Rh5BG110000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000886
Physical Location & Seq
Reverse (-)
10290739 .. 10292497
1759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG110000.1

Sequence Viewer

Length: 1026 bp
ATGCCGACGGACGGCGTCATTTCGGAGAAGGAGGACAAGCGAAGAAGAAGAAGAAGAAGAAGATGGGAGGAGTTAGACATGGACTGCTTATCGAAGGTGTTTAACAGAGTTGGAATGGAGTCACTGGTTTTGGCGGTGCCTTTTGTCTGCAAGTCGTGGTACAAAGCTAGCCTCAGTCCTTTATCCTGGCAAGAGCTCTCATTTCCAGAGTTAACGCGTTGTCCTTGGAGTTTCGATGATGATGATGATGAAGCTCGGAGTTTCGGTACATTTTATGATGAGTTTATGGATCATTTTGGAATCAATAGGAGTAGTTTCTCAATCACTGGTTTTGTGAAGTCTGTAGTCGACCGGAGCAAGGGGGGTGCTACCCTGCTCTGGCTGCCTGCATTCTGTACAGAGGAAGCATTGAGATATGTTTCAGATGCGTGTCCTCTCCTCAAGTTTTTGGGTTTTGTGGATGACTTGGTGCTTTTTAAGCATTCGCAAGTTGTTCCGGAAGTGATTGGGAAATGGAAATATTTGGAGGTGTTGCATTTGGGGGGCAGCTCGGTGCCTGTAATGCAGCAGATGTTGATGGAGCTGAGAAAAGGAAAACGCTTTAGTGAACGTTTCAAGGCGATGTTTGCGTCGGAAAGTCCTGACCGCTATAATGTTTTGGAGAGAATTGTTGTGCAAATTGGCGCTCACTGCAAAAGATTTACGACTTTGAGTCTTTATCAAGTCGATCTTGGTCAAGTTGAGGCATTGGCAATTGTGAACTTGCTGCCAAACCTTCGGTGCATATCGGCAACAGGGTGTACCATTGAAAGGGATACCGTTGTCACAATAATGCGGGGATGCAAAAATCTTGGGCTTTTTCGTGCCAATCATTGTGGCGGTTTTGAAGATAATGATGGAGAAATATCCAAGCTTGCTTCGAAGACTCGTCATTTTGCATGTGAGGGTTGTTCAGACTTTCCGGCCCGTGCTACTGCATGGAGGAAGTATGTTTTCTTCAGGATTGAATGGGATATTGAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

341

Amino Acids

39.16

Weight (kDa)

6.99

Isoelectric Point (pI)

57.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 136, 553
AccI GTMKAC 1 cut(s) 348
AccII CGCG 1 cut(s) 217
AccIII TCCGGA 1 cut(s) 496
AciI CCGC 4 cut(s) 134, 646, 835, 879
AclI AACGTT 1 cut(s) 610
AclWI GGATC 1 cut(s) 297
AcuI CTGAAG 1 cut(s) 982
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 4 cut(s) 161, 268, 397, 802
AfiI CCNNNNNNNGG 4 cut(s) 11, 358, 378, 810
AflIII ACRYGT 1 cut(s) 215
AgsI TTSAA 4 cut(s) 616, 809, 887, 1007
AhdI GACNNNNNGTC 1 cut(s) 711
AjnI CCWGG 1 cut(s) 185
AluBI AGCT 6 cut(s) 167, 196, 254, 549, 583, 913
AluI AGCT 6 cut(s) 167, 196, 254, 549, 583, 913
Alw21I GWGCWC 1 cut(s) 198
AlwI GGATC 1 cut(s) 297
Aor13HI TCCGGA 1 cut(s) 496
AoxI GGCC 1 cut(s) 963
ApeKI GCWGC 4 cut(s) 382, 546, 565, 766
AspLEI GCGC 1 cut(s) 686
AspS9I GGNCC 1 cut(s) 964
AsuII TTCGAA 1 cut(s) 920
AsuNHI GCTAGC 1 cut(s) 167
BaeI ACNNNNGTAYC 2 cut(s) 807, 840
BanI GGYRCC 2 cut(s) 136, 553
BanII GRGCYC 1 cut(s) 198
BarI GAAGNNNNNNTAC 2 cut(s) 980, 1012
BbsI GAAGAC 1 cut(s) 929
Bbv12I GWGCWC 1 cut(s) 198
BbvI GCAGC 4 cut(s) 369, 558, 577, 753
BccI CCATC 3 cut(s) 57, 571, 890
BceAI ACGGC 1 cut(s) 28
BciT130I CCWGG 1 cut(s) 187
BciVI GTATCC 1 cut(s) 808
BfaI CTAG 1 cut(s) 168
BfmI CTRYAG 1 cut(s) 342
BfoI RGCGCY 1 cut(s) 687
BfuI GTATCC 1 cut(s) 808
BisI GCNGC 4 cut(s) 383, 547, 566, 767
BlsI GCNGC 4 cut(s) 384, 548, 567, 768
Bme1390I CCNGG 1 cut(s) 187
BmeRI GACNNNNNGTC 1 cut(s) 711
BmgT120I GGNCC 1 cut(s) 964
BmiI GGNNCC 2 cut(s) 138, 555
BmrFI CCNGG 1 cut(s) 187
BmsI GCATC 2 cut(s) 415, 830
BmtI GCTAGC 1 cut(s) 171
BpiI GAAGAC 1 cut(s) 929
Bpu14I TTCGAA 1 cut(s) 920
BpuEI CTTGAG 1 cut(s) 425
BsaHI GRCGYC 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 224
BsaWI WCCGGW 2 cut(s) 351, 496
BsaXI ACNNNNNCTCC 2 cut(s) 250, 280
Bsc4I CCNNNNNNNGG 4 cut(s) 11, 358, 378, 810
Bse1I ACTGG 2 cut(s) 129, 331
BseAI TCCGGA 1 cut(s) 496
BseBI CCWGG 1 cut(s) 187
BseDI CCNNGG 1 cut(s) 224
BseGI GGATG 2 cut(s) 466, 845
BseLI CCNNNNNNNGG 4 cut(s) 11, 358, 378, 810
BseMII CTCAG 2 cut(s) 187, 575
BseNI ACTGG 2 cut(s) 129, 331
BseRI GAGGAG 2 cut(s) 83, 428
BseXI GCAGC 4 cut(s) 369, 558, 577, 753
Bsh1236I CGCG 1 cut(s) 217
Bsh1285I CGRYCG 1 cut(s) 352
BshFI GGCC 1 cut(s) 965
BshNI GGYRCC 2 cut(s) 136, 553
BsiEI CGRYCG 1 cut(s) 352
BsiHKAI GWGCWC 1 cut(s) 198
BsiSI CCGG 3 cut(s) 352, 497, 962
BslI CCNNNNNNNGG 4 cut(s) 11, 358, 378, 810
BsmI GAATGC 2 cut(s) 389, 481
BsnI GGCC 1 cut(s) 965
Bsp119I TTCGAA 1 cut(s) 920
Bsp1286I GDGCHC 1 cut(s) 198
Bsp13I TCCGGA 1 cut(s) 496
Bsp1407I TGTACA 1 cut(s) 395
Bsp143I GATC 2 cut(s) 289, 727
BspACI CCGC 4 cut(s) 134, 646, 835, 879
BspANI GGCC 1 cut(s) 965
BspCNI CTCAG 2 cut(s) 186, 576
BspEI TCCGGA 1 cut(s) 496
BspFNI CGCG 1 cut(s) 217
BspLI GGNNCC 2 cut(s) 138, 555
BspOI GCTAGC 1 cut(s) 171
BspPI GGATC 1 cut(s) 297
BspT104I TTCGAA 1 cut(s) 920
BspT107I GGYRCC 2 cut(s) 136, 553
BsrGI TGTACA 1 cut(s) 395
BsrI ACTGG 2 cut(s) 129, 331
BssECI CCNNGG 1 cut(s) 224
BssMI GATC 2 cut(s) 289, 727
BssNI GRCGYC 1 cut(s) 15
BssT1I CCWWGG 1 cut(s) 224
Bst2UI CCWGG 1 cut(s) 187
Bst4CI ACNGT 1 cut(s) 820
BstACI GRCGYC 1 cut(s) 15
BstAUI TGTACA 1 cut(s) 395
BstBI TTCGAA 1 cut(s) 920
BstC8I GCNNGC 3 cut(s) 169, 387, 915
BstDEI CTNAG 2 cut(s) 173, 584
BstF5I GGATG 2 cut(s) 466, 845
BstFNI CGCG 1 cut(s) 217
BstH2I RGCGCY 1 cut(s) 687
BstHHI GCGC 1 cut(s) 686
BstKTI GATC 2 cut(s) 292, 730
BstMBI GATC 2 cut(s) 289, 727
BstMCI CGRYCG 1 cut(s) 352
BstMWI GCNNNNNNNGC 5 cut(s) 382, 478, 562, 626, 690
BstNI CCWGG 1 cut(s) 187
BstNSI RCATGY 1 cut(s) 942
BstSCI CCNGG 1 cut(s) 185
BstSFI CTRYAG 1 cut(s) 342
BstUI CGCG 1 cut(s) 217
BstV1I GCAGC 4 cut(s) 369, 558, 577, 753
BstV2I GAAGAC 1 cut(s) 929
BsuI GTATCC 1 cut(s) 808
BsuRI GGCC 1 cut(s) 965
BtgZI GCGATG 1 cut(s) 635
BtsCI GGATG 2 cut(s) 466, 845
BtsI GCAGTG 1 cut(s) 688
BtsIMutI CAGTG 3 cut(s) 122, 324, 688
Cac8I GCNNGC 3 cut(s) 169, 387, 915
CfoI GCGC 1 cut(s) 686
Cfr13I GGNCC 1 cut(s) 964
CseI GACGC 2 cut(s) 4, 618
Csp6I GTAC 4 cut(s) 160, 267, 396, 801
CspCI CAANNNNNGTGG 2 cut(s) 856, 891
CviAII CATG 3 cut(s) 79, 939, 978
CviQI GTAC 4 cut(s) 160, 267, 396, 801
DdeI CTNAG 2 cut(s) 173, 584
DpnI GATC 2 cut(s) 291, 729
DpnII GATC 2 cut(s) 289, 727
DriI GACNNNNNGTC 1 cut(s) 711
Eam1105I GACNNNNNGTC 1 cut(s) 711
Ecl136II GAGCTC 1 cut(s) 196
Eco130I CCWWGG 1 cut(s) 224
Eco24I GRGCYC 1 cut(s) 198
Eco53kI GAGCTC 1 cut(s) 196
Eco57I CTGAAG 1 cut(s) 982
EcoICRI GAGCTC 1 cut(s) 196
EcoRII CCWGG 1 cut(s) 185
EcoT14I CCWWGG 1 cut(s) 224
EcoT38I GRGCYC 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 224
FaeI CATG 3 cut(s) 82, 942, 981
FaiI YATR 9 cut(s) 80, 276, 287, 417, 651, 785, 940, 979, 990
FalI AAGNNNNNCTT 2 cut(s) 714, 746
FatI CATG 3 cut(s) 78, 938, 977
FauI CCCGC 1 cut(s) 828
FblI GTMKAC 1 cut(s) 348
Fnu4HI GCNGC 4 cut(s) 383, 547, 566, 767
FokI GGATG 2 cut(s) 473, 852
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 4 cut(s) 383, 547, 566, 767
FspBI CTAG 1 cut(s) 168
GlaI GCGC 1 cut(s) 685
GluI GCNGC 4 cut(s) 383, 547, 566, 767
HaeII RGCGCY 1 cut(s) 687
HaeIII GGCC 1 cut(s) 965
HapII CCGG 3 cut(s) 352, 497, 962
HgaI GACGC 2 cut(s) 4, 618
HhaI GCGC 1 cut(s) 686
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 3 cut(s) 82, 942, 981
Hin6I GCGC 1 cut(s) 684
HinP1I GCGC 1 cut(s) 684
HincII GTYRAC 2 cut(s) 213, 349
HindII GTYRAC 2 cut(s) 213, 349
HindIII AAGCTT 1 cut(s) 911
HinfI GANTC 4 cut(s) 119, 300, 712, 925
HpaI GTTAAC 1 cut(s) 213
HpaII CCGG 3 cut(s) 352, 497, 962
Hpy166II GTNNAC 5 cut(s) 213, 349, 608, 760, 801
Hpy188I TCNGA 5 cut(s) 25, 258, 424, 634, 955
Hpy188III TCNNGA 4 cut(s) 206, 497, 641, 1000
Hpy8I GTNNAC 5 cut(s) 213, 349, 608, 760, 801
Hpy99I CGWCG 2 cut(s) 10, 634
HpyAV CCTTC 3 cut(s) 22, 88, 785
HpyCH4III ACNGT 1 cut(s) 820
HpyCH4IV ACGT 1 cut(s) 610
HpyF10VI GCNNNNNNNGC 5 cut(s) 382, 478, 562, 626, 690
HpyF3I CTNAG 2 cut(s) 173, 584
HpySE526I ACGT 1 cut(s) 610
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 3 cut(s) 82, 942, 981
HspAI GCGC 1 cut(s) 684
Kpn2I TCCGGA 1 cut(s) 496
KspAI GTTAAC 1 cut(s) 213
Kzo9I GATC 2 cut(s) 289, 727
LmnI GCTCC 2 cut(s) 354, 580
Lsp1109I GCAGC 4 cut(s) 369, 558, 577, 753
LweI GCATC 2 cut(s) 415, 830
MaeI CTAG 1 cut(s) 168
MaeII ACGT 1 cut(s) 610
MaeIII GTNAC 2 cut(s) 120, 823
MalI GATC 2 cut(s) 291, 729
MboI GATC 2 cut(s) 289, 727
MfeI CAATTG 1 cut(s) 753
MhlI GDGCHC 1 cut(s) 198
MluCI AATT 3 cut(s) 666, 678, 753
MluI ACGCGT 1 cut(s) 215
MlyI GAGTC 3 cut(s) 128, 721, 919
MmeI TCCRAC 2 cut(s) 91, 612
MroI TCCGGA 1 cut(s) 496
MseI TTAA 3 cut(s) 102, 212, 477
MslI CAYNNNNRTG 1 cut(s) 830
MspI CCGG 3 cut(s) 352, 497, 962
MspR9I CCNGG 1 cut(s) 187
MunI CAATTG 1 cut(s) 753
Mva1269I GAATGC 2 cut(s) 389, 481
MvaI CCWGG 1 cut(s) 187
MvnI CGCG 1 cut(s) 217
MwoI GCNNNNNNNGC 5 cut(s) 382, 478, 562, 626, 690
NdeII GATC 2 cut(s) 289, 727
NheI GCTAGC 1 cut(s) 167
NlaIII CATG 3 cut(s) 82, 942, 981
NlaIV GGNNCC 2 cut(s) 138, 555
NmuCI GTSAC 2 cut(s) 120, 823
NspI RCATGY 1 cut(s) 942
NspV TTCGAA 1 cut(s) 920
PctI GAATGC 2 cut(s) 389, 481
PfeI GAWTC 1 cut(s) 300
PflFI GACNNNGTC 1 cut(s) 14
PkrI GCNGC 4 cut(s) 384, 548, 567, 768
PleI GAGTC 3 cut(s) 127, 720, 919
PpsI GAGTC 3 cut(s) 127, 720, 919
Psp124BI GAGCTC 1 cut(s) 198
Psp1406I AACGTT 1 cut(s) 610
Psp6I CCWGG 1 cut(s) 185
PspGI CCWGG 1 cut(s) 185
PspN4I GGNNCC 2 cut(s) 138, 555
PspPI GGNCC 1 cut(s) 964
PsyI GACNNNGTC 1 cut(s) 14
RsaI GTAC 4 cut(s) 161, 268, 397, 802
RsaNI GTAC 4 cut(s) 160, 267, 396, 801
RseI CAYNNNNRTG 1 cut(s) 830
SacI GAGCTC 1 cut(s) 198
SalI GTCGAC 1 cut(s) 347
SaqAI TTAA 3 cut(s) 102, 212, 477
SatI GCNGC 4 cut(s) 383, 547, 566, 767
Sau3AI GATC 2 cut(s) 289, 727
Sau96I GGNCC 1 cut(s) 964
SchI GAGTC 3 cut(s) 128, 721, 919
ScrFI CCNGG 1 cut(s) 187
SduI GDGCHC 1 cut(s) 198
SfaNI GCATC 2 cut(s) 415, 830
SfcI CTRYAG 1 cut(s) 342
SfuI TTCGAA 1 cut(s) 920
SmiMI CAYNNNNRTG 1 cut(s) 830
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
Sse9I AATT 3 cut(s) 666, 678, 753
SsiI CCGC 4 cut(s) 134, 646, 835, 879
SspI AATATT 1 cut(s) 521
SspMI CTAG 1 cut(s) 168
SstI GAGCTC 1 cut(s) 198
StyD4I CCNGG 1 cut(s) 185
StyI CCWWGG 1 cut(s) 224
TaaI ACNGT 1 cut(s) 820
TaiI ACGT 1 cut(s) 613
TaqI TCGA 5 cut(s) 92, 234, 348, 726, 920
TasI AATT 3 cut(s) 666, 678, 753
TatI WGTACW 1 cut(s) 395
TfiI GAWTC 1 cut(s) 300
Tru1I TTAA 3 cut(s) 102, 212, 477
Tru9I TTAA 3 cut(s) 102, 212, 477
TscAI CASTG 3 cut(s) 129, 331, 695
TseFI GTSAC 2 cut(s) 120, 823
TseI GCWGC 4 cut(s) 382, 546, 565, 766
Tsp45I GTSAC 2 cut(s) 120, 823
TspDTI ATGAA 1 cut(s) 264
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 3 cut(s) 129, 331, 695
Tth111I GACNNNGTC 1 cut(s) 14
XceI RCATGY 1 cut(s) 942
XmiI GTMKAC 1 cut(s) 348
XspI CTAG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.