Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000886

Physical Location & Seq

Genomic Coordinates Reverse (-)

32790927 .. 32791472

Gene Structure 546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g38380.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGTCATCGGACAACGTCGTGTTGAAGAAGGCGAGACTGGTCCAACAAGAAGCACAGACTGAGAAAGAGGAGGAGCGAAGAAGATGGGAGGAGATGGACACAAATTGCTTAGCAAATGCGTTCAGCAAAGCTGGAATGGAGTCACTCCTTTTGGCAGTCCCTTTTGTCTGTAAGTCCTGGTACAAAGCTAGCCTCAGTCCTTTATGCTGGACAAGTCTTTCCTTTCCGGATTATAGACCTTCTCCTTTGTTTGTTAATACCGTTGAAGAAATCGAAACGATTCCTCGGAGTTTCGGTTTGTTTTATGATAAGTTTGTAGACGAATATGGAATCGACAAGAGTCGGTTTTCGATCACTGCTTTTGTTAAGTTTATAGTTGATCGTAGCAAAGGGAAGGCCACTCAACTCAAGCTACCCATGTACAGTACAGAAGCAACTCTTAGATATGTTTCAGACGCGTGTCCTCTGCTCAAAGAGTTCTCGTTTGAGGATGATTTGGTCATGTTCAAGCATTCTCAGATTCTCCCTGAAGTGATTGGGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 ubiquitin

Protein Analysis

182

Amino Acids

20.85

Weight (kDa)

5.6

Isoelectric Point (pI)

57.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000886)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g05260 FvH4_3g05270 FvH4_3g09690 FvH4_3g38380 FvH4_3g39340 FvH4_3g39340 FvH4_6g09400 FvH4_6g09680 FvH4_6g09690
rosa_chinensis	RchiOBHm_Chr3g0460331 RchiOBHm_Chr3g0476661 RchiOBHm_Chr5g0014451 RchiOBHm_Chr6g0308401 RchiOBHm_Chr7g0215881
rosa_laevigata	RLG00000001978 RLG00000010644 RLG00000012354 RLG00000012356 RLG00000012358 RLG00000016486 RLG00000025021 RLG00000025022 RLG00000025023 RLG00000032111
rosa_multiflora	Rmu_co8233111.1_g000001 Rmu_co8485739.1_g000001 Rmu_sc0000449.1_g000008 Rmu_sc0000449.1_g000009 Rmu_sc0000449.1_g000010 Rmu_sc0001356.1_g000007 Rmu_sc0003583.1_g000005 Rmu_sc0008241.1_g000015 Rmu_sc0010030.1_g000005
rosa_roxburghii	Rroxscaffold_1G00062120 Rroxscaffold_6G00405110 Rroxscaffold_6G00419610 Rroxscaffold_6G00419620 Rroxscaffold_6G00419630
rosa_rugosa	Rorug03G0156300 Rorug06G0366500
rosa_samantha	Rh2BG091300 Rh2CG093900 Rh3AG099500 Rh3AG099600 Rh3BG103500 Rh3BG103600 Rh3BG239000 Rh3CG105100 Rh3CG105200 Rh3CG105300 Rh3CG233000 Rh3CG233100 Rh3DG104900 Rh3DG105000 Rh3DG232900 Rh5AG113300 Rh5BG110000 Rh5CG121800 Rh5DG109100 Rh6AG476000 Rh6BG290200 Rh6BG290500 Rh6BG316800 Rh6BG486300 Rh6CG491500
rosa_wichuraiana	Rw5G009830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	318
AccII	CGCG	1 cut(s)	458
AccIII	TCCGGA	1 cut(s)	226
AfaI	GTAC	3 cut(s)	182, 422, 427
AflIII	ACRYGT	1 cut(s)	456
AgsI	TTSAA	3 cut(s)	25, 266, 508
AjnI	CCWGG	1 cut(s)	176
AluBI	AGCT	3 cut(s)	131, 188, 412
AluI	AGCT	3 cut(s)	131, 188, 412
Alw26I	GTCTC	1 cut(s)	28
Aor13HI	TCCGGA	1 cut(s)	226
AoxI	GGCC	1 cut(s)	396
Asp700I	GAANNNNTTC	1 cut(s)	279
AspS9I	GGNCC	1 cut(s)	40
AsuNHI	GCTAGC	1 cut(s)	188
AvaII	GGWCC	1 cut(s)	40
BccI	CCATC	2 cut(s)	78, 88
BciT130I	CCWGG	1 cut(s)	178
BcoDI	GTCTC	1 cut(s)	28
BfaI	CTAG	1 cut(s)	189
BlpI	GCTNAGC	1 cut(s)	109
Bme1390I	CCNGG	1 cut(s)	178
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	178
BmtI	GCTAGC	1 cut(s)	192
BoxI	GACNNNNGTC	2 cut(s)	339, 459
Bpu1102I	GCTNAGC	1 cut(s)	109
BpuEI	CTTGAG	1 cut(s)	392
BsaJI	CCNNGG	1 cut(s)	284
BsaWI	WCCGGW	1 cut(s)	226
BsaXI	ACNNNNNCTCC	2 cut(s)	280, 310
Bse1I	ACTGG	1 cut(s)	42
BseAI	TCCGGA	1 cut(s)	226
BseBI	CCWGG	1 cut(s)	178
BseDI	CCNNGG	1 cut(s)	284
BseGI	GGATG	1 cut(s)	496
BseMII	CTCAG	3 cut(s)	51, 208, 530
BseNI	ACTGG	1 cut(s)	42
BseRI	GAGGAG	3 cut(s)	83, 86, 104
Bsh1236I	CGCG	1 cut(s)	458
BshFI	GGCC	1 cut(s)	398
BsiSI	CCGG	1 cut(s)	227
BslFI	GGGAC	1 cut(s)	143
BsmAI	GTCTC	1 cut(s)	28
BsmFI	GGGAC	1 cut(s)	143
BsmI	GAATGC	1 cut(s)	511
BsnI	GGCC	1 cut(s)	398
Bsp13I	TCCGGA	1 cut(s)	226
Bsp1407I	TGTACA	1 cut(s)	420
Bsp143I	GATC	2 cut(s)	351, 379
Bsp1720I	GCTNAGC	1 cut(s)	109
BspANI	GGCC	1 cut(s)	398
BspCNI	CTCAG	3 cut(s)	52, 207, 529
BspEI	TCCGGA	1 cut(s)	226
BspFNI	CGCG	1 cut(s)	458
BspOI	GCTAGC	1 cut(s)	192
BsrGI	TGTACA	1 cut(s)	420
BsrI	ACTGG	1 cut(s)	42
BssECI	CCNNGG	1 cut(s)	284
BssMI	GATC	2 cut(s)	351, 379
Bst2UI	CCWGG	1 cut(s)	178
Bst4CI	ACNGT	2 cut(s)	262, 425
BstAUI	TGTACA	1 cut(s)	420
BstC8I	GCNNGC	1 cut(s)	190
BstDEI	CTNAG	5 cut(s)	60, 109, 194, 440, 516
BstF5I	GGATG	1 cut(s)	496
BstFNI	CGCG	1 cut(s)	458
BstKTI	GATC	2 cut(s)	354, 382
BstMAI	GTCTC	1 cut(s)	28
BstMBI	GATC	2 cut(s)	351, 379
BstNI	CCWGG	1 cut(s)	178
BstPAI	GACNNNNGTC	2 cut(s)	339, 459
BstSCI	CCNGG	1 cut(s)	176
BstUI	CGCG	1 cut(s)	458
BsuRI	GGCC	1 cut(s)	398
BtsCI	GGATG	1 cut(s)	496
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	1 cut(s)	354
Cac8I	GCNNGC	1 cut(s)	190
Cfr13I	GGNCC	1 cut(s)	40
CseI	GACGC	1 cut(s)	464
Csp6I	GTAC	3 cut(s)	181, 421, 426
CviAII	CATG	2 cut(s)	418, 502
CviJI	RGCY	5 cut(s)	131, 188, 192, 398, 412
CviKI_1	RGCY	5 cut(s)	131, 188, 192, 398, 412
CviQI	GTAC	3 cut(s)	181, 421, 426
DdeI	CTNAG	5 cut(s)	60, 109, 194, 440, 516
DpnI	GATC	2 cut(s)	353, 381
DpnII	GATC	2 cut(s)	351, 379
Eco47I	GGWCC	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	176
FaeI	CATG	2 cut(s)	421, 505
FaiI	YATR	8 cut(s)	205, 234, 306, 327, 374, 419, 447, 503
FalI	AAGNNNNNCTT	2 cut(s)	423, 455
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	2 cut(s)	417, 501
FblI	GTMKAC	1 cut(s)	318
FokI	GGATG	1 cut(s)	503
FspBI	CTAG	1 cut(s)	189
HaeIII	GGCC	1 cut(s)	398
HapII	CCGG	1 cut(s)	227
HgaI	GACGC	1 cut(s)	464
Hin1II	CATG	2 cut(s)	421, 505
HinfI	GANTC	5 cut(s)	140, 280, 330, 340, 520
HpaII	CCGG	1 cut(s)	227
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188I	TCNGA	4 cut(s)	10, 288, 454, 519
Hpy188III	TCNNGA	1 cut(s)	227
Hpy8I	GTNNAC	1 cut(s)	319
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	3 cut(s)	22, 249, 388
HpyCH4III	ACNGT	2 cut(s)	262, 425
HpyCH4IV	ACGT	1 cut(s)	15
HpyF3I	CTNAG	5 cut(s)	60, 109, 194, 440, 516
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	2 cut(s)	421, 505
Kpn2I	TCCGGA	1 cut(s)	226
Kzo9I	GATC	2 cut(s)	351, 379
LmnI	GCTCC	1 cut(s)	73
LpnPI	CCDG	7 cut(s)	23, 117, 163, 190, 193, 240, 540
MaeI	CTAG	1 cut(s)	189
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	1 cut(s)	141
MalI	GATC	2 cut(s)	353, 381
MboI	GATC	2 cut(s)	351, 379
MboII	GAAGA	4 cut(s)	37, 90, 93, 278
MluCI	AATT	1 cut(s)	103
MluI	ACGCGT	1 cut(s)	456
MlyI	GAGTC	2 cut(s)	149, 349
MmeI	TCCRAC	1 cut(s)	67
MnlI	CCTC	7 cut(s)	61, 64, 82, 203, 294, 474, 481
MroI	TCCGGA	1 cut(s)	226
MroXI	GAANNNNTTC	1 cut(s)	279
MseI	TTAA	2 cut(s)	255, 366
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	1 cut(s)	178
Mva1269I	GAATGC	1 cut(s)	511
MvaI	CCWGG	1 cut(s)	178
MvnI	CGCG	1 cut(s)	458
NdeII	GATC	2 cut(s)	351, 379
NheI	GCTAGC	1 cut(s)	188
NlaIII	CATG	2 cut(s)	421, 505
NmuCI	GTSAC	1 cut(s)	141
PctI	GAATGC	1 cut(s)	511
PdmI	GAANNNNTTC	1 cut(s)	279
PfeI	GAWTC	3 cut(s)	280, 330, 520
PflFI	GACNNNGTC	1 cut(s)	14
PleI	GAGTC	2 cut(s)	148, 348
PpsI	GAGTC	2 cut(s)	148, 348
PshAI	GACNNNNGTC	2 cut(s)	339, 459
Psp6I	CCWGG	1 cut(s)	176
PspGI	CCWGG	1 cut(s)	176
PspPI	GGNCC	1 cut(s)	40
PsyI	GACNNNGTC	1 cut(s)	14
RsaI	GTAC	3 cut(s)	182, 422, 427
RsaNI	GTAC	3 cut(s)	181, 421, 426
SaqAI	TTAA	2 cut(s)	255, 366
Sau3AI	GATC	2 cut(s)	351, 379
Sau96I	GGNCC	1 cut(s)	40
SchI	GAGTC	2 cut(s)	149, 349
ScrFI	CCNGG	1 cut(s)	178
SetI	ASST	5 cut(s)	18, 133, 190, 241, 414
SinI	GGWCC	1 cut(s)	40
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
Sse9I	AATT	1 cut(s)	103
SspMI	CTAG	1 cut(s)	189
StyD4I	CCNGG	1 cut(s)	176
TaaI	ACNGT	2 cut(s)	262, 425
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	3 cut(s)	273, 333, 350
TasI	AATT	1 cut(s)	103
TatI	WGTACW	2 cut(s)	420, 425
TfiI	GAWTC	3 cut(s)	280, 330, 520
Tru1I	TTAA	2 cut(s)	255, 366
Tru9I	TTAA	2 cut(s)	255, 366
TscAI	CASTG	1 cut(s)	361
TseFI	GTSAC	1 cut(s)	141
Tsp45I	GTSAC	1 cut(s)	141
TspRI	CASTG	1 cut(s)	361
Tth111I	GACNNNGTC	1 cut(s)	14
VpaK11BI	GGWCC	1 cut(s)	40
XmiI	GTMKAC	1 cut(s)	318
XmnI	GAANNNNTTC	1 cut(s)	279
XspI	CTAG	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.