Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000886

Physical Location & Seq

Genomic Coordinates Reverse (-)

3242435 .. 3249251

Gene Structure 6817 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010644

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGAGTCGGCATGGATTGAGGGTTGAATTGGATGCCGGCCAAAGTCTCACCAGTCATTCCCTAGCGACTTATGCAAACCCTTCACTTATGCACAGTGTAAACCCTTATGTCCACGATTACAATCACTTGTATGGGGATCAGGGTTTTGGCCTCGCAATTGTATCGTTCCTGAGGCGAAGGAGGCGAAGGAGTGAGAAGATGGATGATGAGAGAAGAAGATGGGAGGATTTAGACACTGACTGCTTGACGAATGTGTTTTCAAGAGTTAAAATGGAGTCTCTGTTTTTGGCTGTTCCTTTTGTCTGCAAATCATGGTACAAAACAAGTCTCAATCCTTTGTGCTGGAAACGTCTCTGGTTTCCAGATTTTATACCTTATCCTTTGTTTACTGATAAGGCCGAGGATCGGCTTCAACCTGCTCAGAGTTTTGGTCCCTTTTACGATCAGTTTGTTGATGAATATCGAATAAACAAGACTCGGTTCTCTATTGATGCTTTTGTGAAGTTGGTAGTCGATCGTTGCAATGGAATTGCCACTTCTCTCATACTACCTGAATTCTATGACCTGGTGCTTTTCAAGAATTCTCAAATTATTGCACAAGTGATTGGCAAGTGGAAATTTTTGGAGTGCTTGTATTTGGGGAGTAGCTTGGTGAAAATTATGCGGCAGAGAAGATTGAGTAAAAAACATTTGAGTGAACATTTTAAAGTGTTGTTGACAGTGGAAAATCCACCCTGCTATAATGTTCTGGATAGAATCCTTGTGCAGATTGCCACTCATTGCAAACATTTTAAGGAATTATCTATTTCTTTCTGCAATGTTGGTGAAATTGAGGCATCCACAATTGTGAAGTTGCTGCCAAACCTTAAAAAGTTGGATGTGAGCAGTTCTTGCATTGATCGAGATTGTGTTGTTAAACTATTGCAGGGCCTTAAAAAAGGTTGTGCGTTTTCATATCACAAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

323

Amino Acids

37.47

Weight (kDa)

9.16

Isoelectric Point (pI)

56.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000886)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g05260 FvH4_3g05270 FvH4_3g09690 FvH4_3g38380 FvH4_3g39340 FvH4_3g39340 FvH4_6g09400 FvH4_6g09680 FvH4_6g09690
rosa_chinensis	RchiOBHm_Chr3g0460331 RchiOBHm_Chr3g0476661 RchiOBHm_Chr5g0014451 RchiOBHm_Chr6g0308401 RchiOBHm_Chr7g0215881
rosa_laevigata	RLG00000001978 RLG00000010644 RLG00000012354 RLG00000012356 RLG00000012358 RLG00000016486 RLG00000025021 RLG00000025022 RLG00000025023 RLG00000032111
rosa_multiflora	Rmu_co8233111.1_g000001 Rmu_co8485739.1_g000001 Rmu_sc0000449.1_g000008 Rmu_sc0000449.1_g000009 Rmu_sc0000449.1_g000010 Rmu_sc0001356.1_g000007 Rmu_sc0003583.1_g000005 Rmu_sc0008241.1_g000015 Rmu_sc0010030.1_g000005
rosa_roxburghii	Rroxscaffold_1G00062120 Rroxscaffold_6G00405110 Rroxscaffold_6G00419610 Rroxscaffold_6G00419620 Rroxscaffold_6G00419630
rosa_rugosa	Rorug03G0156300 Rorug06G0366500
rosa_samantha	Rh2BG091300 Rh2CG093900 Rh3AG099500 Rh3AG099600 Rh3BG103500 Rh3BG103600 Rh3BG239000 Rh3CG105100 Rh3CG105200 Rh3CG105300 Rh3CG233000 Rh3CG233100 Rh3DG104900 Rh3DG105000 Rh3DG232900 Rh5AG113300 Rh5BG110000 Rh5CG121800 Rh5DG109100 Rh6AG476000 Rh6BG290200 Rh6BG290500 Rh6BG316800 Rh6BG486300 Rh6CG491500
rosa_wichuraiana	Rw5G009830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	424
AciI	CCGC	1 cut(s)	664
AclWI	GGATC	2 cut(s)	144, 411
AcoI	YGGCCR	1 cut(s)	37
AcsI	RAATTY	3 cut(s)	554, 580, 617
AfaI	GTAC	1 cut(s)	317
AfiI	CCNNNNNNNGG	1 cut(s)	405
AgsI	TTSAA	4 cut(s)	26, 261, 413, 577
AjnI	CCWGG	1 cut(s)	564
AleI	CACNNNNGTG	1 cut(s)	845
AluBI	AGCT	1 cut(s)	648
AluI	AGCT	1 cut(s)	648
Alw26I	GTCTC	4 cut(s)	50, 282, 332, 356
AlwI	GGATC	2 cut(s)	144, 411
AoxI	GGCC	4 cut(s)	37, 148, 396, 928
ApeKI	GCWGC	1 cut(s)	856
ApoI	RAATTY	3 cut(s)	554, 580, 617
AspS9I	GGNCC	2 cut(s)	431, 928
AsuHPI	GGTGA	3 cut(s)	40, 664, 836
AvaII	GGWCC	1 cut(s)	431
AxyI	CCTNAGG	1 cut(s)	170
BbvI	GCAGC	1 cut(s)	843
BccI	CCATC	2 cut(s)	193, 213
BcgI	CGANNNNNNTGC	2 cut(s)	144, 178
BciT130I	CCWGG	1 cut(s)	566
BcoDI	GTCTC	4 cut(s)	50, 282, 332, 356
BfaI	CTAG	1 cut(s)	62
BfuAI	ACCTGC	1 cut(s)	424
BisI	GCNGC	2 cut(s)	665, 857
BlsI	GCNGC	2 cut(s)	666, 858
Bme1390I	CCNGG	1 cut(s)	566
Bme18I	GGWCC	1 cut(s)	431
BmgT120I	GGNCC	2 cut(s)	431, 928
BmiI	GGNNCC	1 cut(s)	433
BmrFI	CCNGG	1 cut(s)	566
BmsI	GCATC	3 cut(s)	22, 481, 845
BsaBI	GATNNNNATC	2 cut(s)	120, 459
BsaJI	CCNNGG	1 cut(s)	399
BsaXI	ACNNNNNCTCC	4 cut(s)	266, 296, 617, 647
Bsc4I	CCNNNNNNNGG	1 cut(s)	405
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	51
Bse21I	CCTNAGG	1 cut(s)	170
Bse3DI	GCAATG	3 cut(s)	529, 778, 823
Bse8I	GATNNNNATC	2 cut(s)	120, 459
BseBI	CCWGG	1 cut(s)	566
BseDI	CCNNGG	1 cut(s)	399
BseGI	GGATG	4 cut(s)	37, 208, 836, 883
BseJI	GATNNNNATC	2 cut(s)	120, 459
BseLI	CCNNNNNNNGG	1 cut(s)	405
BseMI	GCAATG	3 cut(s)	529, 778, 823
BseMII	CTCAG	2 cut(s)	161, 434
BseNI	ACTGG	1 cut(s)	51
BseXI	GCAGC	1 cut(s)	843
BsgI	GTGCAG	1 cut(s)	785
Bsh1285I	CGRYCG	1 cut(s)	517
BshFI	GGCC	4 cut(s)	39, 150, 398, 930
BsiEI	CGRYCG	1 cut(s)	517
BsiSI	CCGG	1 cut(s)	36
BslFI	GGGAC	1 cut(s)	417
BslI	CCNNNNNNNGG	1 cut(s)	405
BsmAI	GTCTC	4 cut(s)	50, 282, 332, 356
BsmBI	CGTCTC	1 cut(s)	356
BsmFI	GGGAC	1 cut(s)	417
BsnI	GGCC	4 cut(s)	39, 150, 398, 930
Bsp143I	GATC	5 cut(s)	136, 403, 442, 514, 898
BspACI	CCGC	1 cut(s)	664
BspANI	GGCC	4 cut(s)	39, 150, 398, 930
BspCNI	CTCAG	2 cut(s)	162, 433
BspLI	GGNNCC	1 cut(s)	433
BspMI	ACCTGC	1 cut(s)	424
BspPI	GGATC	2 cut(s)	144, 411
BsrDI	GCAATG	3 cut(s)	529, 778, 823
BsrFI	RCCGGY	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	51
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	1 cut(s)	399
BssMI	GATC	5 cut(s)	136, 403, 442, 514, 898
Bst2UI	CCWGG	1 cut(s)	566
Bst4CI	ACNGT	2 cut(s)	95, 721
BstAPI	GCANNNNNTGC	1 cut(s)	891
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	2 cut(s)	170, 420
BstF5I	GGATG	4 cut(s)	37, 208, 836, 883
BstKTI	GATC	5 cut(s)	139, 406, 445, 517, 901
BstMAI	GTCTC	4 cut(s)	50, 282, 332, 356
BstMBI	GATC	5 cut(s)	136, 403, 442, 514, 898
BstMCI	CGRYCG	1 cut(s)	517
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 181, 891
BstNI	CCWGG	1 cut(s)	566
BstSCI	CCNGG	1 cut(s)	564
BstV1I	GCAGC	1 cut(s)	843
Bsu36I	CCTNAGG	1 cut(s)	170
BsuRI	GGCC	4 cut(s)	39, 150, 398, 930
BtsCI	GGATG	4 cut(s)	37, 208, 836, 883
BtsIMutI	CAGTG	3 cut(s)	100, 234, 726
BveI	ACCTGC	1 cut(s)	424
Cac8I	GCNNGC	1 cut(s)	37
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	2 cut(s)	431, 928
CsiI	ACCWGGT	1 cut(s)	564
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	2 cut(s)	11, 312
CviJI	RGCY	7 cut(s)	39, 150, 290, 398, 409, 648, 930
CviKI_1	RGCY	7 cut(s)	39, 150, 290, 398, 409, 648, 930
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	2 cut(s)	170, 420
DpnI	GATC	5 cut(s)	138, 405, 444, 516, 900
DpnII	GATC	5 cut(s)	136, 403, 442, 514, 898
DraI	TTTAAA	1 cut(s)	706
EaeI	YGGCCR	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	431
Eco81I	CCTNAGG	1 cut(s)	170
EcoO109I	RGGNCCY	1 cut(s)	928
EcoRI	GAATTC	2 cut(s)	554, 580
EcoRII	CCWGG	1 cut(s)	564
Esp3I	CGTCTC	1 cut(s)	356
FaeI	CATG	2 cut(s)	14, 315
FaqI	GGGAC	1 cut(s)	417
FatI	CATG	2 cut(s)	10, 311
Fnu4HI	GCNGC	2 cut(s)	665, 857
FokI	GGATG	4 cut(s)	44, 215, 823, 890
Fsp4HI	GCNGC	2 cut(s)	665, 857
FspBI	CTAG	1 cut(s)	62
GluI	GCNGC	2 cut(s)	665, 857
HaeIII	GGCC	4 cut(s)	39, 150, 398, 930
HapII	CCGG	1 cut(s)	36
Hin1II	CATG	2 cut(s)	14, 315
HincII	GTYRAC	1 cut(s)	717
HindII	GTYRAC	1 cut(s)	717
HinfI	GANTC	4 cut(s)	4, 275, 475, 756
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	3 cut(s)	40, 664, 836
Hpy166II	GTNNAC	5 cut(s)	100, 112, 387, 698, 717
Hpy188I	TCNGA	1 cut(s)	423
Hpy188III	TCNNGA	6 cut(s)	169, 261, 362, 577, 749, 902
Hpy8I	GTNNAC	5 cut(s)	100, 112, 387, 698, 717
HpyAV	CCTTC	3 cut(s)	90, 171, 180
HpyCH4III	ACNGT	2 cut(s)	95, 721
HpyCH4IV	ACGT	1 cut(s)	349
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 181, 891
HpyF3I	CTNAG	2 cut(s)	170, 420
HpySE526I	ACGT	1 cut(s)	349
Hsp92II	CATG	2 cut(s)	14, 315
KroI	GCCGGC	1 cut(s)	35
KroNI	GCCGGC	1 cut(s)	37
Kzo9I	GATC	5 cut(s)	136, 403, 442, 514, 898
Lsp1109I	GCAGC	1 cut(s)	843
LweI	GCATC	3 cut(s)	22, 481, 845
MabI	ACCWGGT	1 cut(s)	564
MaeI	CTAG	1 cut(s)	62
MaeII	ACGT	1 cut(s)	349
MalI	GATC	5 cut(s)	138, 405, 444, 516, 900
MboI	GATC	5 cut(s)	136, 403, 442, 514, 898
MboII	GAAGA	4 cut(s)	208, 225, 228, 684
MfeI	CAATTG	2 cut(s)	156, 843
MlyI	GAGTC	3 cut(s)	13, 284, 469
MmeI	TCCRAC	1 cut(s)	855
MnlI	CCTC	7 cut(s)	12, 161, 165, 174, 217, 394, 826
MroNI	GCCGGC	1 cut(s)	35
MseI	TTAA	6 cut(s)	267, 705, 792, 867, 915, 933
MslI	CAYNNNNRTG	3 cut(s)	129, 693, 845
MspI	CCGG	1 cut(s)	36
MspR9I	CCNGG	1 cut(s)	566
MunI	CAATTG	2 cut(s)	156, 843
MvaI	CCWGG	1 cut(s)	566
MwoI	GCNNNNNNNGC	3 cut(s)	71, 181, 891
NaeI	GCCGGC	1 cut(s)	37
NdeII	GATC	5 cut(s)	136, 403, 442, 514, 898
NgoMIV	GCCGGC	1 cut(s)	35
NlaIII	CATG	2 cut(s)	14, 315
NlaIV	GGNNCC	1 cut(s)	433
NmeAIII	GCCGAG	1 cut(s)	424
OliI	CACNNNNGTG	1 cut(s)	845
PdiI	GCCGGC	1 cut(s)	37
PfeI	GAWTC	1 cut(s)	756
PkrI	GCNGC	2 cut(s)	666, 858
Ple19I	CGATCG	1 cut(s)	517
PleI	GAGTC	3 cut(s)	12, 283, 469
PpsI	GAGTC	3 cut(s)	12, 283, 469
Psp6I	CCWGG	1 cut(s)	564
PspGI	CCWGG	1 cut(s)	564
PspN4I	GGNNCC	1 cut(s)	433
PspPI	GGNCC	2 cut(s)	431, 928
PvuI	CGATCG	1 cut(s)	517
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
RseI	CAYNNNNRTG	3 cut(s)	129, 693, 845
SaqAI	TTAA	6 cut(s)	267, 705, 792, 867, 915, 933
SatI	GCNGC	2 cut(s)	665, 857
Sau3AI	GATC	5 cut(s)	136, 403, 442, 514, 898
Sau96I	GGNCC	2 cut(s)	431, 928
SchI	GAGTC	3 cut(s)	13, 284, 469
ScrFI	CCNGG	1 cut(s)	566
SetI	ASST	8 cut(s)	352, 376, 418, 553, 567, 650, 867, 943
SexAI	ACCWGGT	1 cut(s)	564
SfaNI	GCATC	3 cut(s)	22, 481, 845
SinI	GGWCC	1 cut(s)	431
SmiMI	CAYNNNNRTG	3 cut(s)	129, 693, 845
SsiI	CCGC	1 cut(s)	664
SspMI	CTAG	1 cut(s)	62
StyD4I	CCNGG	1 cut(s)	564
TaaI	ACNGT	2 cut(s)	95, 721
TaiI	ACGT	1 cut(s)	352
TaqI	TCGA	3 cut(s)	463, 513, 901
TauI	GCSGC	1 cut(s)	667
TfiI	GAWTC	1 cut(s)	756
Tru1I	TTAA	6 cut(s)	267, 705, 792, 867, 915, 933
Tru9I	TTAA	6 cut(s)	267, 705, 792, 867, 915, 933
TscAI	CASTG	3 cut(s)	100, 241, 726
TseI	GCWGC	1 cut(s)	856
TspDTI	ATGAA	2 cut(s)	471, 942
TspRI	CASTG	3 cut(s)	100, 241, 726
VpaK11BI	GGWCC	1 cut(s)	431
XapI	RAATTY	3 cut(s)	554, 580, 617
XspI	CTAG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.