Rw5G009830

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000886
Physical Location & Seq
Reverse (-)
10616265 .. 10617325
1061 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G009830.1

Sequence Viewer

Length: 1011 bp
ATGCCGACGGACGGCGTCGTTTCGGAGAAGGAGGACAAGCGAAGAAGAAGAAGAAGATGGGAGGAGTTAGACATGGACTGCTTATCGAAGGTGTTTAACAGAGTTGGAATGGAGTCACTGATTTTGGCGGTGCCTTTTGTCTGCAAGTCGTGGTACAAAGCTAGCCTCAGTCCTTTATCCTGGCAAGAGCTCTCATTTCCAGAGCTAACGCGTTGTTCTTGGAGTTTCGATGATGAAGCTCGGAGTTTCGGTACATTTTATGATAAGTTTATGGATCATTTTGGAATCAATAGGAGTAGTTTCTCAGTCACTGGTTTTGTGAAGTCTGTAGTCGACCGGAGCAAAGGGGGTGCTACCCTGCTCTGGCTGCCTGCATTCTGTACAGAGGAAGCATTGAGATATGTTTCAGATGCGTGTCCTCTCCTCAAGTTTTTGGGTTTTGTGGATGACTTGGTGCTTTTTAAGCATTCGCAAGTTGTTCCGGAAGTGATTGGGAAATGGAAATATTTGGAGGTGTTGCATTTGGGGGGCAGCTCGGTGCCTATAATGCAGCAGATGTTGATGGAGCTGAGAAAAGGAAAACGCTTTAGTGAACGTTTCAAGGCCATGTTTCCGTCCGAAAGTCCTGACCGCTATAATGTTTTGGAGAGAATCGTTGTGCAAATTGGCGCTCACTGCAAAAGATTTACGACTTTGAGTCTTTATCAAGTCGATCTTGGTCAAGTTGAGGCATTGGCAATTGTGAACTTGCTGCCAAACCTTCGGTGCATATCGGCAACAGGGTGTACCATTGAAAGGGATACTGTTGTCACAATAATGCGGGGATGCAAAAATCTTGGGCTTTTTCGTGCCAATCATTGTGGCGGTTTTGAAGATAATGATGGAGAAATATCCAAGCTTGCTTCCAAGACTCGTCATTTTGCATGTGAGGGTTGTTCAGACCTTCCAGCCCGTGCTACTGCATGGAGGAAGTATGTTTTCATCAGGATTGGATGGGATATTGTGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

336

Amino Acids

38.28

Weight (kDa)

8.67

Isoelectric Point (pI)

51.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 130, 538
AccI GTMKAC 1 cut(s) 333
AccII CGCG 1 cut(s) 211
AccIII TCCGGA 1 cut(s) 481
AciI CCGC 4 cut(s) 128, 631, 820, 864
AclI AACGTT 1 cut(s) 595
AclWI GGATC 1 cut(s) 282
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 4 cut(s) 155, 253, 382, 787
AfiI CCNNNNNNNGG 3 cut(s) 11, 363, 795
AflIII ACRYGT 1 cut(s) 209
AgsI TTSAA 3 cut(s) 601, 794, 872
AhdI GACNNNNNGTC 1 cut(s) 696
AjnI CCWGG 1 cut(s) 179
AluBI AGCT 7 cut(s) 161, 190, 205, 239, 534, 568, 898
AluI AGCT 7 cut(s) 161, 190, 205, 239, 534, 568, 898
Alw21I GWGCWC 1 cut(s) 192
AlwI GGATC 1 cut(s) 282
AlwNI CAGNNNCTG 1 cut(s) 311
Aor13HI TCCGGA 1 cut(s) 481
AoxI GGCC 1 cut(s) 603
ApeKI GCWGC 4 cut(s) 367, 531, 550, 751
AspLEI GCGC 1 cut(s) 671
AsuNHI GCTAGC 1 cut(s) 161
BaeI ACNNNNGTAYC 2 cut(s) 792, 825
BanI GGYRCC 2 cut(s) 130, 538
BanII GRGCYC 1 cut(s) 192
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 4 cut(s) 354, 543, 562, 738
BccI CCATC 4 cut(s) 51, 556, 875, 987
BceAI ACGGC 1 cut(s) 28
BciT130I CCWGG 1 cut(s) 181
BciVI GTATCC 1 cut(s) 793
BfaI CTAG 1 cut(s) 162
BfmI CTRYAG 1 cut(s) 327
BfoI RGCGCY 1 cut(s) 672
BfuI GTATCC 1 cut(s) 793
BisI GCNGC 4 cut(s) 368, 532, 551, 752
BlsI GCNGC 4 cut(s) 369, 533, 552, 753
Bme1390I CCNGG 1 cut(s) 181
BmeRI GACNNNNNGTC 1 cut(s) 696
BmiI GGNNCC 2 cut(s) 132, 540
BmrFI CCNGG 1 cut(s) 181
BmsI GCATC 2 cut(s) 400, 815
BmtI GCTAGC 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 410
BsaHI GRCGYC 1 cut(s) 15
BsaWI WCCGGW 2 cut(s) 336, 481
BsaXI ACNNNNNCTCC 2 cut(s) 235, 265
Bsc4I CCNNNNNNNGG 3 cut(s) 11, 363, 795
Bse1I ACTGG 1 cut(s) 316
BseAI TCCGGA 1 cut(s) 481
BseBI CCWGG 1 cut(s) 181
BseGI GGATG 3 cut(s) 451, 830, 998
BseLI CCNNNNNNNGG 3 cut(s) 11, 363, 795
BseMII CTCAG 3 cut(s) 181, 318, 560
BseNI ACTGG 1 cut(s) 316
BseRI GAGGAG 2 cut(s) 77, 413
BseXI GCAGC 4 cut(s) 354, 543, 562, 738
Bsh1236I CGCG 1 cut(s) 211
Bsh1285I CGRYCG 1 cut(s) 337
BshFI GGCC 1 cut(s) 605
BshNI GGYRCC 2 cut(s) 130, 538
BsiEI CGRYCG 1 cut(s) 337
BsiHKAI GWGCWC 1 cut(s) 192
BsiSI CCGG 2 cut(s) 337, 482
BslI CCNNNNNNNGG 3 cut(s) 11, 363, 795
BsmI GAATGC 2 cut(s) 374, 466
BsnI GGCC 1 cut(s) 605
Bsp1286I GDGCHC 1 cut(s) 192
Bsp13I TCCGGA 1 cut(s) 481
Bsp1407I TGTACA 1 cut(s) 380
Bsp143I GATC 2 cut(s) 274, 712
BspACI CCGC 4 cut(s) 128, 631, 820, 864
BspANI GGCC 1 cut(s) 605
BspCNI CTCAG 3 cut(s) 180, 317, 561
BspEI TCCGGA 1 cut(s) 481
BspFNI CGCG 1 cut(s) 211
BspLI GGNNCC 2 cut(s) 132, 540
BspOI GCTAGC 1 cut(s) 165
BspPI GGATC 1 cut(s) 282
BspT107I GGYRCC 2 cut(s) 130, 538
BsrGI TGTACA 1 cut(s) 380
BsrI ACTGG 1 cut(s) 316
BssMI GATC 2 cut(s) 274, 712
BssNI GRCGYC 1 cut(s) 15
Bst2UI CCWGG 1 cut(s) 181
Bst4CI ACNGT 1 cut(s) 805
BstACI GRCGYC 1 cut(s) 15
BstAUI TGTACA 1 cut(s) 380
BstC8I GCNNGC 3 cut(s) 163, 372, 900
BstDEI CTNAG 3 cut(s) 167, 304, 569
BstF5I GGATG 3 cut(s) 451, 830, 998
BstFNI CGCG 1 cut(s) 211
BstH2I RGCGCY 1 cut(s) 672
BstHHI GCGC 1 cut(s) 671
BstKTI GATC 2 cut(s) 277, 715
BstMBI GATC 2 cut(s) 274, 712
BstMCI CGRYCG 1 cut(s) 337
BstMWI GCNNNNNNNGC 4 cut(s) 367, 463, 547, 675
BstNI CCWGG 1 cut(s) 181
BstNSI RCATGY 1 cut(s) 927
BstSCI CCNGG 1 cut(s) 179
BstSFI CTRYAG 1 cut(s) 327
BstUI CGCG 1 cut(s) 211
BstV1I GCAGC 4 cut(s) 354, 543, 562, 738
BsuI GTATCC 1 cut(s) 793
BsuRI GGCC 1 cut(s) 605
BtsCI GGATG 3 cut(s) 451, 830, 998
BtsI GCAGTG 1 cut(s) 673
BtsIMutI CAGTG 3 cut(s) 116, 309, 673
Cac8I GCNNGC 3 cut(s) 163, 372, 900
CaiI CAGNNNCTG 1 cut(s) 311
CfoI GCGC 1 cut(s) 671
CseI GACGC 1 cut(s) 4
Csp6I GTAC 4 cut(s) 154, 252, 381, 786
CspCI CAANNNNNGTGG 2 cut(s) 841, 876
CviAII CATG 4 cut(s) 73, 607, 924, 963
CviQI GTAC 4 cut(s) 154, 252, 381, 786
DdeI CTNAG 3 cut(s) 167, 304, 569
DpnI GATC 2 cut(s) 276, 714
DpnII GATC 2 cut(s) 274, 712
DriI GACNNNNNGTC 1 cut(s) 696
Eam1105I GACNNNNNGTC 1 cut(s) 696
Ecl136II GAGCTC 1 cut(s) 190
Eco24I GRGCYC 1 cut(s) 192
Eco53kI GAGCTC 1 cut(s) 190
EcoICRI GAGCTC 1 cut(s) 190
EcoRII CCWGG 1 cut(s) 179
EcoT38I GRGCYC 1 cut(s) 192
FaeI CATG 4 cut(s) 76, 610, 927, 966
FalI AAGNNNNNCTT 2 cut(s) 699, 731
FatI CATG 4 cut(s) 72, 606, 923, 962
FauI CCCGC 1 cut(s) 813
FblI GTMKAC 1 cut(s) 333
Fnu4HI GCNGC 4 cut(s) 368, 532, 551, 752
FokI GGATG 3 cut(s) 458, 837, 1005
FriOI GRGCYC 1 cut(s) 192
Fsp4HI GCNGC 4 cut(s) 368, 532, 551, 752
FspBI CTAG 1 cut(s) 162
GlaI GCGC 1 cut(s) 670
GluI GCNGC 4 cut(s) 368, 532, 551, 752
HaeII RGCGCY 1 cut(s) 672
HaeIII GGCC 1 cut(s) 605
HapII CCGG 2 cut(s) 337, 482
HgaI GACGC 1 cut(s) 4
HhaI GCGC 1 cut(s) 671
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 4 cut(s) 76, 610, 927, 966
Hin6I GCGC 1 cut(s) 669
HinP1I GCGC 1 cut(s) 669
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HindIII AAGCTT 1 cut(s) 896
HinfI GANTC 5 cut(s) 113, 285, 651, 697, 910
HpaII CCGG 2 cut(s) 337, 482
Hpy166II GTNNAC 4 cut(s) 334, 593, 745, 786
Hpy188I TCNGA 5 cut(s) 25, 243, 409, 619, 940
Hpy188III TCNNGA 4 cut(s) 200, 482, 626, 985
Hpy8I GTNNAC 4 cut(s) 334, 593, 745, 786
Hpy99I CGWCG 2 cut(s) 10, 20
HpyAV CCTTC 4 cut(s) 22, 82, 770, 953
HpyCH4III ACNGT 1 cut(s) 805
HpyCH4IV ACGT 1 cut(s) 595
HpyF10VI GCNNNNNNNGC 4 cut(s) 367, 463, 547, 675
HpyF3I CTNAG 3 cut(s) 167, 304, 569
HpySE526I ACGT 1 cut(s) 595
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 4 cut(s) 76, 610, 927, 966
HspAI GCGC 1 cut(s) 669
Kpn2I TCCGGA 1 cut(s) 481
Kzo9I GATC 2 cut(s) 274, 712
LmnI GCTCC 2 cut(s) 339, 565
Lsp1109I GCAGC 4 cut(s) 354, 543, 562, 738
LweI GCATC 2 cut(s) 400, 815
MaeI CTAG 1 cut(s) 162
MaeII ACGT 1 cut(s) 595
MaeIII GTNAC 3 cut(s) 114, 307, 808
MalI GATC 2 cut(s) 276, 714
MboI GATC 2 cut(s) 274, 712
MboII GAAGA 6 cut(s) 54, 57, 60, 63, 66, 884
MfeI CAATTG 1 cut(s) 738
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 2 cut(s) 663, 738
MluI ACGCGT 1 cut(s) 209
MlyI GAGTC 3 cut(s) 122, 706, 904
MmeI TCCRAC 1 cut(s) 85
MroI TCCGGA 1 cut(s) 481
MseI TTAA 2 cut(s) 96, 462
MslI CAYNNNNRTG 1 cut(s) 815
MspI CCGG 2 cut(s) 337, 482
MspR9I CCNGG 1 cut(s) 181
MunI CAATTG 1 cut(s) 738
Mva1269I GAATGC 2 cut(s) 374, 466
MvaI CCWGG 1 cut(s) 181
MvnI CGCG 1 cut(s) 211
MwoI GCNNNNNNNGC 4 cut(s) 367, 463, 547, 675
NdeII GATC 2 cut(s) 274, 712
NheI GCTAGC 1 cut(s) 161
NlaIII CATG 4 cut(s) 76, 610, 927, 966
NlaIV GGNNCC 2 cut(s) 132, 540
NmuCI GTSAC 3 cut(s) 114, 307, 808
NspI RCATGY 1 cut(s) 927
PctI GAATGC 2 cut(s) 374, 466
PfeI GAWTC 2 cut(s) 285, 651
PflFI GACNNNGTC 1 cut(s) 14
PkrI GCNGC 4 cut(s) 369, 533, 552, 753
PleI GAGTC 3 cut(s) 121, 705, 904
PpsI GAGTC 3 cut(s) 121, 705, 904
Psp124BI GAGCTC 1 cut(s) 192
Psp1406I AACGTT 1 cut(s) 595
Psp6I CCWGG 1 cut(s) 179
PspGI CCWGG 1 cut(s) 179
PspN4I GGNNCC 2 cut(s) 132, 540
PstNI CAGNNNCTG 1 cut(s) 311
PsyI GACNNNGTC 1 cut(s) 14
RsaI GTAC 4 cut(s) 155, 253, 382, 787
RsaNI GTAC 4 cut(s) 154, 252, 381, 786
RseI CAYNNNNRTG 1 cut(s) 815
SacI GAGCTC 1 cut(s) 192
SalI GTCGAC 1 cut(s) 332
SaqAI TTAA 2 cut(s) 96, 462
SatI GCNGC 4 cut(s) 368, 532, 551, 752
Sau3AI GATC 2 cut(s) 274, 712
SchI GAGTC 3 cut(s) 122, 706, 904
ScrFI CCNGG 1 cut(s) 181
SduI GDGCHC 1 cut(s) 192
SfaNI GCATC 2 cut(s) 400, 815
SfcI CTRYAG 1 cut(s) 327
SmiMI CAYNNNNRTG 1 cut(s) 815
SmlI CTYRAG 1 cut(s) 425
SmoI CTYRAG 1 cut(s) 425
Sse9I AATT 2 cut(s) 663, 738
SsiI CCGC 4 cut(s) 128, 631, 820, 864
SspI AATATT 1 cut(s) 506
SspMI CTAG 1 cut(s) 162
SstI GAGCTC 1 cut(s) 192
StyD4I CCNGG 1 cut(s) 179
TaaI ACNGT 1 cut(s) 805
TaiI ACGT 1 cut(s) 598
TaqI TCGA 4 cut(s) 86, 228, 333, 711
TasI AATT 2 cut(s) 663, 738
TatI WGTACW 1 cut(s) 380
TfiI GAWTC 2 cut(s) 285, 651
Tru1I TTAA 2 cut(s) 96, 462
Tru9I TTAA 2 cut(s) 96, 462
TscAI CASTG 3 cut(s) 123, 316, 680
TseFI GTSAC 3 cut(s) 114, 307, 808
TseI GCWGC 4 cut(s) 367, 531, 550, 751
Tsp45I GTSAC 3 cut(s) 114, 307, 808
TspDTI ATGAA 2 cut(s) 249, 970
TspGWI ACGGA 2 cut(s) 23, 603
TspRI CASTG 3 cut(s) 123, 316, 680
Tth111I GACNNNGTC 1 cut(s) 14
XceI RCATGY 1 cut(s) 927
XmiI GTMKAC 1 cut(s) 333
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.