Rh3DG232900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000886
Physical Location & Seq
Reverse (-)
22143263 .. 22144276
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG232900.1

Sequence Viewer

Length: 1014 bp
ATGGAAGATGAGGGAATCAGAATCACAAGATGGAAGGATTTAGAGACGGACTGTTTGACTCGTGTGCTTTCCAGAGTTGGAATGGAGTCTTTGCTCCTGACAGTTCCTTTCGTCTGCAAGTCATGGTACGTTACAAGTCTCAATCCCTTGTGCTTTCAAAGCCTCATATTTCCGGACTTTATGCCTTTTCCTCTGTTCACGTATTCTAATAATAGTAAGGAACCTCCTCGGAGTTTTGGTCCCTTTTATGATAAGTTTATAGACGAGTATGGCATTGATAAGACTCGTTTCTCGATCACTGCATTTGTGAAGTTTGTAGTCAATCGCAGCAATGGATTAGCTATTCAACTTAAGCTACCAGAATTCTGTACCAAAGAAGGATTGATGTTTGTTTCGGACGCATGCCCTCTTCTTAAGAATGTATGGTTACCAGATGATTTGGTGATTTTCAAGACTTCTCACATTGTTTCACAGTTGATTAGGAAGTGGAAATTTTTGGAGAGCTTGATTTTGGGGTTTGGGATGTTGAACATCATGGACCAGTATGAAATGGATGGTAGGCCTAAGTTTTTGAGTGAACATTTCAATAAGTTATTGACAATGAAAGGTTTCTTCTCCCCTAATGCTTTGGATGCAATTTTAGTCCAGATTGGCACACATTGCAAGCATTTTACGGATTTAATGGTTTATCATACTAGCCTTGGTGAAGTTGAGGCCTCAAGGATTGTGAAGTCACTGCCAAAACTTAAGAAGTTGGTCTTGAGTAATTGTCACATTAATCGGGACAGTGTTGTTACTGTACTGAGGGGGTGCAAAGAGCTTGTACTTTTTATTGCCGATCAATGTGAAGGCTTTGAAGGGAGTGATGAAGAAATATCAAAATTTGGTTCTCAGATTATGAACTTTTCGTGCCAGGATTGCGTAGGCGGTGATTTGTTATCGACTTTTTTCAAACTTATTAATGTACATAGGAGGTTAGTTTCCATAATGTTCTTAATGTACATGGGAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

337

Amino Acids

38.63

Weight (kDa)

7.02

Isoelectric Point (pI)

39.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 172
AciI CCGC 1 cut(s) 927
AcsI RAATTY 3 cut(s) 362, 491, 881
AfaI GTAC 6 cut(s) 128, 370, 801, 825, 966, 1001
AflII CTTAAG 3 cut(s) 350, 413, 746
AgsI TTSAA 7 cut(s) 158, 347, 451, 529, 586, 857, 952
AjnI CCWGG 1 cut(s) 912
AluBI AGCT 4 cut(s) 341, 355, 504, 820
AluI AGCT 4 cut(s) 341, 355, 504, 820
Alw26I GTCTC 2 cut(s) 38, 143
Aor13HI TCCGGA 1 cut(s) 172
AoxI GGCC 2 cut(s) 560, 714
ApeKI GCWGC 1 cut(s) 327
ApoI RAATTY 3 cut(s) 362, 491, 881
ArsI GACNNNNNNTTYG 2 cut(s) 37, 69
AseI ATTAAT 2 cut(s) 777, 960
Asp700I GAANNNNTTC 1 cut(s) 608
AspS9I GGNCC 2 cut(s) 239, 538
AsuHPI GGTGA 3 cut(s) 454, 716, 941
AvaII GGWCC 2 cut(s) 239, 538
BauI CACGAG 1 cut(s) 60
BbvI GCAGC 1 cut(s) 339
BccI CCATC 2 cut(s) 24, 548
BciT130I CCWGG 1 cut(s) 914
BcoDI GTCTC 2 cut(s) 38, 143
BfaI CTAG 1 cut(s) 696
BfrI CTTAAG 3 cut(s) 350, 413, 746
BisI GCNGC 1 cut(s) 328
BlsI GCNGC 1 cut(s) 329
Bme1390I CCNGG 1 cut(s) 914
Bme18I GGWCC 2 cut(s) 239, 538
BmgT120I GGNCC 2 cut(s) 239, 538
BmiI GGNNCC 2 cut(s) 222, 241
BmrFI CCNGG 1 cut(s) 914
BmsI GCATC 1 cut(s) 622
BpuEI CTTGAG 2 cut(s) 703, 781
BsaAI YACGTR 1 cut(s) 201
BsaJI CCNNGG 2 cut(s) 227, 700
BsaWI WCCGGW 1 cut(s) 172
BsaXI ACNNNNNCTCC 2 cut(s) 223, 253
Bse1I ACTGG 1 cut(s) 541
Bse3DI GCAATG 2 cut(s) 337, 658
BseAI TCCGGA 1 cut(s) 172
BseBI CCWGG 1 cut(s) 914
BseDI CCNNGG 2 cut(s) 227, 700
BseGI GGATG 3 cut(s) 528, 559, 637
BseMI GCAATG 2 cut(s) 337, 658
BseMII CTCAG 2 cut(s) 794, 905
BseNI ACTGG 1 cut(s) 541
BseRI GAGGAG 1 cut(s) 216
BseXI GCAGC 1 cut(s) 339
BshFI GGCC 2 cut(s) 562, 716
BsiSI CCGG 1 cut(s) 173
BslFI GGGAC 2 cut(s) 225, 797
BsmAI GTCTC 2 cut(s) 38, 143
BsmBI CGTCTC 1 cut(s) 38
BsmFI GGGAC 2 cut(s) 225, 797
BsnI GGCC 2 cut(s) 562, 716
Bsp13I TCCGGA 1 cut(s) 172
Bsp1407I TGTACA 2 cut(s) 964, 999
Bsp143I GATC 2 cut(s) 294, 838
BspACI CCGC 1 cut(s) 927
BspANI GGCC 2 cut(s) 562, 716
BspCNI CTCAG 2 cut(s) 795, 904
BspEI TCCGGA 1 cut(s) 172
BspLI GGNNCC 2 cut(s) 222, 241
BspTI CTTAAG 3 cut(s) 350, 413, 746
BsrDI GCAATG 2 cut(s) 337, 658
BsrGI TGTACA 2 cut(s) 964, 999
BsrI ACTGG 1 cut(s) 541
BssECI CCNNGG 2 cut(s) 227, 700
BssMI GATC 2 cut(s) 294, 838
BssSI CACGAG 1 cut(s) 60
BssT1I CCWWGG 1 cut(s) 700
Bst2BI CACGAG 1 cut(s) 60
Bst2UI CCWGG 1 cut(s) 914
Bst4CI ACNGT 5 cut(s) 53, 103, 474, 788, 799
Bst6I CTCTTC 1 cut(s) 414
BstAFI CTTAAG 3 cut(s) 350, 413, 746
BstAPI GCANNNNNTGC 1 cut(s) 660
BstAUI TGTACA 2 cut(s) 964, 999
BstBAI YACGTR 1 cut(s) 201
BstC8I GCNNGC 2 cut(s) 403, 665
BstDEI CTNAG 3 cut(s) 564, 803, 891
BstEII GGTNACC 1 cut(s) 426
BstF5I GGATG 3 cut(s) 528, 559, 637
BstKTI GATC 2 cut(s) 297, 841
BstMAI GTCTC 2 cut(s) 38, 143
BstMBI GATC 2 cut(s) 294, 838
BstMWI GCNNNNNNNGC 4 cut(s) 159, 632, 660, 918
BstNI CCWGG 1 cut(s) 914
BstNSI RCATGY 1 cut(s) 405
BstPI GGTNACC 1 cut(s) 426
BstSCI CCNGG 1 cut(s) 912
BstV1I GCAGC 1 cut(s) 339
BsuRI GGCC 2 cut(s) 562, 716
BtsCI GGATG 3 cut(s) 528, 559, 637
BtsI GCAGTG 2 cut(s) 297, 734
BtsIMutI CAGTG 3 cut(s) 297, 734, 793
Cac8I GCNNGC 2 cut(s) 403, 665
Cfr13I GGNCC 2 cut(s) 239, 538
CseI GACGC 1 cut(s) 407
Csp6I GTAC 6 cut(s) 127, 369, 800, 824, 965, 1000
CviAII CATG 4 cut(s) 123, 402, 535, 1003
CviJI RGCY 9 cut(s) 162, 341, 355, 504, 562, 699, 716, 820, 852
CviKI_1 RGCY 9 cut(s) 162, 341, 355, 504, 562, 699, 716, 820, 852
CviQI GTAC 6 cut(s) 127, 369, 800, 824, 965, 1000
DdeI CTNAG 3 cut(s) 564, 803, 891
DpnI GATC 2 cut(s) 296, 840
DpnII GATC 2 cut(s) 294, 838
Eam1104I CTCTTC 1 cut(s) 414
EarI CTCTTC 1 cut(s) 414
Eco130I CCWWGG 1 cut(s) 700
Eco147I AGGCCT 2 cut(s) 562, 716
Eco47I GGWCC 2 cut(s) 239, 538
Eco91I GGTNACC 1 cut(s) 426
EcoO65I GGTNACC 1 cut(s) 426
EcoRI GAATTC 1 cut(s) 362
EcoRII CCWGG 1 cut(s) 912
EcoT14I CCWWGG 1 cut(s) 700
ErhI CCWWGG 1 cut(s) 700
Esp3I CGTCTC 1 cut(s) 38
FaeI CATG 4 cut(s) 126, 405, 538, 1006
FalI AAGNNNNNCTT 2 cut(s) 743, 775
FaqI GGGAC 2 cut(s) 225, 797
FatI CATG 4 cut(s) 122, 401, 534, 1002
Fnu4HI GCNGC 1 cut(s) 328
FokI GGATG 3 cut(s) 535, 566, 644
Fsp4HI GCNGC 1 cut(s) 328
FspBI CTAG 1 cut(s) 696
GluI GCNGC 1 cut(s) 328
HaeIII GGCC 2 cut(s) 562, 716
HapII CCGG 1 cut(s) 173
HgaI GACGC 1 cut(s) 407
Hin1II CATG 4 cut(s) 126, 405, 538, 1006
HinfI GANTC 5 cut(s) 15, 21, 58, 86, 283
HpaII CCGG 1 cut(s) 173
HphI GGTGA 3 cut(s) 454, 716, 941
Hpy166II GTNNAC 2 cut(s) 198, 578
Hpy188I TCNGA 4 cut(s) 20, 231, 397, 894
Hpy188III TCNNGA 8 cut(s) 72, 97, 173, 292, 451, 646, 760, 782
Hpy8I GTNNAC 2 cut(s) 198, 578
HpyAV CCTTC 4 cut(s) 28, 371, 842, 851
HpyCH4III ACNGT 5 cut(s) 53, 103, 474, 788, 799
HpyCH4IV ACGT 2 cut(s) 129, 200
HpyCH4V TGCA 5 cut(s) 117, 302, 635, 663, 813
HpyF10VI GCNNNNNNNGC 4 cut(s) 159, 632, 660, 918
HpyF3I CTNAG 3 cut(s) 564, 803, 891
HpySE526I ACGT 2 cut(s) 129, 200
Hsp92II CATG 4 cut(s) 126, 405, 538, 1006
Kpn2I TCCGGA 1 cut(s) 172
Kzo9I GATC 2 cut(s) 294, 838
LmnI GCTCC 1 cut(s) 99
LpnPI CCDG 9 cut(s) 85, 110, 186, 372, 444, 554, 659, 899, 926
Lsp1109I GCAGC 1 cut(s) 339
LweI GCATC 1 cut(s) 622
MaeI CTAG 1 cut(s) 696
MaeII ACGT 2 cut(s) 129, 200
MaeIII GTNAC 5 cut(s) 130, 426, 732, 770, 793
MalI GATC 2 cut(s) 296, 840
MboI GATC 2 cut(s) 294, 838
MboII GAAGA 4 cut(s) 17, 401, 604, 881
MluCI AATT 5 cut(s) 362, 491, 636, 766, 881
MlyI GAGTC 3 cut(s) 52, 95, 277
MmeI TCCRAC 1 cut(s) 58
MroI TCCGGA 1 cut(s) 172
MroXI GAANNNNTTC 1 cut(s) 608
MseI TTAA 7 cut(s) 351, 414, 680, 747, 777, 960, 995
MspCI CTTAAG 3 cut(s) 350, 413, 746
MspI CCGG 1 cut(s) 173
MspR9I CCNGG 1 cut(s) 914
MvaI CCWGG 1 cut(s) 914
MwoI GCNNNNNNNGC 4 cut(s) 159, 632, 660, 918
NdeII GATC 2 cut(s) 294, 838
NlaIII CATG 4 cut(s) 126, 405, 538, 1006
NlaIV GGNNCC 2 cut(s) 222, 241
NmuCI GTSAC 2 cut(s) 732, 770
NspI RCATGY 1 cut(s) 405
PaeI GCATGC 1 cut(s) 405
PceI AGGCCT 2 cut(s) 562, 716
PdmI GAANNNNTTC 1 cut(s) 608
PfeI GAWTC 2 cut(s) 15, 21
PkrI GCNGC 1 cut(s) 329
PleI GAGTC 3 cut(s) 52, 94, 277
PpsI GAGTC 3 cut(s) 52, 94, 277
Ppu21I YACGTR 1 cut(s) 201
PshBI ATTAAT 2 cut(s) 777, 960
Psp6I CCWGG 1 cut(s) 912
PspEI GGTNACC 1 cut(s) 426
PspGI CCWGG 1 cut(s) 912
PspN4I GGNNCC 2 cut(s) 222, 241
PspPI GGNCC 2 cut(s) 239, 538
RsaI GTAC 6 cut(s) 128, 370, 801, 825, 966, 1001
RsaNI GTAC 6 cut(s) 127, 369, 800, 824, 965, 1000
SaqAI TTAA 7 cut(s) 351, 414, 680, 747, 777, 960, 995
SatI GCNGC 1 cut(s) 328
Sau3AI GATC 2 cut(s) 294, 838
Sau96I GGNCC 2 cut(s) 239, 538
SchI GAGTC 3 cut(s) 52, 95, 277
ScrFI CCNGG 1 cut(s) 914
SetI ASST 9 cut(s) 132, 203, 226, 343, 357, 506, 610, 822, 977
SfaNI GCATC 1 cut(s) 622
SinI GGWCC 2 cut(s) 239, 538
SmlI CTYRAG 5 cut(s) 350, 413, 718, 746, 760
SmoI CTYRAG 5 cut(s) 350, 413, 718, 746, 760
SphI GCATGC 1 cut(s) 405
Sse9I AATT 5 cut(s) 362, 491, 636, 766, 881
SseBI AGGCCT 2 cut(s) 562, 716
SsiI CCGC 1 cut(s) 927
SspMI CTAG 1 cut(s) 696
StuI AGGCCT 2 cut(s) 562, 716
StyD4I CCNGG 1 cut(s) 912
StyI CCWWGG 1 cut(s) 700
TaaI ACNGT 5 cut(s) 53, 103, 474, 788, 799
TaiI ACGT 2 cut(s) 132, 203
TaqI TCGA 2 cut(s) 293, 941
TasI AATT 5 cut(s) 362, 491, 636, 766, 881
TatI WGTACW 4 cut(s) 799, 823, 964, 999
TfiI GAWTC 2 cut(s) 15, 21
Tru1I TTAA 7 cut(s) 351, 414, 680, 747, 777, 960, 995
Tru9I TTAA 7 cut(s) 351, 414, 680, 747, 777, 960, 995
TscAI CASTG 3 cut(s) 304, 741, 793
TseFI GTSAC 2 cut(s) 732, 770
TseI GCWGC 1 cut(s) 327
Tsp45I GTSAC 2 cut(s) 732, 770
TspDTI ATGAA 4 cut(s) 561, 617, 882, 914
TspGWI ACGGA 2 cut(s) 62, 689
TspRI CASTG 3 cut(s) 304, 741, 793
Vha464I CTTAAG 3 cut(s) 350, 413, 746
VpaK11BI GGWCC 2 cut(s) 239, 538
VspI ATTAAT 2 cut(s) 777, 960
XapI RAATTY 3 cut(s) 362, 491, 881
XceI RCATGY 1 cut(s) 405
XcmI CCANNNNNNNNNTGG 1 cut(s) 79
XmnI GAANNNNTTC 1 cut(s) 608
XspI CTAG 1 cut(s) 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.