Rroxscaffold_6G00419630

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000886
Physical Location & Seq
Forward (+)
41024403 .. 41025527
1125 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00419630.1

Sequence Viewer

Length: 1023 bp
ATGCTGAGATCGCACAAGAAGCTGAAGCCATCGCCAGATCTATCGCCGCCGCCGCCGACGCCGAATATCGACGACGCCGGGAAGAATGACGACCAATCTCCTAGCCGCAGATGGGAGGAGTTAGACGCGGATTGTTTAGCAAACGTGTTTGCCAAGTTTGAGCCCTATCCTTTGTTCACTGCTGTTCCTGTTGATGATGATACTGTTGTTGAACCCAAGAGTTTAGGCCCGTTTTACAATAAATTTGTGGAAGACTACCAAATTGATAGTCCTGGGTTTTCGATCACCGGTTTTATAAAATTGGTTGTCAATCGTAGCAAGGGAAAGGCTCTTGAGCTGAAGCTACCTCAGTTTTGTACAGAAGAAGCATTGAGATGTGTTGCAGATGCTTGTCCTGGAATTAGGGATTTGCAGTTTCCTGATGACTTGGTCCTTTTCAAGGATTCTCAGATTCTTCCTGAAGTGATTGGAAAGTGGAAGTTTCTGGAGCGGTTGACTTTGGGTGGTAACATGGAGAATATTATGAAGCAATTTCAAGTAAGAAAGGGGGACCATTTGAGTAGGGATTTCGAGATGTTGTTGCCGTTGGATGATAGTGTTAGTCCCATCAGCAATAAGAACTTGCATGAAATCCTGGTGCAGGTTGGGATTCACTGCAAGCAGATGCGAGCTTTGCATATTTTTGATGGCTGTGTTGGTCAGCCTGAGGCTGAGGCAATTGTGAAGGGGCTGCCGAATCTTGTGTTCTTGACCCTGGGATCGTCTCGTATTGAACGGAATACTCTTGTAACGCTCTTGCAGGGTTGCGAGAAGCTGTGCTGTTTCAATGTCTGGAATTGTGAAGGTTTTGTGATGGATGGTGAAGAAATGCGGGAGCTTGGTTCCCATATTAGGGAGTTTAGGTGGACGCGGGATCTAACTGGTTATAAGTGCTACCATGTGTTGAAGATGGTTATTTTATCCAGGGCTAGACTAAATCAGATTTTGAGGAAAAGGAACAATTCACTGGGGATAGATCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

340

Amino Acids

38.64

Weight (kDa)

6.1

Isoelectric Point (pI)

58.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 296, 927
Acc36I ACCTGC 1 cut(s) 631
AccBSI CCGCTC 1 cut(s) 490
AccII CGCG 2 cut(s) 128, 910
AciI CCGC 8 cut(s) 47, 50, 53, 106, 128, 490, 871, 910
AclWI GGATC 2 cut(s) 766, 921
AcsI RAATTY 1 cut(s) 242
AcuI CTGAAG 3 cut(s) 44, 359, 480
AcyI GRCGYC 2 cut(s) 59, 75
AfaI GTAC 1 cut(s) 358
AfiI CCNNNNNNNGG 5 cut(s) 112, 439, 640, 891, 892
AflIII ACRYGT 1 cut(s) 144
AgeI ACCGGT 1 cut(s) 287
AgsI TTSAA 6 cut(s) 212, 439, 536, 773, 826, 946
AjnI CCWGG 5 cut(s) 271, 394, 633, 753, 962
AluBI AGCT 6 cut(s) 22, 337, 343, 671, 814, 877
AluI AGCT 6 cut(s) 22, 337, 343, 671, 814, 877
Alw26I GTCTC 1 cut(s) 768
AlwI GGATC 2 cut(s) 766, 921
AoxI GGCC 1 cut(s) 226
ApeKI GCWGC 1 cut(s) 730
ApoI RAATTY 1 cut(s) 242
ArsI GACNNNNNNTTYG 2 cut(s) 253, 285
AsiGI ACCGGT 1 cut(s) 287
AspS9I GGNCC 3 cut(s) 227, 430, 550
AsuC2I CCSGG 1 cut(s) 79
AsuHPI GGTGA 2 cut(s) 277, 872
AvaII GGWCC 2 cut(s) 430, 550
AxyI CCTNAGG 1 cut(s) 705
BaeI ACNNNNGTAYC 2 cut(s) 192, 225
BanII GRGCYC 1 cut(s) 165
BbsI GAAGAC 1 cut(s) 258
BbvCI CCTCAGC 1 cut(s) 711
BbvI GCAGC 1 cut(s) 717
BccI CCATC 7 cut(s) 37, 105, 614, 680, 847, 851, 943
BceAI ACGGC 1 cut(s) 568
BciT130I CCWGG 5 cut(s) 273, 396, 635, 755, 964
BcnI CCSGG 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 768
BfaI CTAG 2 cut(s) 102, 969
BfuAI ACCTGC 1 cut(s) 631
BglII AGATCT 1 cut(s) 37
BisI GCNGC 5 cut(s) 47, 50, 53, 106, 731
BlsI GCNGC 5 cut(s) 48, 51, 54, 107, 732
Bme1390I CCNGG 6 cut(s) 79, 273, 396, 635, 755, 964
Bme18I GGWCC 2 cut(s) 430, 550
BmgT120I GGNCC 3 cut(s) 227, 430, 550
BmiI GGNNCC 2 cut(s) 551, 883
BmrFI CCNGG 6 cut(s) 79, 273, 396, 635, 755, 964
BmrI ACTGGG 1 cut(s) 1016
BmsI GCATC 2 cut(s) 376, 654
BmuI ACTGGG 1 cut(s) 1016
BpiI GAAGAC 1 cut(s) 258
BpmI CTGGAG 1 cut(s) 506
Bpu10I CCTNAGC 1 cut(s) 711
BpuEI CTTGAG 1 cut(s) 353
BpuMI CCSGG 1 cut(s) 79
BsaHI GRCGYC 2 cut(s) 59, 75
BsaJI CCNNGG 4 cut(s) 272, 753, 754, 963
BsaWI WCCGGW 1 cut(s) 287
BsaXI ACNNNNNCTCC 2 cut(s) 887, 917
Bsc4I CCNNNNNNNGG 5 cut(s) 112, 439, 640, 891, 892
Bse118I RCCGGY 1 cut(s) 287
Bse1I ACTGG 2 cut(s) 925, 1011
Bse21I CCTNAGG 1 cut(s) 705
BseBI CCWGG 5 cut(s) 273, 396, 635, 755, 964
BseDI CCNNGG 4 cut(s) 272, 753, 754, 963
BseGI GGATG 2 cut(s) 595, 862
BseLI CCNNNNNNNGG 5 cut(s) 112, 439, 640, 891, 892
BseMII CTCAG 4 cut(s) 362, 461, 696, 702
BseNI ACTGG 2 cut(s) 925, 1011
BseRI GAGGAG 1 cut(s) 131
BseXI GCAGC 1 cut(s) 717
BsgI GTGCAG 1 cut(s) 659
Bsh1236I CGCG 2 cut(s) 128, 910
BshFI GGCC 1 cut(s) 228
BshTI ACCGGT 1 cut(s) 287
BsiSI CCGG 2 cut(s) 78, 288
BslFI GGGAC 2 cut(s) 563, 588
BslI CCNNNNNNNGG 5 cut(s) 112, 439, 640, 891, 892
BsmAI GTCTC 1 cut(s) 768
BsmBI CGTCTC 1 cut(s) 768
BsmFI GGGAC 2 cut(s) 563, 588
BsnI GGCC 1 cut(s) 228
Bsp1286I GDGCHC 1 cut(s) 165
Bsp1407I TGTACA 1 cut(s) 356
Bsp143I GATC 6 cut(s) 8, 37, 282, 758, 913, 1015
BspACI CCGC 8 cut(s) 47, 50, 53, 106, 128, 490, 871, 910
BspANI GGCC 1 cut(s) 228
BspCNI CTCAG 4 cut(s) 361, 460, 697, 703
BspFNI CGCG 2 cut(s) 128, 910
BspLI GGNNCC 2 cut(s) 551, 883
BspMI ACCTGC 1 cut(s) 631
BspPI GGATC 2 cut(s) 766, 921
BsrBI CCGCTC 1 cut(s) 490
BsrFI RCCGGY 1 cut(s) 287
BsrGI TGTACA 1 cut(s) 356
BsrI ACTGG 2 cut(s) 925, 1011
BssAI RCCGGY 1 cut(s) 287
BssECI CCNNGG 4 cut(s) 272, 753, 754, 963
BssMI GATC 6 cut(s) 8, 37, 282, 758, 913, 1015
BssNI GRCGYC 2 cut(s) 59, 75
Bst2UI CCWGG 5 cut(s) 273, 396, 635, 755, 964
Bst4CI ACNGT 1 cut(s) 205
BstACI GRCGYC 2 cut(s) 59, 75
BstAUI TGTACA 1 cut(s) 356
BstC8I GCNNGC 2 cut(s) 659, 669
BstDEI CTNAG 5 cut(s) 5, 348, 447, 705, 711
BstENI CCTNNNNNAGG 2 cut(s) 437, 638
BstF5I GGATG 2 cut(s) 595, 862
BstFNI CGCG 2 cut(s) 128, 910
BstKTI GATC 6 cut(s) 11, 40, 285, 761, 916, 1018
BstMAI GTCTC 1 cut(s) 768
BstMBI GATC 6 cut(s) 8, 37, 282, 758, 913, 1015
BstMWI GCNNNNNNNGC 5 cut(s) 10, 19, 52, 58, 673
BstNI CCWGG 5 cut(s) 273, 396, 635, 755, 964
BstSCI CCNGG 6 cut(s) 77, 271, 394, 633, 753, 962
BstUI CGCG 2 cut(s) 128, 910
BstV1I GCAGC 1 cut(s) 717
BstV2I GAAGAC 1 cut(s) 258
BstX2I RGATCY 2 cut(s) 37, 913
BstYI RGATCY 2 cut(s) 37, 913
Bsu36I CCTNAGG 1 cut(s) 705
BsuRI GGCC 1 cut(s) 228
BtgZI GCGATG 1 cut(s) 15
BtsCI GGATG 2 cut(s) 595, 862
BtsI GCAGTG 2 cut(s) 177, 652
BtsIMutI CAGTG 4 cut(s) 177, 652, 1004, 1018
BveI ACCTGC 1 cut(s) 631
Cac8I GCNNGC 2 cut(s) 659, 669
Cfr10I RCCGGY 1 cut(s) 287
Cfr13I GGNCC 3 cut(s) 227, 430, 550
CseI GACGC 4 cut(s) 67, 83, 134, 916
Csp6I GTAC 1 cut(s) 357
CspAI ACCGGT 1 cut(s) 287
CviAII CATG 3 cut(s) 511, 626, 938
CviQI GTAC 1 cut(s) 357
DdeI CTNAG 5 cut(s) 5, 348, 447, 705, 711
DpnI GATC 6 cut(s) 10, 39, 284, 760, 915, 1017
DpnII GATC 6 cut(s) 8, 37, 282, 758, 913, 1015
Eco24I GRGCYC 1 cut(s) 165
Eco47I GGWCC 2 cut(s) 430, 550
Eco57I CTGAAG 3 cut(s) 44, 359, 480
Eco81I CCTNAGG 1 cut(s) 705
EcoNI CCTNNNNNAGG 2 cut(s) 437, 638
EcoRII CCWGG 5 cut(s) 271, 394, 633, 753, 962
EcoT38I GRGCYC 1 cut(s) 165
Esp3I CGTCTC 1 cut(s) 768
FaeI CATG 3 cut(s) 514, 629, 941
FaiI YATR 8 cut(s) 296, 512, 524, 627, 678, 888, 927, 939
FaqI GGGAC 2 cut(s) 563, 588
FatI CATG 3 cut(s) 510, 625, 937
FauI CCCGC 2 cut(s) 864, 903
Fnu4HI GCNGC 5 cut(s) 47, 50, 53, 106, 731
FokI GGATG 2 cut(s) 602, 869
FriOI GRGCYC 1 cut(s) 165
Fsp4HI GCNGC 5 cut(s) 47, 50, 53, 106, 731
FspBI CTAG 2 cut(s) 102, 969
GluI GCNGC 5 cut(s) 47, 50, 53, 106, 731
GsuI CTGGAG 1 cut(s) 506
HaeIII GGCC 1 cut(s) 228
HapII CCGG 2 cut(s) 78, 288
HgaI GACGC 4 cut(s) 67, 83, 134, 916
Hin1I GRCGYC 2 cut(s) 59, 75
Hin1II CATG 3 cut(s) 514, 629, 941
HincII GTYRAC 1 cut(s) 495
HindII GTYRAC 1 cut(s) 495
HinfI GANTC 4 cut(s) 443, 451, 649, 736
HpaII CCGG 2 cut(s) 78, 288
HphI GGTGA 2 cut(s) 277, 872
Hpy166II GTNNAC 3 cut(s) 177, 495, 906
Hpy188I TCNGA 2 cut(s) 450, 981
Hpy188III TCNNGA 7 cut(s) 332, 419, 458, 485, 571, 748, 832
Hpy8I GTNNAC 3 cut(s) 177, 495, 906
Hpy99I CGWCG 3 cut(s) 61, 74, 77
HpyAV CCTTC 2 cut(s) 718, 836
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 7 cut(s) 383, 412, 625, 640, 657, 676, 799
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 19, 52, 58, 673
HpyF3I CTNAG 5 cut(s) 5, 348, 447, 705, 711
HpySE526I ACGT 1 cut(s) 144
Hsp92I GRCGYC 2 cut(s) 59, 75
Hsp92II CATG 3 cut(s) 514, 629, 941
Kzo9I GATC 6 cut(s) 8, 37, 282, 758, 913, 1015
LmnI GCTCC 2 cut(s) 487, 874
Lsp1109I GCAGC 1 cut(s) 717
LweI GCATC 2 cut(s) 376, 654
MaeI CTAG 2 cut(s) 102, 969
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 2 cut(s) 506, 787
MalI GATC 6 cut(s) 10, 39, 284, 760, 915, 1017
MbiI CCGCTC 1 cut(s) 490
MboI GATC 6 cut(s) 8, 37, 282, 758, 913, 1015
MboII GAAGA 6 cut(s) 94, 263, 374, 446, 875, 958
MfeI CAATTG 1 cut(s) 717
MflI RGATCY 2 cut(s) 37, 913
MhlI GDGCHC 1 cut(s) 165
MluCI AATT 8 cut(s) 242, 261, 299, 399, 530, 717, 835, 1000
MmeI TCCRAC 1 cut(s) 567
MnlI CCTC 5 cut(s) 109, 357, 700, 706, 981
MslI CAYNNNNRTG 1 cut(s) 373
MspI CCGG 2 cut(s) 78, 288
MspR9I CCNGG 6 cut(s) 79, 273, 396, 635, 755, 964
MunI CAATTG 1 cut(s) 717
MvaI CCWGG 5 cut(s) 273, 396, 635, 755, 964
MvnI CGCG 2 cut(s) 128, 910
MwoI GCNNNNNNNGC 5 cut(s) 10, 19, 52, 58, 673
NciI CCSGG 1 cut(s) 79
NdeII GATC 6 cut(s) 8, 37, 282, 758, 913, 1015
NlaIII CATG 3 cut(s) 514, 629, 941
NlaIV GGNNCC 2 cut(s) 551, 883
PasI CCCWGGG 1 cut(s) 754
PfeI GAWTC 4 cut(s) 443, 451, 649, 736
PflFI GACNNNGTC 1 cut(s) 428
PfoI TCCNGGA 1 cut(s) 394
PinAI ACCGGT 1 cut(s) 287
PkrI GCNGC 5 cut(s) 48, 51, 54, 107, 732
PsiI TTATAA 2 cut(s) 296, 927
Psp6I CCWGG 5 cut(s) 271, 394, 633, 753, 962
PspGI CCWGG 5 cut(s) 271, 394, 633, 753, 962
PspN4I GGNNCC 2 cut(s) 551, 883
PspPI GGNCC 3 cut(s) 227, 430, 550
PsuI RGATCY 2 cut(s) 37, 913
PsyI GACNNNGTC 1 cut(s) 428
RsaI GTAC 1 cut(s) 358
RsaNI GTAC 1 cut(s) 357
RseI CAYNNNNRTG 1 cut(s) 373
SatI GCNGC 5 cut(s) 47, 50, 53, 106, 731
Sau3AI GATC 6 cut(s) 8, 37, 282, 758, 913, 1015
Sau96I GGNCC 3 cut(s) 227, 430, 550
ScrFI CCNGG 6 cut(s) 79, 273, 396, 635, 755, 964
SduI GDGCHC 1 cut(s) 165
SfaNI GCATC 2 cut(s) 376, 654
SinI GGWCC 2 cut(s) 430, 550
SmiMI CAYNNNNRTG 1 cut(s) 373
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
Sse9I AATT 8 cut(s) 242, 261, 299, 399, 530, 717, 835, 1000
SsiI CCGC 8 cut(s) 47, 50, 53, 106, 128, 490, 871, 910
SspI AATATT 1 cut(s) 520
SspMI CTAG 2 cut(s) 102, 969
StyD4I CCNGG 6 cut(s) 77, 271, 394, 633, 753, 962
TaaI ACNGT 1 cut(s) 205
TaiI ACGT 1 cut(s) 147
TaqI TCGA 3 cut(s) 69, 281, 570
TasI AATT 8 cut(s) 242, 261, 299, 399, 530, 717, 835, 1000
TatI WGTACW 1 cut(s) 356
TauI GCSGC 4 cut(s) 49, 52, 55, 108
TfiI GAWTC 4 cut(s) 443, 451, 649, 736
TscAI CASTG 3 cut(s) 184, 659, 1011
TseI GCWGC 1 cut(s) 730
TspDTI ATGAA 2 cut(s) 539, 642
TspGWI ACGGA 1 cut(s) 790
TspRI CASTG 3 cut(s) 184, 659, 1011
Tth111I GACNNNGTC 1 cut(s) 428
VpaK11BI GGWCC 2 cut(s) 430, 550
XagI CCTNNNNNAGG 2 cut(s) 437, 638
XapI RAATTY 1 cut(s) 242
XspI CTAG 2 cut(s) 102, 969
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.