Rh3CG105100

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000886
Physical Location & Seq
Reverse (-)
8301780 .. 8303493
1714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG105100.1

Sequence Viewer

Length: 1107 bp
ATGCTGAGACCGCAGAAGAAGCCGAAGCAGTCGCCAGATCTATCGCCGCCGCCGCCGAATAGCGACGACGCCGGGAAGAACGACGACCGATCTCCGAGCCGAAGATGGGAGGAGTTGGACGCGGAGTGTTTAGCAAACGTGTTTGCCAAGGTCGGAATGGAGTCTCTGCTCTTAGCTCTCCCTTTTGTCTGTAAATCATGGTACGCCGCATTTCACAATCCCTTATGCTGGAAATTTCTCCATTTCCCGGAGTTTGAGCCCTATCCTTTGTTCACTGCTGTTCCTGTTGACGATACTATTGTTGAACCCAAGAGTACTTTTGGCCCCTTTTACAATAAATTTGTGGAAGACTACCAAATTGATAGTTCTCAGTTTTCGATCACCGGTTTTATAAAATTGGTTGTCAATCGTAGCAAGGGAAAGGCTCTTGAGCTGAAGCTACCTCAATTTTGTACAGAAGAAGCATTGAGATATGTTGCAGATGCTTGTCCTGGAATTACGTATTTGCAGTTTTCTGATGACTTGGTGCTTTTCAAGCATTCTCAGATTCTTCCGGAGGTGATTGGAAAGTGGAAGTTTCTGGAGCGCTTGACTTTGGGGGGTAATATGGAGAATATTATGAAGCAGTTTCAAGTGAAGAGTGGGGAGCATTTGAGTAGGGATTTCGAGATGTTGTTGCCGTTGGATAGTGTTTGTCCCATCAGCAATCAGAACTTGTTTGAAATCCTGGTGCAGGTTGGCATTCACTGCAAGCGGATGCGGGCTCTGCATATTTTTGATGGCTGTGTTGGTCAGGCTGAGGCTGAGGCAATTGTGACGGGCCTGCCGAATCTTGTGTTCTTGACCCTGGAATCGTCTCGTATTGAACGGAATACTCTTGTTACGCTCTTGCAGGGTTGCAGGAAGCTGTGCTGTTTCAATGTCTGGAATTGTGAAGGTTTTGTGATGGATGCTGAAGAAATGCGGGAGCTTGGTTCCCATATTAGGGAGTTTAGGTGGACGCGGGATCTGACTGGTTATAAGTGCTACCATGTGTTGAAGATGATTATTTTATCCAGGGCTAGATTAACTCAGATATTGAGGAAAAGAACAATTCATTGGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

368

Amino Acids

42.36

Weight (kDa)

7.08

Isoelectric Point (pI)

56.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 392, 1020
Acc36I ACCTGC 1 cut(s) 724
AccII CGCG 2 cut(s) 122, 1003
AccIII TCCGGA 1 cut(s) 553
AclWI GGATC 1 cut(s) 1014
AcsI RAATTY 2 cut(s) 233, 338
AcuI CTGAAG 2 cut(s) 455, 975
AcyI GRCGYC 1 cut(s) 69
AfaI GTAC 3 cut(s) 203, 316, 454
AfeI AGCGCT 1 cut(s) 587
AfiI CCNNNNNNNGG 6 cut(s) 106, 228, 247, 733, 984, 985
AflIII ACRYGT 1 cut(s) 138
AgeI ACCGGT 1 cut(s) 383
AgsI TTSAA 7 cut(s) 305, 535, 632, 722, 866, 919, 1039
AjnI CCWGG 4 cut(s) 490, 726, 846, 1055
AjuI GAANNNNNNNTTGG 1 cut(s) 1081
AluBI AGCT 5 cut(s) 176, 433, 439, 907, 970
AluI AGCT 5 cut(s) 176, 433, 439, 907, 970
Alw26I GTCTC 2 cut(s) 168, 861
AlwI GGATC 1 cut(s) 1014
Aor13HI TCCGGA 1 cut(s) 553
Aor51HI AGCGCT 1 cut(s) 587
AoxI GGCC 2 cut(s) 322, 820
ApoI RAATTY 2 cut(s) 233, 338
AsiGI ACCGGT 1 cut(s) 383
AspLEI GCGC 1 cut(s) 588
AspS9I GGNCC 2 cut(s) 323, 820
AsuC2I CCSGG 2 cut(s) 73, 248
AsuHPI GGTGA 2 cut(s) 373, 571
BaeI ACNNNNGTAYC 2 cut(s) 285, 318
BanII GRGCYC 2 cut(s) 261, 766
BbsI GAAGAC 1 cut(s) 354
BbvCI CCTCAGC 2 cut(s) 798, 804
BccI CCATC 4 cut(s) 99, 707, 773, 940
BceAI ACGGC 1 cut(s) 664
BciT130I CCWGG 4 cut(s) 492, 728, 848, 1057
BcnI CCSGG 2 cut(s) 73, 248
BcoDI GTCTC 2 cut(s) 168, 861
BfaI CTAG 1 cut(s) 1062
BfmI CTRYAG 1 cut(s) 1103
BfoI RGCGCY 1 cut(s) 589
BfuAI ACCTGC 1 cut(s) 724
BglII AGATCT 1 cut(s) 37
BisI GCNGC 4 cut(s) 47, 50, 53, 207
BlsI GCNGC 4 cut(s) 48, 51, 54, 208
BmcAI AGTACT 1 cut(s) 316
Bme1390I CCNGG 6 cut(s) 73, 248, 492, 728, 848, 1057
BmgT120I GGNCC 2 cut(s) 323, 820
BmiI GGNNCC 2 cut(s) 325, 976
BmrFI CCNGG 6 cut(s) 73, 248, 492, 728, 848, 1057
BmsI GCATC 3 cut(s) 472, 747, 940
BpiI GAAGAC 1 cut(s) 354
BpmI CTGGAG 1 cut(s) 602
Bpu10I CCTNAGC 2 cut(s) 798, 804
BpuEI CTTGAG 1 cut(s) 449
BpuMI CCSGG 2 cut(s) 73, 248
BsaAI YACGTR 1 cut(s) 501
BsaHI GRCGYC 1 cut(s) 69
BsaJI CCNNGG 3 cut(s) 147, 846, 1056
BsaWI WCCGGW 2 cut(s) 383, 553
BsaXI ACNNNNNCTCC 2 cut(s) 980, 1010
Bsc4I CCNNNNNNNGG 6 cut(s) 106, 228, 247, 733, 984, 985
Bse118I RCCGGY 1 cut(s) 383
Bse1I ACTGG 1 cut(s) 1018
BseAI TCCGGA 1 cut(s) 553
BseBI CCWGG 4 cut(s) 492, 728, 848, 1057
BseDI CCNNGG 3 cut(s) 147, 846, 1056
BseGI GGATG 2 cut(s) 762, 955
BseLI CCNNNNNNNGG 6 cut(s) 106, 228, 247, 733, 984, 985
BseMII CTCAG 5 cut(s) 383, 557, 789, 795, 1085
BseNI ACTGG 1 cut(s) 1018
BseRI GAGGAG 1 cut(s) 125
BsgI GTGCAG 1 cut(s) 752
Bsh1236I CGCG 2 cut(s) 122, 1003
Bsh1285I CGRYCG 1 cut(s) 88
BshFI GGCC 2 cut(s) 324, 822
BshTI ACCGGT 1 cut(s) 383
BsiEI CGRYCG 1 cut(s) 88
BsiSI CCGG 4 cut(s) 72, 248, 384, 554
BslFI GGGAC 1 cut(s) 681
BslI CCNNNNNNNGG 6 cut(s) 106, 228, 247, 733, 984, 985
BsmAI GTCTC 2 cut(s) 168, 861
BsmBI CGTCTC 1 cut(s) 861
BsmFI GGGAC 1 cut(s) 681
BsmI GAATGC 2 cut(s) 538, 741
BsnI GGCC 2 cut(s) 324, 822
Bsp1286I GDGCHC 2 cut(s) 261, 766
Bsp13I TCCGGA 1 cut(s) 553
Bsp1407I TGTACA 1 cut(s) 452
Bsp143I GATC 4 cut(s) 37, 89, 378, 1006
BspANI GGCC 2 cut(s) 324, 822
BspCNI CTCAG 5 cut(s) 382, 556, 790, 796, 1084
BspEI TCCGGA 1 cut(s) 553
BspFNI CGCG 2 cut(s) 122, 1003
BspLI GGNNCC 2 cut(s) 325, 976
BspMI ACCTGC 1 cut(s) 724
BspPI GGATC 1 cut(s) 1014
BsrFI RCCGGY 1 cut(s) 383
BsrGI TGTACA 1 cut(s) 452
BsrI ACTGG 1 cut(s) 1018
BssAI RCCGGY 1 cut(s) 383
BssECI CCNNGG 3 cut(s) 147, 846, 1056
BssMI GATC 4 cut(s) 37, 89, 378, 1006
BssNI GRCGYC 1 cut(s) 69
BssT1I CCWWGG 1 cut(s) 147
Bst2UI CCWGG 4 cut(s) 492, 728, 848, 1057
Bst6I CTCTTC 1 cut(s) 632
BstACI GRCGYC 1 cut(s) 69
BstAPI GCANNNNNTGC 1 cut(s) 747
BstAUI TGTACA 1 cut(s) 452
BstBAI YACGTR 1 cut(s) 501
BstC8I GCNNGC 3 cut(s) 752, 762, 824
BstDEI CTNAG 7 cut(s) 5, 172, 369, 543, 798, 804, 1071
BstENI CCTNNNNNAGG 1 cut(s) 731
BstF5I GGATG 2 cut(s) 762, 955
BstFNI CGCG 2 cut(s) 122, 1003
BstH2I RGCGCY 1 cut(s) 589
BstHHI GCGC 1 cut(s) 588
BstKTI GATC 4 cut(s) 40, 92, 381, 1009
BstMAI GTCTC 2 cut(s) 168, 861
BstMBI GATC 4 cut(s) 37, 89, 378, 1006
BstMCI CGRYCG 1 cut(s) 88
BstMWI GCNNNNNNNGC 6 cut(s) 10, 19, 52, 535, 747, 766
BstNI CCWGG 4 cut(s) 492, 728, 848, 1057
BstSCI CCNGG 6 cut(s) 71, 246, 490, 726, 846, 1055
BstSFI CTRYAG 1 cut(s) 1103
BstSNI TACGTA 1 cut(s) 501
BstUI CGCG 2 cut(s) 122, 1003
BstV2I GAAGAC 1 cut(s) 354
BstX2I RGATCY 2 cut(s) 37, 1006
BstYI RGATCY 2 cut(s) 37, 1006
BsuRI GGCC 2 cut(s) 324, 822
BtsCI GGATG 2 cut(s) 762, 955
BtsI GCAGTG 2 cut(s) 273, 745
BtsIMutI CAGTG 2 cut(s) 273, 745
BveI ACCTGC 1 cut(s) 724
Cac8I GCNNGC 3 cut(s) 752, 762, 824
CfoI GCGC 1 cut(s) 588
Cfr10I RCCGGY 1 cut(s) 383
Cfr13I GGNCC 2 cut(s) 323, 820
CseI GACGC 3 cut(s) 77, 128, 1009
Csp6I GTAC 3 cut(s) 202, 315, 453
CspAI ACCGGT 1 cut(s) 383
CviAII CATG 2 cut(s) 198, 1031
CviQI GTAC 3 cut(s) 202, 315, 453
DdeI CTNAG 7 cut(s) 5, 172, 369, 543, 798, 804, 1071
DpnI GATC 4 cut(s) 39, 91, 380, 1008
DpnII GATC 4 cut(s) 37, 89, 378, 1006
Eam1104I CTCTTC 1 cut(s) 632
EarI CTCTTC 1 cut(s) 632
Eco105I TACGTA 1 cut(s) 501
Eco130I CCWWGG 1 cut(s) 147
Eco24I GRGCYC 2 cut(s) 261, 766
Eco47III AGCGCT 1 cut(s) 587
Eco57I CTGAAG 2 cut(s) 455, 975
EcoNI CCTNNNNNAGG 1 cut(s) 731
EcoRII CCWGG 4 cut(s) 490, 726, 846, 1055
EcoT14I CCWWGG 1 cut(s) 147
EcoT38I GRGCYC 2 cut(s) 261, 766
ErhI CCWWGG 1 cut(s) 147
Esp3I CGTCTC 1 cut(s) 861
FaeI CATG 2 cut(s) 201, 1034
FaqI GGGAC 1 cut(s) 681
FatI CATG 2 cut(s) 197, 1030
FauI CCCGC 3 cut(s) 753, 957, 996
Fnu4HI GCNGC 4 cut(s) 47, 50, 53, 207
FokI GGATG 2 cut(s) 769, 962
FriOI GRGCYC 2 cut(s) 261, 766
Fsp4HI GCNGC 4 cut(s) 47, 50, 53, 207
FspBI CTAG 1 cut(s) 1062
GlaI GCGC 1 cut(s) 587
GluI GCNGC 4 cut(s) 47, 50, 53, 207
GsuI CTGGAG 1 cut(s) 602
HaeII RGCGCY 1 cut(s) 589
HaeIII GGCC 2 cut(s) 324, 822
HapII CCGG 4 cut(s) 72, 248, 384, 554
HgaI GACGC 3 cut(s) 77, 128, 1009
HhaI GCGC 1 cut(s) 588
Hin1I GRCGYC 1 cut(s) 69
Hin1II CATG 2 cut(s) 201, 1034
Hin6I GCGC 1 cut(s) 586
HinP1I GCGC 1 cut(s) 586
HincII GTYRAC 1 cut(s) 289
HindII GTYRAC 1 cut(s) 289
HinfI GANTC 4 cut(s) 161, 547, 829, 851
HpaII CCGG 4 cut(s) 72, 248, 384, 554
HphI GGTGA 2 cut(s) 373, 571
Hpy166II GTNNAC 3 cut(s) 273, 289, 999
Hpy188I TCNGA 7 cut(s) 96, 155, 517, 546, 711, 1011, 1074
Hpy188III TCNNGA 6 cut(s) 428, 554, 581, 667, 841, 925
Hpy8I GTNNAC 3 cut(s) 273, 289, 999
Hpy99I CGWCG 3 cut(s) 68, 71, 86
HpyAV CCTTC 1 cut(s) 929
HpyCH4IV ACGT 2 cut(s) 138, 500
HpyCH4V TGCA 7 cut(s) 479, 508, 733, 750, 769, 892, 900
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 19, 52, 535, 747, 766
HpyF3I CTNAG 7 cut(s) 5, 172, 369, 543, 798, 804, 1071
HpySE526I ACGT 2 cut(s) 138, 500
Hsp92I GRCGYC 1 cut(s) 69
Hsp92II CATG 2 cut(s) 201, 1034
HspAI GCGC 1 cut(s) 586
Kpn2I TCCGGA 1 cut(s) 553
Kzo9I GATC 4 cut(s) 37, 89, 378, 1006
LmnI GCTCC 3 cut(s) 583, 646, 967
LweI GCATC 3 cut(s) 472, 747, 940
MaeI CTAG 1 cut(s) 1062
MaeII ACGT 2 cut(s) 138, 500
MaeIII GTNAC 2 cut(s) 814, 880
MalI GATC 4 cut(s) 39, 91, 380, 1008
MboI GATC 4 cut(s) 37, 89, 378, 1006
MboII GAAGA 9 cut(s) 28, 88, 114, 359, 470, 542, 649, 968, 1051
MfeI CAATTG 1 cut(s) 810
MflI RGATCY 2 cut(s) 37, 1006
MhlI GDGCHC 2 cut(s) 261, 766
MluCI AATT 9 cut(s) 233, 338, 357, 395, 446, 495, 810, 928, 1092
MlyI GAGTC 1 cut(s) 170
MmeI TCCRAC 3 cut(s) 96, 133, 663
MnlI CCTC 6 cut(s) 103, 453, 550, 793, 799, 1074
MroI TCCGGA 1 cut(s) 553
MseI TTAA 1 cut(s) 1067
MspI CCGG 4 cut(s) 72, 248, 384, 554
MspR9I CCNGG 6 cut(s) 73, 248, 492, 728, 848, 1057
MunI CAATTG 1 cut(s) 810
Mva1269I GAATGC 2 cut(s) 538, 741
MvaI CCWGG 4 cut(s) 492, 728, 848, 1057
MvnI CGCG 2 cut(s) 122, 1003
MwoI GCNNNNNNNGC 6 cut(s) 10, 19, 52, 535, 747, 766
NciI CCSGG 2 cut(s) 73, 248
NdeII GATC 4 cut(s) 37, 89, 378, 1006
NlaIII CATG 2 cut(s) 201, 1034
NlaIV GGNNCC 2 cut(s) 325, 976
NmuCI GTSAC 1 cut(s) 814
PcsI WCGNNNNNNNCGW 1 cut(s) 824
PctI GAATGC 2 cut(s) 538, 741
PfeI GAWTC 3 cut(s) 547, 829, 851
PfoI TCCNGGA 2 cut(s) 246, 490
PinAI ACCGGT 1 cut(s) 383
PkrI GCNGC 4 cut(s) 48, 51, 54, 208
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
Ppu21I YACGTR 1 cut(s) 501
PsiI TTATAA 2 cut(s) 392, 1020
Psp6I CCWGG 4 cut(s) 490, 726, 846, 1055
PspGI CCWGG 4 cut(s) 490, 726, 846, 1055
PspN4I GGNNCC 2 cut(s) 325, 976
PspPI GGNCC 2 cut(s) 323, 820
PsuI RGATCY 2 cut(s) 37, 1006
RsaI GTAC 3 cut(s) 203, 316, 454
RsaNI GTAC 3 cut(s) 202, 315, 453
SaqAI TTAA 1 cut(s) 1067
SatI GCNGC 4 cut(s) 47, 50, 53, 207
Sau3AI GATC 4 cut(s) 37, 89, 378, 1006
Sau96I GGNCC 2 cut(s) 323, 820
ScaI AGTACT 1 cut(s) 316
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 6 cut(s) 73, 248, 492, 728, 848, 1057
SduI GDGCHC 2 cut(s) 261, 766
SfaNI GCATC 3 cut(s) 472, 747, 940
SfcI CTRYAG 1 cut(s) 1103
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
SnaBI TACGTA 1 cut(s) 501
Sse9I AATT 9 cut(s) 233, 338, 357, 395, 446, 495, 810, 928, 1092
SspI AATATT 1 cut(s) 616
SspMI CTAG 1 cut(s) 1062
StyD4I CCNGG 6 cut(s) 71, 246, 490, 726, 846, 1055
StyI CCWWGG 1 cut(s) 147
TaiI ACGT 2 cut(s) 141, 503
TaqI TCGA 2 cut(s) 377, 666
TaqII GACCGA 1 cut(s) 102
TasI AATT 9 cut(s) 233, 338, 357, 395, 446, 495, 810, 928, 1092
TatI WGTACW 2 cut(s) 314, 452
TauI GCSGC 4 cut(s) 49, 52, 55, 209
TfiI GAWTC 3 cut(s) 547, 829, 851
Tru1I TTAA 1 cut(s) 1067
Tru9I TTAA 1 cut(s) 1067
TscAI CASTG 2 cut(s) 280, 752
TseFI GTSAC 1 cut(s) 814
Tsp45I GTSAC 1 cut(s) 814
TspDTI ATGAA 2 cut(s) 635, 1085
TspGWI ACGGA 1 cut(s) 883
TspRI CASTG 2 cut(s) 280, 752
XagI CCTNNNNNAGG 1 cut(s) 731
XapI RAATTY 2 cut(s) 233, 338
XcmI CCANNNNNNNNNTGG 1 cut(s) 154
XspI CTAG 1 cut(s) 1062
ZrmI AGTACT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.