RchiOBHm_Chr3g0460331

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000886
Physical Location & Seq
Reverse (-)
8464857 .. 8469582
4726 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42685

Sequence Viewer

Length: 1161 bp
ATGTTGAGAGCGAAGAAGAAGATGAAGCCATCGCCACCGCCGAGGAGCCATGGCGTGGTTTCGAATATGGAGAACACTGAGAAGGACCACGATCCATCTTTCAGTCGACGAAGATGGGAGGATTTAGACGAGGACTGTCTAGCAAATGTGTTTACAAAAGTTGGAATGGAGTCTTTGCTCTTGGCTGTTCCTTATGTATGCAAATCATGGTACGCAACTACTCTCAATCCTTTAAGCTGGAGGCTTCTCTCTTTTCCAGACTTTGAGCCTTATCCTCTGTTTACTGCTCCTTCTGATCATGATGTTAATGTTGTACTTGCGCCTGATGATATTAACATAGAAGAGGTTGAACCCAAGTCTTTTGGATCGTTTTACGATCAGTTTGTAGAAGACTATGGATTCGATAGGAGTCGTTTTTCGATCACAGCTTTTGTAAAAAATGTAGTGAATCGTAGCCATGGAAAGGCTATTTATGTCAAGCTACCTACATTTTGTACTGAGGAAGCGTTGAGATATGTCTCGGATGCTTGTCCGCAACTTAGGGGTTTTCGTTTTCCTGATGATTTAGCGATGTTCAAGCATTCTCGAATCATTCCGGAAGTTATTGGGAAATGGAAGTCGTTGAAGCACTTAAGTTTGGGAGGAAGCATGGCAGGAATTGCTATACAATACCACAGAAGTGGGGAATACATGTGTAAAGATTTCGAGGCGTTGTTGTCATTAATCAACTATGACAGTCCAAACAGCAGTACAAATTTGTATGATATCCTGGTGCAGGTTGGCATTCACTGCAAGAACCTCAAGAGTTTGCATATTTTTGATGCCCTTGTTGGTGAAGTTGAGGCATTGACAATTGCGACGACGCTGCCGGATCTTATGCACTTAACCCTGGGACAATCTCAAATTCAGCGAGATAGTCTTGTTATTCTCTTGAAGGGCTGCAAAAAGCTCATTAGCTTTCATCTTGGGTATTGTGATGGTTTTGAAGAGTGTGATGAAGAATTATTGAAGCTTGCTTCCCATATTAGCGACTTCTGGTATAAAGGTGGTCCAAATGATTTTACCGGCTTGAATGAGTTGAAGATGATTATTTTAACCATGTGTTTAAAGAATCAACTTTGGAGGAAAGGGAAGATTTTACTGGCAGAGTATTATCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

386

Amino Acids

44.03

Weight (kDa)

6.08

Isoelectric Point (pI)

54.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 766
AccB7I CCANNNNNTGG 1 cut(s) 55
AccI GTMKAC 1 cut(s) 106
AccIII TCCGGA 1 cut(s) 595
AciI CCGC 2 cut(s) 38, 533
AclWI GGATC 3 cut(s) 86, 373, 879
AcsI RAATTY 2 cut(s) 754, 903
AfaI GTAC 4 cut(s) 212, 315, 496, 751
AfiI CCNNNNNNNGG 3 cut(s) 55, 463, 775
AflII CTTAAG 1 cut(s) 631
AflIII ACRYGT 1 cut(s) 690
AgsI TTSAA 8 cut(s) 350, 577, 625, 934, 986, 1009, 1072, 1081
AjnI CCWGG 2 cut(s) 768, 888
AleI CACNNNNGTG 1 cut(s) 678
AluBI AGCT 6 cut(s) 237, 428, 481, 949, 957, 1012
AluI AGCT 6 cut(s) 237, 428, 481, 949, 957, 1012
Alw26I GTCTC 1 cut(s) 523
AlwI GGATC 3 cut(s) 86, 373, 879
Aor13HI TCCGGA 1 cut(s) 595
ApeKI GCWGC 2 cut(s) 865, 939
ApoI RAATTY 2 cut(s) 754, 903
ArsI GACNNNNNNTTYG 2 cut(s) 383, 415
AseI ATTAAT 1 cut(s) 722
AspLEI GCGC 1 cut(s) 322
AspS9I GGNCC 2 cut(s) 85, 1049
AsuHPI GGTGA 1 cut(s) 845
AsuII TTCGAA 1 cut(s) 62
AvaII GGWCC 2 cut(s) 85, 1049
BbsI GAAGAC 1 cut(s) 396
BbvI GCAGC 2 cut(s) 852, 926
BccI CCATC 4 cut(s) 37, 103, 108, 971
BcgI CGANNNNNNTGC 2 cut(s) 847, 881
BciT130I CCWGG 2 cut(s) 770, 890
BclI TGATCA 1 cut(s) 295
BcoDI GTCTC 1 cut(s) 523
BfaI CTAG 1 cut(s) 140
BfrI CTTAAG 1 cut(s) 631
BfuAI ACCTGC 1 cut(s) 766
BisI GCNGC 2 cut(s) 866, 940
BlsI GCNGC 2 cut(s) 867, 941
Bme1390I CCNGG 2 cut(s) 770, 890
Bme18I GGWCC 2 cut(s) 85, 1049
BmgT120I GGNCC 2 cut(s) 85, 1049
BmiI GGNNCC 1 cut(s) 47
BmrFI CCNGG 2 cut(s) 770, 890
BmsI GCATC 2 cut(s) 514, 811
BpiI GAAGAC 1 cut(s) 396
BpmI CTGGAG 1 cut(s) 259
Bpu14I TTCGAA 1 cut(s) 62
BpuEI CTTGAG 1 cut(s) 785
BsaJI CCNNGG 5 cut(s) 41, 49, 457, 888, 889
BsaWI WCCGGW 1 cut(s) 595
Bsc4I CCNNNNNNNGG 3 cut(s) 55, 463, 775
Bse118I RCCGGY 1 cut(s) 1064
Bse1I ACTGG 1 cut(s) 1146
BseAI TCCGGA 1 cut(s) 595
BseBI CCWGG 2 cut(s) 770, 890
BseDI CCNNGG 5 cut(s) 41, 49, 457, 888, 889
BseGI GGATG 1 cut(s) 529
BseLI CCNNNNNNNGG 3 cut(s) 55, 463, 775
BseMII CTCAG 2 cut(s) 69, 489
BseNI ACTGG 1 cut(s) 1146
BseRI GAGGAG 1 cut(s) 58
BseXI GCAGC 2 cut(s) 852, 926
BsgI GTGCAG 1 cut(s) 794
BsiSI CCGG 3 cut(s) 596, 869, 1065
BslFI GGGAC 1 cut(s) 906
BslI CCNNNNNNNGG 3 cut(s) 55, 463, 775
BsmAI GTCTC 1 cut(s) 523
BsmFI GGGAC 1 cut(s) 906
BsmI GAATGC 2 cut(s) 580, 783
Bsp119I TTCGAA 1 cut(s) 62
Bsp13I TCCGGA 1 cut(s) 595
Bsp143I GATC 6 cut(s) 91, 295, 365, 376, 420, 871
Bsp19I CCATGG 2 cut(s) 49, 457
BspACI CCGC 2 cut(s) 38, 533
BspCNI CTCAG 2 cut(s) 70, 490
BspEI TCCGGA 1 cut(s) 595
BspHI TCATGA 1 cut(s) 298
BspLI GGNNCC 1 cut(s) 47
BspMI ACCTGC 1 cut(s) 766
BspPI GGATC 3 cut(s) 86, 373, 879
BspT104I TTCGAA 1 cut(s) 62
BspTI CTTAAG 1 cut(s) 631
BsrFI RCCGGY 1 cut(s) 1064
BsrI ACTGG 1 cut(s) 1146
BssAI RCCGGY 1 cut(s) 1064
BssECI CCNNGG 5 cut(s) 41, 49, 457, 888, 889
BssMI GATC 6 cut(s) 91, 295, 365, 376, 420, 871
BssT1I CCWWGG 2 cut(s) 49, 457
Bst2UI CCWGG 2 cut(s) 770, 890
Bst4CI ACNGT 2 cut(s) 137, 737
Bst6I CTCTTC 2 cut(s) 336, 981
BstAFI CTTAAG 1 cut(s) 631
BstAPI GCANNNNNTGC 2 cut(s) 659, 789
BstBI TTCGAA 1 cut(s) 62
BstC8I GCNNGC 1 cut(s) 1014
BstDEI CTNAG 3 cut(s) 78, 498, 539
BstDSI CCRYGG 2 cut(s) 49, 457
BstENI CCTNNNNNAGG 1 cut(s) 773
BstF5I GGATG 1 cut(s) 529
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 6 cut(s) 94, 298, 368, 379, 423, 874
BstMAI GTCTC 1 cut(s) 523
BstMBI GATC 6 cut(s) 91, 295, 365, 376, 420, 871
BstMWI GCNNNNNNNGC 2 cut(s) 659, 789
BstNI CCWGG 2 cut(s) 770, 890
BstNSI RCATGY 1 cut(s) 694
BstSCI CCNGG 2 cut(s) 768, 888
BstV1I GCAGC 2 cut(s) 852, 926
BstV2I GAAGAC 1 cut(s) 396
BstX2I RGATCY 1 cut(s) 871
BstXI CCANNNNNNTGG 1 cut(s) 680
BstYI RGATCY 1 cut(s) 871
BtgI CCRYGG 2 cut(s) 49, 457
BtgZI GCGATG 2 cut(s) 15, 584
BtsCI GGATG 1 cut(s) 529
BtsI GCAGTG 1 cut(s) 787
BtsIMutI CAGTG 2 cut(s) 75, 787
BveI ACCTGC 1 cut(s) 766
Cac8I GCNNGC 1 cut(s) 1014
CciI TCATGA 1 cut(s) 298
CfoI GCGC 1 cut(s) 322
Cfr10I RCCGGY 1 cut(s) 1064
Cfr13I GGNCC 2 cut(s) 85, 1049
CseI GACGC 1 cut(s) 871
Csp6I GTAC 4 cut(s) 211, 314, 495, 750
CviAII CATG 7 cut(s) 50, 207, 299, 458, 649, 691, 1099
CviQI GTAC 4 cut(s) 211, 314, 495, 750
DdeI CTNAG 3 cut(s) 78, 498, 539
DpnI GATC 6 cut(s) 93, 297, 367, 378, 422, 873
DpnII GATC 6 cut(s) 91, 295, 365, 376, 420, 871
DraI TTTAAA 1 cut(s) 1107
Eam1104I CTCTTC 2 cut(s) 336, 981
EarI CTCTTC 2 cut(s) 336, 981
Eco130I CCWWGG 2 cut(s) 49, 457
Eco32I GATATC 1 cut(s) 766
Eco47I GGWCC 2 cut(s) 85, 1049
EcoNI CCTNNNNNAGG 1 cut(s) 773
EcoRII CCWGG 2 cut(s) 768, 888
EcoRV GATATC 1 cut(s) 766
EcoT14I CCWWGG 2 cut(s) 49, 457
ErhI CCWWGG 2 cut(s) 49, 457
FaeI CATG 7 cut(s) 53, 210, 302, 461, 652, 694, 1102
FaqI GGGAC 1 cut(s) 906
FatI CATG 7 cut(s) 49, 206, 298, 457, 648, 690, 1098
FbaI TGATCA 1 cut(s) 295
FblI GTMKAC 1 cut(s) 106
Fnu4HI GCNGC 2 cut(s) 866, 940
FokI GGATG 1 cut(s) 536
Fsp4HI GCNGC 2 cut(s) 866, 940
FspBI CTAG 1 cut(s) 140
GlaI GCGC 1 cut(s) 321
GluI GCNGC 2 cut(s) 866, 940
GsuI CTGGAG 1 cut(s) 259
HapII CCGG 3 cut(s) 596, 869, 1065
HgaI GACGC 1 cut(s) 871
HhaI GCGC 1 cut(s) 322
Hin1II CATG 7 cut(s) 53, 210, 302, 461, 652, 694, 1102
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HincII GTYRAC 1 cut(s) 107
HindII GTYRAC 1 cut(s) 107
HindIII AAGCTT 1 cut(s) 1010
HinfI GANTC 6 cut(s) 170, 399, 409, 448, 588, 1111
HpaII CCGG 3 cut(s) 596, 869, 1065
HphI GGTGA 1 cut(s) 845
Hpy166II GTNNAC 3 cut(s) 107, 153, 282
Hpy188I TCNGA 2 cut(s) 295, 523
Hpy188III TCNNGA 7 cut(s) 257, 299, 557, 585, 596, 802, 931
Hpy8I GTNNAC 3 cut(s) 107, 153, 282
Hpy99I CGWCG 3 cut(s) 111, 862, 865
HpyAV CCTTC 3 cut(s) 76, 300, 928
HpyCH4III ACNGT 2 cut(s) 137, 737
HpyCH4V TGCA 6 cut(s) 201, 775, 792, 811, 880, 942
HpyF10VI GCNNNNNNNGC 2 cut(s) 659, 789
HpyF3I CTNAG 3 cut(s) 78, 498, 539
Hsp92II CATG 7 cut(s) 53, 210, 302, 461, 652, 694, 1102
HspAI GCGC 1 cut(s) 320
Kpn2I TCCGGA 1 cut(s) 595
Ksp22I TGATCA 1 cut(s) 295
Kzo9I GATC 6 cut(s) 91, 295, 365, 376, 420, 871
LmnI GCTCC 2 cut(s) 45, 292
Lsp1109I GCAGC 2 cut(s) 852, 926
LweI GCATC 2 cut(s) 514, 811
MaeI CTAG 1 cut(s) 140
MalI GATC 6 cut(s) 93, 297, 367, 378, 422, 873
MboI GATC 6 cut(s) 91, 295, 365, 376, 420, 871
MfeI CAATTG 1 cut(s) 852
MflI RGATCY 1 cut(s) 871
MluCI AATT 5 cut(s) 657, 754, 852, 903, 1001
MlyI GAGTC 2 cut(s) 179, 418
MmeI TCCRAC 1 cut(s) 142
MroI TCCGGA 1 cut(s) 595
MseI TTAA 8 cut(s) 233, 306, 333, 632, 722, 884, 1094, 1106
MslI CAYNNNNRTG 1 cut(s) 678
MspCI CTTAAG 1 cut(s) 631
MspI CCGG 3 cut(s) 596, 869, 1065
MspR9I CCNGG 2 cut(s) 770, 890
MunI CAATTG 1 cut(s) 852
Mva1269I GAATGC 2 cut(s) 580, 783
MvaI CCWGG 2 cut(s) 770, 890
MwoI GCNNNNNNNGC 2 cut(s) 659, 789
NcoI CCATGG 2 cut(s) 49, 457
NdeII GATC 6 cut(s) 91, 295, 365, 376, 420, 871
NlaIII CATG 7 cut(s) 53, 210, 302, 461, 652, 694, 1102
NlaIV GGNNCC 1 cut(s) 47
NmeAIII GCCGAG 1 cut(s) 66
NspI RCATGY 1 cut(s) 694
NspV TTCGAA 1 cut(s) 62
OliI CACNNNNGTG 1 cut(s) 678
PagI TCATGA 1 cut(s) 298
PasI CCCWGGG 1 cut(s) 889
PciI ACATGT 1 cut(s) 690
PcsI WCGNNNNNNNCGW 1 cut(s) 38
PctI GAATGC 2 cut(s) 580, 783
PfeI GAWTC 4 cut(s) 399, 448, 588, 1111
PflMI CCANNNNNTGG 1 cut(s) 55
PkrI GCNGC 2 cut(s) 867, 941
PleI GAGTC 2 cut(s) 178, 417
PpsI GAGTC 2 cut(s) 178, 417
PscI ACATGT 1 cut(s) 690
PshBI ATTAAT 1 cut(s) 722
Psp6I CCWGG 2 cut(s) 768, 888
PspGI CCWGG 2 cut(s) 768, 888
PspN4I GGNNCC 1 cut(s) 47
PspPI GGNCC 2 cut(s) 85, 1049
PsuI RGATCY 1 cut(s) 871
RsaI GTAC 4 cut(s) 212, 315, 496, 751
RsaNI GTAC 4 cut(s) 211, 314, 495, 750
RseI CAYNNNNRTG 1 cut(s) 678
SalI GTCGAC 1 cut(s) 105
SaqAI TTAA 8 cut(s) 233, 306, 333, 632, 722, 884, 1094, 1106
SatI GCNGC 2 cut(s) 866, 940
Sau3AI GATC 6 cut(s) 91, 295, 365, 376, 420, 871
Sau96I GGNCC 2 cut(s) 85, 1049
SchI GAGTC 2 cut(s) 179, 418
ScrFI CCNGG 2 cut(s) 770, 890
SfaNI GCATC 2 cut(s) 514, 811
SfuI TTCGAA 1 cut(s) 62
SinI GGWCC 2 cut(s) 85, 1049
SmiMI CAYNNNNRTG 1 cut(s) 678
SmlI CTYRAG 2 cut(s) 631, 800
SmoI CTYRAG 2 cut(s) 631, 800
Sse9I AATT 5 cut(s) 657, 754, 852, 903, 1001
SsiI CCGC 2 cut(s) 38, 533
SspMI CTAG 1 cut(s) 140
StyD4I CCNGG 2 cut(s) 768, 888
StyI CCWWGG 2 cut(s) 49, 457
TaaI ACNGT 2 cut(s) 137, 737
TaqI TCGA 6 cut(s) 62, 106, 402, 419, 586, 705
TasI AATT 5 cut(s) 657, 754, 852, 903, 1001
TatI WGTACW 3 cut(s) 313, 494, 749
TfiI GAWTC 4 cut(s) 399, 448, 588, 1111
Tru1I TTAA 8 cut(s) 233, 306, 333, 632, 722, 884, 1094, 1106
Tru9I TTAA 8 cut(s) 233, 306, 333, 632, 722, 884, 1094, 1106
TscAI CASTG 2 cut(s) 82, 794
TseI GCWGC 2 cut(s) 865, 939
TspDTI ATGAA 3 cut(s) 38, 950, 1011
TspRI CASTG 2 cut(s) 82, 794
Van91I CCANNNNNTGG 1 cut(s) 55
Vha464I CTTAAG 1 cut(s) 631
VpaK11BI GGWCC 2 cut(s) 85, 1049
VspI ATTAAT 1 cut(s) 722
XagI CCTNNNNNAGG 1 cut(s) 773
XapI RAATTY 2 cut(s) 754, 903
XceI RCATGY 1 cut(s) 694
XmiI GTMKAC 1 cut(s) 106
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.