s) 516, 848
MaeII ACGT 1 cut(s) 856
MalI GATC 2 cut(s) 128, 387
MboI GATC 2 cut(s) 126, 385
MboII GAAGA 3 cut(s) 63, 407, 632
MfeI CAATTG 1 cut(s) 663
MluCI AATT 7 cut(s) 162, 203, 222, 411, 576, 663, 898
MlyI GAGTC 1 cut(s) 241
MmeI TCCRAC 1 cut(s) 254
MnlI CCTC 8 cut(s) 52, 64, 151, 186, 366, 793, 826, 861
MslI CAYNNNNRTG 1 cut(s) 648
MspA1I CMGCKG 1 cut(s) 619
MspI CCGG 1 cut(s) 542
MspR9I CCNGG 1 cut(s) 527
MunI CAATTG 1 cut(s) 663
Mva1269I GAATGC 1 cut(s) 403
MvaI CCWGG 1 cut(s) 527
MwoI GCNNNNNNNGC 2 cut(s) 600, 613
NdeII GATC 2 cut(s) 126, 385
NlaIII CATG 1 cut(s) 313
NlaIV GGNNCC 3 cut(s) 174, 467, 540
PctI GAATGC 1 cut(s) 403
PfeI GAWTC 2 cut(s) 622, 782
PfoI TCCNGGA 1 cut(s) 525
PkrI GCNGC 5 cut(s) 117, 328, 465, 557, 618
PleI GAGTC 1 cut(s) 240
PpsI GAGTC 1 cut(s) 240
PpuMI RGGWCCY 1 cut(s) 173
Psp5II RGGWCCY 1 cut(s) 173
Psp6I CCWGG 1 cut(s) 525
PspGI CCWGG 1 cut(s) 525
PspN4I GGNNCC 3 cut(s) 174, 467, 540
PspPI GGNCC 2 cut(s) 173, 465
PspPPI RGGWCCY 1 cut(s) 173
PsrI GAACNNNNNNTAC 2 cut(s) 288, 320
PvuII CAGCTG 1 cut(s) 619
RsaI GTAC 5 cut(s) 151, 190, 319, 828, 843
RsaNI GTAC 5 cut(s) 150, 189, 318, 827, 842
RseI CAYNNNNRTG 1 cut(s) 648
SalI GTCGAC 1 cut(s) 4
SatI GCNGC 5 cut(s) 116, 327, 464, 556, 617
Sau3AI GATC 2 cut(s) 126, 385
Sau96I GGNCC 2 cut(s) 173, 465
SchI GAGTC 1 cut(s) 241
ScrFI CCNGG 1 cut(s) 527
SetI ASST 9 cut(s) 306, 331, 455, 621, 687, 762, 825, 859, 917
SfaNI GCATC 4 cut(s) 30, 720, 740, 882
SfcI CTRYAG 2 cut(s) 786, 910
SinI GGWCC 1 cut(s) 173
SmiMI CAYNNNNRTG 1 cut(s) 648
SmlI CTYRAG 1 cut(s) 830
SmoI CTYRAG 1 cut(s) 830
Sse9I AATT 7 cut(s) 162, 203, 222, 411, 576, 663, 898
SsiI CCGC 6 cut(s) 419, 463, 469, 556, 701, 895
SspMI CTAG 2 cut(s) 516, 848
StyD4I CCNGG 1 cut(s) 525
StyI CCWWGG 1 cut(s) 777
TaaI ACNGT 2 cut(s) 154, 839
TaiI ACGT 1 cut(s) 859
TaqI TCGA 3 cut(s) 5, 242, 409
TasI AATT 7 cut(s) 162, 203, 222, 411, 576, 663, 898
TatI WGTACW 2 cut(s) 149, 826
TauI GCSGC 2 cut(s) 466, 558
TfiI GAWTC 2 cut(s) 622, 782
TscAI CASTG 2 cut(s) 605, 886
TseI GCWGC 3 cut(s) 115, 326, 616
TspDTI ATGAA 4 cut(s) 80, 122, 228, 632
TspRI CASTG 2 cut(s) 605, 886
VpaK11BI GGWCC 1 cut(s) 173
XapI RAATTY 3 cut(s) 203, 411, 898
XmiI GTMKAC 2 cut(s) 5, 906
XspI CTAG 2 cut(s) 516, 848
ZraI GACGTC 1 cut(s) 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.