Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001356.1

Orthogroup ID

OG0000886

Physical Location & Seq

Genomic Coordinates Reverse (-)

15043 .. 19095

Gene Structure 4053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001356.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

atggagaggattttgacagtgatggaggtagggattcaagtcggaggggagtcgttaatcagtaccatcaagattacaatactgctcatagcaaaagtttttacagtatgttctttgggtcttcttatggcttcactggcacatggaaggaagctcttgaatgggtgcgtaaggggttctgttgttctcttggacagtgatggtgcagctgcattagtgctagcgagtgggaagaaggcacttgaatgcaatagtgccagcatctgtattttttggagtaatgatattgggacgacgtcgttcaaaataccggcaagaaggcccgattcatggacagcgaagaagaagaagaaggccggattgagagaagaagaagaaggccggattgagcgaagaagatgggaggagttacagttggactgcttgaccaatatactctccagagttgggatggaatctctgcctctggccgtcccttttgtctgcaaatcatggtacaaaactactctcaatcctttatgttggcatagtctcagattcccggaccatgtaccttgtcctttgttcattggtaatgtggatgatgatatgttcattggtaatgttgatggtaatgttgggcctcggagttttgctcccttttatgataagtttatagatcaatgtggaattgataagagtcgtttctctatcactgcttttgtaaattgtgttgtaaactgtagtcgtggaaaggttactttactcgaattacctgaattttgtaccgaagaagcgatgagatatgtttcacataagtggcccctgcttaaggttatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 ubiquitin

Protein Analysis

273

Amino Acids

30.37

Weight (kDa)

8.57

Isoelectric Point (pI)

41.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000886)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g05260 FvH4_3g05270 FvH4_3g09690 FvH4_3g38380 FvH4_3g39340 FvH4_3g39340 FvH4_6g09400 FvH4_6g09680 FvH4_6g09690
rosa_chinensis	RchiOBHm_Chr3g0460331 RchiOBHm_Chr3g0476661 RchiOBHm_Chr5g0014451 RchiOBHm_Chr6g0308401 RchiOBHm_Chr7g0215881
rosa_laevigata	RLG00000001978 RLG00000010644 RLG00000012354 RLG00000012356 RLG00000012358 RLG00000016486 RLG00000025021 RLG00000025022 RLG00000025023 RLG00000032111
rosa_multiflora	Rmu_co8233111.1_g000001 Rmu_co8485739.1_g000001 Rmu_sc0000449.1_g000008 Rmu_sc0000449.1_g000009 Rmu_sc0000449.1_g000010 Rmu_sc0001356.1_g000007 Rmu_sc0003583.1_g000005 Rmu_sc0008241.1_g000015 Rmu_sc0010030.1_g000005
rosa_roxburghii	Rroxscaffold_1G00062120 Rroxscaffold_6G00405110 Rroxscaffold_6G00419610 Rroxscaffold_6G00419620 Rroxscaffold_6G00419630
rosa_rugosa	Rorug03G0156300 Rorug06G0366500
rosa_samantha	Rh2BG091300 Rh2CG093900 Rh3AG099500 Rh3AG099600 Rh3BG103500 Rh3BG103600 Rh3BG239000 Rh3CG105100 Rh3CG105200 Rh3CG105300 Rh3CG233000 Rh3CG233100 Rh3DG104900 Rh3DG105000 Rh3DG232900 Rh5AG113300 Rh5BG110000 Rh5CG121800 Rh5DG109100 Rh6AG476000 Rh6BG290200 Rh6BG290500 Rh6BG316800 Rh6BG486300 Rh6CG491500
rosa_wichuraiana	Rw5G009830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	299
AcoI	YGGCCR	1 cut(s)	468
AcsI	RAATTY	1 cut(s)	758
AcyI	GRCGYC	1 cut(s)	296
AfaI	GTAC	4 cut(s)	64, 497, 552, 766
AfiI	CCNNNNNNNGG	3 cut(s)	330, 447, 811
AflII	CTTAAG	1 cut(s)	809
AgsI	TTSAA	4 cut(s)	38, 160, 245, 304
AleI	CACNNNNGTG	1 cut(s)	796
AluBI	AGCT	2 cut(s)	154, 209
AluI	AGCT	2 cut(s)	154, 209
Alw26I	GTCTC	1 cut(s)	536
AlwNI	CAGNNNCTG	1 cut(s)	264
AoxI	GGCC	6 cut(s)	320, 354, 379, 468, 620, 800
ApeKI	GCWGC	2 cut(s)	206, 209
ApoI	RAATTY	1 cut(s)	758
AspS9I	GGNCC	4 cut(s)	321, 544, 620, 801
AsuC2I	CCSGG	1 cut(s)	542
AsuNHI	GCTAGC	1 cut(s)	220
AvaII	GGWCC	1 cut(s)	544
BbsI	GAAGAC	1 cut(s)	113
BbvI	GCAGC	2 cut(s)	196, 218
BccI	CCATC	6 cut(s)	16, 74, 194, 393, 445, 602
BceAI	ACGGC	1 cut(s)	455
BcnI	CCSGG	1 cut(s)	542
BcoDI	GTCTC	1 cut(s)	536
BfaI	CTAG	1 cut(s)	221
BfmI	CTRYAG	1 cut(s)	721
BfrI	CTTAAG	1 cut(s)	809
BisI	GCNGC	2 cut(s)	207, 210
BlsI	GCNGC	2 cut(s)	208, 211
Bme1390I	CCNGG	1 cut(s)	542
Bme18I	GGWCC	1 cut(s)	544
BmgT120I	GGNCC	4 cut(s)	321, 544, 620, 801
BmiI	GGNNCC	1 cut(s)	803
BmrFI	CCNGG	1 cut(s)	542
BmsI	GCATC	1 cut(s)	270
BmtI	GCTAGC	1 cut(s)	224
BpiI	GAAGAC	1 cut(s)	113
BplI	GAGNNNNNCTC	2 cut(s)	619, 651
BpmI	CTGGAG	1 cut(s)	424
BpuMI	CCSGG	1 cut(s)	542
BsaHI	GRCGYC	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	623
BsaXI	ACNNNNNCTCC	2 cut(s)	398, 428
Bsc4I	CCNNNNNNNGG	3 cut(s)	330, 447, 811
Bse118I	RCCGGY	1 cut(s)	310
Bse1I	ACTGG	1 cut(s)	141
BseDI	CCNNGG	1 cut(s)	623
BseGI	GGATG	2 cut(s)	456, 586
BseLI	CCNNNNNNNGG	3 cut(s)	330, 447, 811
BseMII	CTCAG	1 cut(s)	547
BseNI	ACTGG	1 cut(s)	141
BseRI	GAGGAG	1 cut(s)	419
BseXI	GCAGC	2 cut(s)	196, 218
BsgI	GTGCAG	1 cut(s)	225
BshFI	GGCC	6 cut(s)	322, 356, 381, 470, 622, 802
BsiSI	CCGG	4 cut(s)	311, 357, 382, 542
BslFI	GGGAC	2 cut(s)	304, 458
BslI	CCNNNNNNNGG	3 cut(s)	330, 447, 811
BsmAI	GTCTC	1 cut(s)	536
BsmFI	GGGAC	2 cut(s)	304, 458
BsmI	GAATGC	1 cut(s)	251
BsnI	GGCC	6 cut(s)	322, 356, 381, 470, 622, 802
Bsp143I	GATC	1 cut(s)	658
BspANI	GGCC	6 cut(s)	322, 356, 381, 470, 622, 802
BspCNI	CTCAG	1 cut(s)	546
BspLI	GGNNCC	1 cut(s)	803
BspOI	GCTAGC	1 cut(s)	224
BspTI	CTTAAG	1 cut(s)	809
BsrFI	RCCGGY	1 cut(s)	310
BsrI	ACTGG	1 cut(s)	141
BssAI	RCCGGY	1 cut(s)	310
BssECI	CCNNGG	1 cut(s)	623
BssMI	GATC	1 cut(s)	658
BssNI	GRCGYC	1 cut(s)	296
Bst4CI	ACNGT	5 cut(s)	19, 106, 197, 414, 722
BstACI	GRCGYC	1 cut(s)	296
BstAFI	CTTAAG	1 cut(s)	809
BstC8I	GCNNGC	2 cut(s)	222, 259
BstDEI	CTNAG	1 cut(s)	533
BstENI	CCTNNNNNAGG	1 cut(s)	809
BstF5I	GGATG	2 cut(s)	456, 586
BstKTI	GATC	1 cut(s)	661
BstMAI	GTCTC	1 cut(s)	536
BstMBI	GATC	1 cut(s)	658
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	540
BstSFI	CTRYAG	1 cut(s)	721
BstV1I	GCAGC	2 cut(s)	196, 218
BstV2I	GAAGAC	1 cut(s)	113
BsuRI	GGCC	6 cut(s)	322, 356, 381, 470, 622, 802
BtgZI	GCGATG	1 cut(s)	791
BtsCI	GGATG	2 cut(s)	456, 586
BtsI	GCAGTG	1 cut(s)	693
BtsIMutI	CAGTG	4 cut(s)	24, 134, 202, 693
Cac8I	GCNNGC	2 cut(s)	222, 259
CaiI	CAGNNNCTG	1 cut(s)	264
Cfr10I	RCCGGY	1 cut(s)	310
Cfr13I	GGNCC	4 cut(s)	321, 544, 620, 801
Csp6I	GTAC	4 cut(s)	63, 496, 551, 765
CviAII	CATG	4 cut(s)	143, 330, 492, 548
CviJI	RGCY	9 cut(s)	131, 154, 209, 322, 356, 381, 470, 622, 802
CviKI_1	RGCY	9 cut(s)	131, 154, 209, 322, 356, 381, 470, 622, 802
CviQI	GTAC	4 cut(s)	63, 496, 551, 765
DdeI	CTNAG	1 cut(s)	533
DpnI	GATC	1 cut(s)	660
DpnII	GATC	1 cut(s)	658
EaeI	YGGCCR	1 cut(s)	468
Eco47I	GGWCC	1 cut(s)	544
EcoNI	CCTNNNNNAGG	1 cut(s)	809
FaeI	CATG	4 cut(s)	146, 333, 495, 551
FaqI	GGGAC	2 cut(s)	304, 458
FatI	CATG	4 cut(s)	142, 329, 491, 547
Fnu4HI	GCNGC	2 cut(s)	207, 210
FokI	GGATG	2 cut(s)	463, 593
Fsp4HI	GCNGC	2 cut(s)	207, 210
FspBI	CTAG	1 cut(s)	221
GluI	GCNGC	2 cut(s)	207, 210
GsuI	CTGGAG	1 cut(s)	424
HaeIII	GGCC	6 cut(s)	322, 356, 381, 470, 622, 802
HapII	CCGG	4 cut(s)	311, 357, 382, 542
Hin1I	GRCGYC	1 cut(s)	296
Hin1II	CATG	4 cut(s)	146, 333, 495, 551
HinfI	GANTC	6 cut(s)	34, 50, 326, 455, 537, 679
HpaII	CCGG	4 cut(s)	311, 357, 382, 542
Hpy166II	GTNNAC	1 cut(s)	718
Hpy188I	TCNGA	3 cut(s)	44, 536, 627
Hpy188III	TCNNGA	3 cut(s)	70, 157, 441
Hpy8I	GTNNAC	1 cut(s)	718
Hpy99I	CGWCG	2 cut(s)	298, 301
HpyAV	CCTTC	5 cut(s)	141, 229, 312, 346, 371
HpyCH4III	ACNGT	5 cut(s)	19, 106, 197, 414, 722
HpyCH4IV	ACGT	1 cut(s)	296
HpyCH4V	TGCA	4 cut(s)	206, 212, 249, 486
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpyF3I	CTNAG	1 cut(s)	533
HpySE526I	ACGT	1 cut(s)	296
Hsp92I	GRCGYC	1 cut(s)	296
Hsp92II	CATG	4 cut(s)	146, 333, 495, 551
Kzo9I	GATC	1 cut(s)	658
LmnI	GCTCC	1 cut(s)	640
Lsp1109I	GCAGC	2 cut(s)	196, 218
LweI	GCATC	1 cut(s)	270
MaeI	CTAG	1 cut(s)	221
MaeII	ACGT	1 cut(s)	296
MaeIII	GTNAC	2 cut(s)	408, 736
MalI	GATC	1 cut(s)	660
MboI	GATC	1 cut(s)	658
MluCI	AATT	4 cut(s)	669, 706, 749, 758
MlyI	GAGTC	2 cut(s)	59, 688
MmeI	TCCRAC	2 cut(s)	22, 396
MnlI	CCTC	5 cut(s)	19, 38, 397, 474, 633
MseI	TTAA	2 cut(s)	56, 810
MslI	CAYNNNNRTG	2 cut(s)	244, 796
MspA1I	CMGCKG	1 cut(s)	209
MspCI	CTTAAG	1 cut(s)	809
MspI	CCGG	4 cut(s)	311, 357, 382, 542
MspR9I	CCNGG	1 cut(s)	542
Mva1269I	GAATGC	1 cut(s)	251
MwoI	GCNNNNNNNGC	1 cut(s)	137
NciI	CCSGG	1 cut(s)	542
NdeII	GATC	1 cut(s)	658
NheI	GCTAGC	1 cut(s)	220
NlaIII	CATG	4 cut(s)	146, 333, 495, 551
NlaIV	GGNNCC	1 cut(s)	803
OliI	CACNNNNGTG	1 cut(s)	796
PctI	GAATGC	1 cut(s)	251
PfeI	GAWTC	4 cut(s)	34, 326, 455, 537
PflFI	GACNNNGTC	1 cut(s)	295
PfoI	TCCNGGA	1 cut(s)	540
PkrI	GCNGC	2 cut(s)	208, 211
PleI	GAGTC	2 cut(s)	58, 687
PpsI	GAGTC	2 cut(s)	58, 687
PspN4I	GGNNCC	1 cut(s)	803
PspPI	GGNCC	4 cut(s)	321, 544, 620, 801
PstNI	CAGNNNCTG	1 cut(s)	264
PsyI	GACNNNGTC	1 cut(s)	295
PvuII	CAGCTG	1 cut(s)	209
RsaI	GTAC	4 cut(s)	64, 497, 552, 766
RsaNI	GTAC	4 cut(s)	63, 496, 551, 765
RseI	CAYNNNNRTG	2 cut(s)	244, 796
SaqAI	TTAA	2 cut(s)	56, 810
SatI	GCNGC	2 cut(s)	207, 210
Sau3AI	GATC	1 cut(s)	658
Sau96I	GGNCC	4 cut(s)	321, 544, 620, 801
SchI	GAGTC	2 cut(s)	59, 688
ScrFI	CCNGG	1 cut(s)	542
SetI	ASST	8 cut(s)	30, 156, 211, 299, 556, 738, 757, 816
SfaNI	GCATC	1 cut(s)	270
SfcI	CTRYAG	1 cut(s)	721
SinI	GGWCC	1 cut(s)	544
SmiMI	CAYNNNNRTG	2 cut(s)	244, 796
SmlI	CTYRAG	1 cut(s)	809
SmoI	CTYRAG	1 cut(s)	809
Sse9I	AATT	4 cut(s)	669, 706, 749, 758
SspMI	CTAG	1 cut(s)	221
StyD4I	CCNGG	1 cut(s)	540
TaaI	ACNGT	5 cut(s)	19, 106, 197, 414, 722
TaiI	ACGT	1 cut(s)	299
TaqI	TCGA	1 cut(s)	747
TasI	AATT	4 cut(s)	669, 706, 749, 758
TfiI	GAWTC	4 cut(s)	34, 326, 455, 537
Tru1I	TTAA	2 cut(s)	56, 810
Tru9I	TTAA	2 cut(s)	56, 810
TscAI	CASTG	4 cut(s)	24, 141, 202, 700
TseI	GCWGC	2 cut(s)	206, 209
TspDTI	ATGAA	3 cut(s)	318, 556, 583
TspRI	CASTG	4 cut(s)	24, 141, 202, 700
Tth111I	GACNNNGTC	1 cut(s)	295
Vha464I	CTTAAG	1 cut(s)	809
VpaK11BI	GGWCC	1 cut(s)	544
XagI	CCTNNNNNAGG	1 cut(s)	809
XapI	RAATTY	1 cut(s)	758
XcmI	CCANNNNNNNNNTGG	1 cut(s)	448
XspI	CTAG	1 cut(s)	221
ZraI	GACGTC	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.