FvH4_6g09680

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000886
Physical Location & Seq
Reverse (-)
5760602 .. 5761756
1155 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g09680.t1

Sequence Viewer

Length: 942 bp
ATGTGTTCGCCAAAGTCGGGAATGGAGTCTCTCCTTCTAGCTCTCCCTTTCGTCTGTAAATCATGGCACGCTGCATCTCTCAATCCCTTATGCTGGGAAATTCTCCATTTTCCCGAGTTTGAGCCCTATCCTCTGTTCACTACCGTTGATGATACCAATGTTGAGCCCAAGAGCTTTGGCCCATTCTACAATAAGTTTGTGGAGGATTACAAGATGGATAGGACTCGGTTTTCGATCACCGGTTTTGTGAAATTGGTCGTCGATCGTAGCAAGGGGAAGGCTGTTGAGCTGAAGCTGCCTCAGTTTTGTACCGAAGAAGCGTTGCGTTATGCTGCGGATGGTTGTCCTGGGATTAGGTATCTGCATTTTACGGACGACTTGGTGTTTTTCAAGCATTCGCAGATTCTGCCGGAGGTGATCGGAAAGTGGAAGCTTCTGGAGCATTTGACTTTGGGTGGGAACATGGAGAATATTATGAGGCAGTTTCAAGTGAAGGGTGGGGAGCATTTGAGTAGGGATTTCGAGGAGAAGTTGTTGGTGTTGTTGGATAATGTACATCCGATTAGGAATAAGAATTTGCATGAGATTCTGGTGCAGTGTCGCATTGAGGGGAATACTCTTGTCACGTTGTTGCAGGGTTGCAAGAAGCTTTGGCGGTTCGATTTGTGGAATTTTGAAGGGTTTGTTTTGGATGATGATGAAATGCTGAAGCTTGGGTCTCATGTTAAGGAGTTTAGGTGGACTCGTGCTATGACTGGTTATAAGCGCTTCCATGTGTTGAAGATGATGATTATTTTAACCAGGGCGAAGCAGGATCAGATTTGGAGGAAAAGGGATGTGATTCCGATTTTGGTGGAGCTGTTCGCAGTGATGCACACTGTTCTTTCAAGTGCCGTCAATTCTTTCAAGCTGCTGTTTATGAAGACTGGAAGATTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

314

Amino Acids

36.57

Weight (kDa)

8.58

Isoelectric Point (pI)

39.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 762
AciI CCGC 2 cut(s) 335, 655
AclWI GGATC 1 cut(s) 822
AcsI RAATTY 3 cut(s) 99, 574, 670
AcuI CTGAAG 2 cut(s) 311, 728
AfaI GTAC 2 cut(s) 310, 555
AfeI AGCGCT 1 cut(s) 767
AfiI CCNNNNNNNGG 2 cut(s) 17, 93
AgeI ACCGGT 1 cut(s) 239
AgsI TTSAA 6 cut(s) 391, 488, 677, 781, 888, 907
AjnI CCWGG 2 cut(s) 346, 800
AluBI AGCT 9 cut(s) 41, 174, 289, 295, 433, 649, 712, 859, 910
AluI AGCT 9 cut(s) 41, 174, 289, 295, 433, 649, 712, 859, 910
Alw26I GTCTC 2 cut(s) 33, 723
AlwI GGATC 1 cut(s) 822
AlwNI CAGNNNCTG 1 cut(s) 406
Ama87I CYCGRG 1 cut(s) 113
Aor51HI AGCGCT 1 cut(s) 767
AoxI GGCC 1 cut(s) 178
ApeKI GCWGC 4 cut(s) 71, 295, 332, 910
ApoI RAATTY 3 cut(s) 99, 574, 670
ArsI GACNNNNNNTTYG 2 cut(s) 214, 246
AsiGI ACCGGT 1 cut(s) 239
AspLEI GCGC 1 cut(s) 768
AspS9I GGNCC 1 cut(s) 179
AsuHPI GGTGA 2 cut(s) 229, 427
AvaI CYCGRG 1 cut(s) 113
BaeI ACNNNNGTAYC 2 cut(s) 144, 177
BanII GRGCYC 2 cut(s) 126, 168
BauI CACGAG 1 cut(s) 744
BbsI GAAGAC 1 cut(s) 929
BbvI GCAGC 4 cut(s) 58, 282, 319, 897
BccI CCATC 2 cut(s) 208, 332
BceAI ACGGC 1 cut(s) 878
BciT130I CCWGG 2 cut(s) 348, 802
BcoDI GTCTC 2 cut(s) 33, 723
BfaI CTAG 1 cut(s) 38
BfoI RGCGCY 1 cut(s) 769
BisI GCNGC 4 cut(s) 72, 296, 333, 911
BlsI GCNGC 4 cut(s) 73, 297, 334, 912
Bme1390I CCNGG 2 cut(s) 348, 802
BmeT110I CYCGRG 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 179
BmrFI CCNGG 2 cut(s) 348, 802
BmsI GCATC 2 cut(s) 83, 861
BpiI GAAGAC 1 cut(s) 929
BpmI CTGGAG 1 cut(s) 458
BsaI GGTCTC 1 cut(s) 723
BsaJI CCNNGG 2 cut(s) 347, 801
BsaWI WCCGGW 1 cut(s) 239
BsaXI ACNNNNNCTCC 4 cut(s) 518, 548, 722, 752
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 93
Bse118I RCCGGY 1 cut(s) 239
Bse1I ACTGG 2 cut(s) 760, 931
BseBI CCWGG 2 cut(s) 348, 802
BseDI CCNNGG 2 cut(s) 347, 801
BseGI GGATG 4 cut(s) 343, 556, 697, 841
BseLI CCNNNNNNNGG 2 cut(s) 17, 93
BseMII CTCAG 1 cut(s) 314
BseNI ACTGG 2 cut(s) 760, 931
BseRI GAGGAG 1 cut(s) 539
BseXI GCAGC 4 cut(s) 58, 282, 319, 897
BseYI CCCAGC 1 cut(s) 93
BsgI GTGCAG 1 cut(s) 614
Bsh1285I CGRYCG 1 cut(s) 265
BshFI GGCC 1 cut(s) 180
BshTI ACCGGT 1 cut(s) 239
BsiEI CGRYCG 1 cut(s) 265
BsiHKCI CYCGRG 1 cut(s) 113
BsiSI CCGG 2 cut(s) 240, 410
BslI CCNNNNNNNGG 2 cut(s) 17, 93
BsmAI GTCTC 2 cut(s) 33, 723
BsmI GAATGC 1 cut(s) 394
BsnI GGCC 1 cut(s) 180
Bso31I GGTCTC 1 cut(s) 723
BsoBI CYCGRG 1 cut(s) 113
Bsp1286I GDGCHC 2 cut(s) 126, 168
Bsp1407I TGTACA 1 cut(s) 553
Bsp143I GATC 4 cut(s) 234, 262, 417, 814
BspACI CCGC 2 cut(s) 335, 655
BspANI GGCC 1 cut(s) 180
BspCNI CTCAG 1 cut(s) 313
BspPI GGATC 1 cut(s) 822
BspTNI GGTCTC 1 cut(s) 723
BsrFI RCCGGY 1 cut(s) 239
BsrGI TGTACA 1 cut(s) 553
BsrI ACTGG 2 cut(s) 760, 931
BssAI RCCGGY 1 cut(s) 239
BssECI CCNNGG 2 cut(s) 347, 801
BssMI GATC 4 cut(s) 234, 262, 417, 814
BssSI CACGAG 1 cut(s) 744
Bst2BI CACGAG 1 cut(s) 744
Bst2UI CCWGG 2 cut(s) 348, 802
Bst4CI ACNGT 2 cut(s) 145, 880
BstAPI GCANNNNNTGC 1 cut(s) 406
BstAUI TGTACA 1 cut(s) 553
BstC8I GCNNGC 1 cut(s) 69
BstDEI CTNAG 1 cut(s) 300
BstF5I GGATG 4 cut(s) 343, 556, 697, 841
BstH2I RGCGCY 1 cut(s) 769
BstHHI GCGC 1 cut(s) 768
BstKTI GATC 4 cut(s) 237, 265, 420, 817
BstMAI GTCTC 2 cut(s) 33, 723
BstMBI GATC 4 cut(s) 234, 262, 417, 814
BstMCI CGRYCG 1 cut(s) 265
BstMWI GCNNNNNNNGC 3 cut(s) 295, 406, 439
BstNI CCWGG 2 cut(s) 348, 802
BstSCI CCNGG 2 cut(s) 346, 800
BstV1I GCAGC 4 cut(s) 58, 282, 319, 897
BstV2I GAAGAC 1 cut(s) 929
BsuRI GGCC 1 cut(s) 180
BtsCI GGATG 4 cut(s) 343, 556, 697, 841
BtsI GCAGTG 2 cut(s) 602, 873
BtsIMutI CAGTG 3 cut(s) 602, 873, 876
Cac8I GCNNGC 1 cut(s) 69
CaiI CAGNNNCTG 1 cut(s) 406
CfoI GCGC 1 cut(s) 768
Cfr10I RCCGGY 1 cut(s) 239
Cfr13I GGNCC 1 cut(s) 179
Csp6I GTAC 2 cut(s) 309, 554
CspAI ACCGGT 1 cut(s) 239
CviAII CATG 5 cut(s) 63, 463, 581, 722, 773
CviQI GTAC 2 cut(s) 309, 554
DdeI CTNAG 1 cut(s) 300
DpnI GATC 4 cut(s) 236, 264, 419, 816
DpnII GATC 4 cut(s) 234, 262, 417, 814
Eco24I GRGCYC 2 cut(s) 126, 168
Eco31I GGTCTC 1 cut(s) 723
Eco47III AGCGCT 1 cut(s) 767
Eco57I CTGAAG 2 cut(s) 311, 728
Eco88I CYCGRG 1 cut(s) 113
EcoRII CCWGG 2 cut(s) 346, 800
EcoT38I GRGCYC 2 cut(s) 126, 168
FaeI CATG 5 cut(s) 66, 466, 584, 725, 776
FatI CATG 5 cut(s) 62, 462, 580, 721, 772
Fnu4HI GCNGC 4 cut(s) 72, 296, 333, 911
FokI GGATG 4 cut(s) 350, 543, 704, 848
FriOI GRGCYC 2 cut(s) 126, 168
Fsp4HI GCNGC 4 cut(s) 72, 296, 333, 911
FspBI CTAG 1 cut(s) 38
GlaI GCGC 1 cut(s) 767
GluI GCNGC 4 cut(s) 72, 296, 333, 911
GsaI CCCAGC 1 cut(s) 97
GsuI CTGGAG 1 cut(s) 458
HaeII RGCGCY 1 cut(s) 769
HaeIII GGCC 1 cut(s) 180
HapII CCGG 2 cut(s) 240, 410
HhaI GCGC 1 cut(s) 768
Hin1II CATG 5 cut(s) 66, 466, 584, 725, 776
Hin6I GCGC 1 cut(s) 766
HinP1I GCGC 1 cut(s) 766
HindIII AAGCTT 3 cut(s) 431, 647, 710
HinfI GANTC 6 cut(s) 26, 223, 403, 586, 742, 841
HpaII CCGG 2 cut(s) 240, 410
HphI GGTGA 2 cut(s) 229, 427
Hpy166II GTNNAC 2 cut(s) 138, 741
Hpy188I TCNGA 4 cut(s) 422, 561, 819, 846
Hpy188III TCNNGA 3 cut(s) 18, 113, 437
Hpy8I GTNNAC 2 cut(s) 138, 741
Hpy99I CGWCG 1 cut(s) 263
HpyAV CCTTC 4 cut(s) 44, 271, 487, 671
HpyCH4III ACNGT 2 cut(s) 145, 880
HpyCH4IV ACGT 1 cut(s) 626
HpyCH4V TGCA 7 cut(s) 74, 364, 580, 595, 634, 642, 874
HpyF10VI GCNNNNNNNGC 3 cut(s) 295, 406, 439
HpyF3I CTNAG 1 cut(s) 300
HpySE526I ACGT 1 cut(s) 626
Hsp92II CATG 5 cut(s) 66, 466, 584, 725, 776
HspAI GCGC 1 cut(s) 766
Kzo9I GATC 4 cut(s) 234, 262, 417, 814
LmnI GCTCC 3 cut(s) 439, 502, 856
Lsp1109I GCAGC 4 cut(s) 58, 282, 319, 897
LweI GCATC 2 cut(s) 83, 861
MaeI CTAG 1 cut(s) 38
MaeII ACGT 1 cut(s) 626
MaeIII GTNAC 1 cut(s) 622
MalI GATC 4 cut(s) 236, 264, 419, 816
MboI GATC 4 cut(s) 234, 262, 417, 814
MboII GAAGA 4 cut(s) 326, 793, 934, 942
MhlI GDGCHC 2 cut(s) 126, 168
MluCI AATT 5 cut(s) 99, 251, 574, 670, 898
MlyI GAGTC 3 cut(s) 35, 217, 736
MmeI TCCRAC 1 cut(s) 525
MnlI CCTC 8 cut(s) 141, 196, 309, 406, 471, 517, 601, 819
MseI TTAA 2 cut(s) 726, 797
MspI CCGG 2 cut(s) 240, 410
MspR9I CCNGG 2 cut(s) 348, 802
Mva1269I GAATGC 1 cut(s) 394
MvaI CCWGG 2 cut(s) 348, 802
MwoI GCNNNNNNNGC 3 cut(s) 295, 406, 439
NdeII GATC 4 cut(s) 234, 262, 417, 814
NlaIII CATG 5 cut(s) 66, 466, 584, 725, 776
NmuCI GTSAC 1 cut(s) 622
PctI GAATGC 1 cut(s) 394
PfeI GAWTC 3 cut(s) 403, 586, 841
PinAI ACCGGT 1 cut(s) 239
PkrI GCNGC 4 cut(s) 73, 297, 334, 912
Ple19I CGATCG 1 cut(s) 265
PleI GAGTC 3 cut(s) 34, 217, 736
PpsI GAGTC 3 cut(s) 34, 217, 736
PsiI TTATAA 1 cut(s) 762
Psp6I CCWGG 2 cut(s) 346, 800
PspFI CCCAGC 1 cut(s) 93
PspGI CCWGG 2 cut(s) 346, 800
PspPI GGNCC 1 cut(s) 179
PstNI CAGNNNCTG 1 cut(s) 406
PvuI CGATCG 1 cut(s) 265
RsaI GTAC 2 cut(s) 310, 555
RsaNI GTAC 2 cut(s) 309, 554
SaqAI TTAA 2 cut(s) 726, 797
SatI GCNGC 4 cut(s) 72, 296, 333, 911
Sau3AI GATC 4 cut(s) 234, 262, 417, 814
Sau96I GGNCC 1 cut(s) 179
SchI GAGTC 3 cut(s) 35, 217, 736
ScrFI CCNGG 2 cut(s) 348, 802
SduI GDGCHC 2 cut(s) 126, 168
SfaNI GCATC 2 cut(s) 83, 861
Sse9I AATT 5 cut(s) 99, 251, 574, 670, 898
SsiI CCGC 2 cut(s) 335, 655
SspI AATATT 1 cut(s) 472
SspMI CTAG 1 cut(s) 38
StyD4I CCNGG 2 cut(s) 346, 800
TaaI ACNGT 2 cut(s) 145, 880
TaiI ACGT 1 cut(s) 629
TaqI TCGA 4 cut(s) 233, 261, 522, 660
TasI AATT 5 cut(s) 99, 251, 574, 670, 898
TatI WGTACW 1 cut(s) 553
TfiI GAWTC 3 cut(s) 403, 586, 841
Tru1I TTAA 2 cut(s) 726, 797
Tru9I TTAA 2 cut(s) 726, 797
TscAI CASTG 3 cut(s) 602, 873, 883
TseFI GTSAC 1 cut(s) 622
TseI GCWGC 4 cut(s) 71, 295, 332, 910
Tsp45I GTSAC 1 cut(s) 622
TspDTI ATGAA 2 cut(s) 714, 935
TspGWI ACGGA 1 cut(s) 386
TspRI CASTG 3 cut(s) 602, 873, 883
XapI RAATTY 3 cut(s) 99, 574, 670
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.