Rmu_sc0010030.1_g000005

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010030.1
OG0000886
Physical Location & Seq
Reverse (-)
10165 .. 11256
1092 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010030.1_g000005.1.cds

Sequence Viewer

Length: 1092 bp
atgttgagacctgagaagaagaagatgaagccgtcgtcgccaccatggatcgacggcgtcgtttcgagtcatcgccacgatcaatctctcactcgaagatgggaggatttagaattggactgtttagcaaatgtgtttgccaaagtcggaatggagtcgctgcttctagctctcccttttgtctgcaaatcatggtacgccgcatctctcaatcccttatgctggaagtttctctctttcccagattttgggccctatcctttgttcactggcctgcatgaaatcgattttgaaacccggaaatttggccccttttatgatacgtttataaaaaagtaccgaattcgtaggactcgtttctccatcaccggtttcataaaattggttgtcagtcgtagcaatgggaaggctacttatctcaagctacctggattttgtaccgaagaggccttgagatatgtgtcggaggcgtgtcctgaacttaggatgttgtatttgtgtgatgatttagtgattttcaagcatacccaaatcatttctgaactaattgggaagtggaagtatttggagcacttgactttgggaggaaactgtggggaaattttgaagcaataccgcggaattggggattacttgagtaagaactttgaggcgttaacgtcgttcaaatacaatagcaatgaaactttgcacagaatcctggtacagatcgccgttcactgcaagcattttaggagtctgcatatctttgaaacccttgtgggtgaagttgaagcatgggcaattgtgactatgctgccggatctcacgcacttaaccctggcacaatgttgtattgaacgagatactcttttcacgctcctgcggggctgcaagaagctttgctcatttaatctctggtattgcgaaggttttgaagagtgtgatgaagaattattgaagcttgcttcccatattagcgagttctggtataaaggtggtccaaatgattttaccggcttgaatgagttgaagatgattattttaaccatgtgtttaaagaatcaactttggaggaaagggaagattttactggcagagtattatcagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

363

Amino Acids

42.27

Weight (kDa)

8.4

Isoelectric Point (pI)

42.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 329
AccB7I CCANNNNNTGG 1 cut(s) 248
AccII CGCG 1 cut(s) 618
AciI CCGC 4 cut(s) 201, 616, 618, 865
AclWI GGATC 2 cut(s) 56, 810
AcsI RAATTY 3 cut(s) 302, 342, 600
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 4 cut(s) 197, 338, 439, 705
AfiI CCNNNNNNNGG 2 cut(s) 222, 248
AgeI ACCGGT 1 cut(s) 368
AjnI CCWGG 3 cut(s) 427, 699, 819
AluBI AGCT 4 cut(s) 170, 424, 880, 943
AluI AGCT 4 cut(s) 170, 424, 880, 943
Alw21I GWGCWC 1 cut(s) 573
AlwI GGATC 2 cut(s) 56, 810
AoxI GGCC 4 cut(s) 251, 271, 307, 447
ApaI GGGCCC 1 cut(s) 255
ApeKI GCWGC 3 cut(s) 160, 796, 870
ApoI RAATTY 3 cut(s) 302, 342, 600
AsiGI ACCGGT 1 cut(s) 368
AspS9I GGNCC 4 cut(s) 251, 252, 308, 980
AsuC2I CCSGG 1 cut(s) 298
AsuHPI GGTGA 2 cut(s) 358, 776
AvaII GGWCC 1 cut(s) 980
BaeGI GKGCMC 1 cut(s) 255
BanII GRGCYC 1 cut(s) 255
Bbv12I GWGCWC 1 cut(s) 573
BbvI GCAGC 3 cut(s) 147, 783, 857
BccI CCATC 2 cut(s) 93, 371
BceAI ACGGC 3 cut(s) 16, 70, 698
BciT130I CCWGG 3 cut(s) 429, 701, 821
BcnI CCSGG 1 cut(s) 298
BfaI CTAG 1 cut(s) 167
BisI GCNGC 4 cut(s) 161, 201, 797, 871
BlsI GCNGC 4 cut(s) 162, 202, 798, 872
Bme1390I CCNGG 4 cut(s) 298, 429, 701, 821
Bme18I GGWCC 1 cut(s) 980
BmgT120I GGNCC 4 cut(s) 251, 252, 308, 980
BmiI GGNNCC 2 cut(s) 253, 310
BmrFI CCNGG 4 cut(s) 298, 429, 701, 821
BmsI GCATC 1 cut(s) 212
BpuEI CTTGAG 3 cut(s) 404, 472, 655
BpuMI CCSGG 1 cut(s) 298
Bsa29I ATCGAT 1 cut(s) 285
BsaHI GRCGYC 1 cut(s) 57
BsaJI CCNNGG 3 cut(s) 44, 616, 819
BsaWI WCCGGW 1 cut(s) 368
Bsc4I CCNNNNNNNGG 2 cut(s) 222, 248
Bse118I RCCGGY 2 cut(s) 368, 995
Bse1I ACTGG 2 cut(s) 274, 1077
Bse3DI GCAATG 2 cut(s) 406, 685
BseBI CCWGG 3 cut(s) 429, 701, 821
BseCI ATCGAT 1 cut(s) 285
BseDI CCNNGG 3 cut(s) 44, 616, 819
BseGI GGATG 1 cut(s) 492
BseLI CCNNNNNNNGG 2 cut(s) 222, 248
BseMI GCAATG 2 cut(s) 406, 685
BseNI ACTGG 2 cut(s) 274, 1077
BseSI GKGCMC 1 cut(s) 255
BseXI GCAGC 3 cut(s) 147, 783, 857
Bsh1236I CGCG 1 cut(s) 618
BshFI GGCC 4 cut(s) 253, 273, 309, 449
BshTI ACCGGT 1 cut(s) 368
BshVI ATCGAT 1 cut(s) 285
BsiHKAI GWGCWC 1 cut(s) 573
BsiSI CCGG 4 cut(s) 298, 369, 800, 996
BslI CCNNNNNNNGG 2 cut(s) 222, 248
BsnI GGCC 4 cut(s) 253, 273, 309, 449
Bsp120I GGGCCC 1 cut(s) 251
Bsp1286I GDGCHC 2 cut(s) 255, 573
Bsp143I GATC 4 cut(s) 48, 79, 708, 802
Bsp19I CCATGG 1 cut(s) 44
BspACI CCGC 4 cut(s) 201, 616, 618, 865
BspANI GGCC 4 cut(s) 253, 273, 309, 449
BspCNI CTCAG 1 cut(s) 4
BspDI ATCGAT 1 cut(s) 285
BspFNI CGCG 1 cut(s) 618
BspLI GGNNCC 2 cut(s) 253, 310
BspPI GGATC 2 cut(s) 56, 810
BsrDI GCAATG 2 cut(s) 406, 685
BsrFI RCCGGY 2 cut(s) 368, 995
BsrI ACTGG 2 cut(s) 274, 1077
BssAI RCCGGY 2 cut(s) 368, 995
BssECI CCNNGG 3 cut(s) 44, 616, 819
BssMI GATC 4 cut(s) 48, 79, 708, 802
BssNI GRCGYC 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 44
Bst2UI CCWGG 3 cut(s) 429, 701, 821
Bst4CI ACNGT 2 cut(s) 122, 593
Bst6I CTCTTC 2 cut(s) 438, 912
BstACI GRCGYC 1 cut(s) 57
BstC8I GCNNGC 3 cut(s) 275, 725, 945
BstDEI CTNAG 2 cut(s) 12, 482
BstDSI CCRYGG 2 cut(s) 44, 616
BstF5I GGATG 1 cut(s) 492
BstFNI CGCG 1 cut(s) 618
BstKTI GATC 4 cut(s) 51, 82, 711, 805
BstMBI GATC 4 cut(s) 48, 79, 708, 802
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstNI CCWGG 3 cut(s) 429, 701, 821
BstSCI CCNGG 4 cut(s) 296, 427, 699, 819
BstSLI GKGCMC 1 cut(s) 255
BstUI CGCG 1 cut(s) 618
BstV1I GCAGC 3 cut(s) 147, 783, 857
BstX2I RGATCY 1 cut(s) 802
BstYI RGATCY 1 cut(s) 802
Bsu15I ATCGAT 1 cut(s) 285
BsuRI GGCC 4 cut(s) 253, 273, 309, 449
BsuTUI ATCGAT 1 cut(s) 285
BtgI CCRYGG 2 cut(s) 44, 616
BtgZI GCGATG 1 cut(s) 56
BtsCI GGATG 1 cut(s) 492
BtsI GCAGTG 1 cut(s) 718
BtsIMutI CAGTG 2 cut(s) 267, 718
Cac8I GCNNGC 3 cut(s) 275, 725, 945
Cfr10I RCCGGY 2 cut(s) 368, 995
Cfr13I GGNCC 4 cut(s) 251, 252, 308, 980
Cfr42I CCGCGG 1 cut(s) 619
ClaI ATCGAT 1 cut(s) 285
CseI GACGC 1 cut(s) 46
Csp6I GTAC 4 cut(s) 196, 337, 438, 704
CspAI ACCGGT 1 cut(s) 368
CviAII CATG 5 cut(s) 45, 192, 278, 777, 1030
CviQI GTAC 4 cut(s) 196, 337, 438, 704
DdeI CTNAG 2 cut(s) 12, 482
DpnI GATC 4 cut(s) 50, 81, 710, 804
DpnII GATC 4 cut(s) 48, 79, 708, 802
DraI TTTAAA 1 cut(s) 1038
Eam1104I CTCTTC 2 cut(s) 438, 912
EarI CTCTTC 2 cut(s) 438, 912
Eco130I CCWWGG 1 cut(s) 44
Eco147I AGGCCT 1 cut(s) 449
Eco24I GRGCYC 1 cut(s) 255
Eco47I GGWCC 1 cut(s) 980
EcoO109I RGGNCCY 1 cut(s) 252
EcoRI GAATTC 1 cut(s) 342
EcoRII CCWGG 3 cut(s) 427, 699, 819
EcoT14I CCWWGG 1 cut(s) 44
EcoT38I GRGCYC 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 44
FaeI CATG 5 cut(s) 48, 195, 281, 780, 1033
FatI CATG 5 cut(s) 44, 191, 277, 776, 1029
FauI CCCGC 1 cut(s) 858
Fnu4HI GCNGC 4 cut(s) 161, 201, 797, 871
FokI GGATG 1 cut(s) 499
FriOI GRGCYC 1 cut(s) 255
Fsp4HI GCNGC 4 cut(s) 161, 201, 797, 871
FspBI CTAG 1 cut(s) 167
GluI GCNGC 4 cut(s) 161, 201, 797, 871
HaeIII GGCC 4 cut(s) 253, 273, 309, 449
HapII CCGG 4 cut(s) 298, 369, 800, 996
HgaI GACGC 1 cut(s) 46
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 5 cut(s) 48, 195, 281, 780, 1033
HincII GTYRAC 1 cut(s) 657
HindII GTYRAC 1 cut(s) 657
HindIII AAGCTT 2 cut(s) 878, 941
HinfI GANTC 6 cut(s) 67, 155, 352, 696, 736, 1042
HpaI GTTAAC 1 cut(s) 657
HpaII CCGG 4 cut(s) 298, 369, 800, 996
HphI GGTGA 2 cut(s) 358, 776
Hpy166II GTNNAC 3 cut(s) 267, 657, 718
Hpy188I TCNGA 3 cut(s) 149, 466, 541
Hpy188III TCNNGA 1 cut(s) 476
Hpy8I GTNNAC 3 cut(s) 267, 657, 718
Hpy99I CGWCG 5 cut(s) 37, 40, 56, 62, 664
HpyAV CCTTC 2 cut(s) 400, 902
HpyCH4III ACNGT 2 cut(s) 122, 593
HpyCH4IV ACGT 2 cut(s) 323, 659
HpyCH4V TGCA 6 cut(s) 186, 277, 691, 723, 742, 873
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpyF3I CTNAG 2 cut(s) 12, 482
HpySE526I ACGT 2 cut(s) 323, 659
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 5 cut(s) 48, 195, 281, 780, 1033
KspAI GTTAAC 1 cut(s) 657
KspI CCGCGG 1 cut(s) 619
Kzo9I GATC 4 cut(s) 48, 79, 708, 802
LmnI GCTCC 2 cut(s) 568, 864
Lsp1109I GCAGC 3 cut(s) 147, 783, 857
LweI GCATC 1 cut(s) 212
MaeI CTAG 1 cut(s) 167
MaeII ACGT 2 cut(s) 323, 659
MaeIII GTNAC 1 cut(s) 787
MalI GATC 4 cut(s) 50, 81, 710, 804
MboI GATC 4 cut(s) 48, 79, 708, 802
MboII GAAGA 9 cut(s) 28, 31, 34, 108, 455, 929, 941, 1024, 1075
MfeI CAATTG 1 cut(s) 783
MflI RGATCY 1 cut(s) 802
MhlI GDGCHC 2 cut(s) 255, 573
MluCI AATT 9 cut(s) 113, 302, 342, 380, 546, 600, 621, 783, 932
MlyI GAGTC 4 cut(s) 76, 164, 346, 745
MmeI TCCRAC 2 cut(s) 127, 444
MnlI CCTC 6 cut(s) 97, 439, 460, 578, 643, 1047
MseI TTAA 5 cut(s) 656, 815, 891, 1025, 1037
MspA1I CMGCKG 1 cut(s) 618
MspI CCGG 4 cut(s) 298, 369, 800, 996
MspR9I CCNGG 4 cut(s) 298, 429, 701, 821
MunI CAATTG 1 cut(s) 783
MvaI CCWGG 3 cut(s) 429, 701, 821
MvnI CGCG 1 cut(s) 618
MwoI GCNNNNNNNGC 1 cut(s) 37
NciI CCSGG 1 cut(s) 298
NcoI CCATGG 1 cut(s) 44
NdeII GATC 4 cut(s) 48, 79, 708, 802
NlaIII CATG 5 cut(s) 48, 195, 281, 780, 1033
NlaIV GGNNCC 2 cut(s) 253, 310
NmuCI GTSAC 1 cut(s) 787
PceI AGGCCT 1 cut(s) 449
PcsI WCGNNNNNNNCGW 2 cut(s) 57, 352
PfeI GAWTC 2 cut(s) 696, 1042
PflFI GACNNNGTC 1 cut(s) 56
PflMI CCANNNNNTGG 1 cut(s) 248
PinAI ACCGGT 1 cut(s) 368
PkrI GCNGC 4 cut(s) 162, 202, 798, 872
PleI GAGTC 4 cut(s) 75, 163, 346, 744
PpsI GAGTC 4 cut(s) 75, 163, 346, 744
PsiI TTATAA 1 cut(s) 329
Psp6I CCWGG 3 cut(s) 427, 699, 819
PspGI CCWGG 3 cut(s) 427, 699, 819
PspN4I GGNNCC 2 cut(s) 253, 310
PspOMI GGGCCC 1 cut(s) 251
PspPI GGNCC 4 cut(s) 251, 252, 308, 980
PsuI RGATCY 1 cut(s) 802
PsyI GACNNNGTC 1 cut(s) 56
RsaI GTAC 4 cut(s) 197, 338, 439, 705
RsaNI GTAC 4 cut(s) 196, 337, 438, 704
SacII CCGCGG 1 cut(s) 619
SaqAI TTAA 5 cut(s) 656, 815, 891, 1025, 1037
SatI GCNGC 4 cut(s) 161, 201, 797, 871
Sau3AI GATC 4 cut(s) 48, 79, 708, 802
Sau96I GGNCC 4 cut(s) 251, 252, 308, 980
SchI GAGTC 4 cut(s) 76, 164, 346, 745
ScrFI CCNGG 4 cut(s) 298, 429, 701, 821
SduI GDGCHC 2 cut(s) 255, 573
SfaNI GCATC 1 cut(s) 212
Sfr303I CCGCGG 1 cut(s) 619
SgrBI CCGCGG 1 cut(s) 619
SinI GGWCC 1 cut(s) 980
SmlI CTYRAG 3 cut(s) 419, 451, 634
SmoI CTYRAG 3 cut(s) 419, 451, 634
Sse9I AATT 9 cut(s) 113, 302, 342, 380, 546, 600, 621, 783, 932
SseBI AGGCCT 1 cut(s) 449
SsiI CCGC 4 cut(s) 201, 616, 618, 865
SspMI CTAG 1 cut(s) 167
StuI AGGCCT 1 cut(s) 449
StyD4I CCNGG 4 cut(s) 296, 427, 699, 819
StyI CCWWGG 1 cut(s) 44
TaaI ACNGT 2 cut(s) 122, 593
TaiI ACGT 2 cut(s) 326, 662
TaqI TCGA 4 cut(s) 51, 65, 94, 285
TasI AATT 9 cut(s) 113, 302, 342, 380, 546, 600, 621, 783, 932
TauI GCSGC 1 cut(s) 203
TfiI GAWTC 2 cut(s) 696, 1042
Tru1I TTAA 5 cut(s) 656, 815, 891, 1025, 1037
Tru9I TTAA 5 cut(s) 656, 815, 891, 1025, 1037
TscAI CASTG 2 cut(s) 274, 725
TseFI GTSAC 1 cut(s) 787
TseI GCWGC 3 cut(s) 160, 796, 870
Tsp45I GTSAC 1 cut(s) 787
TspDTI ATGAA 5 cut(s) 41, 294, 364, 696, 942
TspRI CASTG 2 cut(s) 274, 725
Tth111I GACNNNGTC 1 cut(s) 56
Van91I CCANNNNNTGG 1 cut(s) 248
VpaK11BI GGWCC 1 cut(s) 980
XapI RAATTY 3 cut(s) 302, 342, 600
XcmI CCANNNNNNNNNTGG 1 cut(s) 148
XspI CTAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.