Rh3DG104900

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000886
Physical Location & Seq
Reverse (-)
8443115 .. 8444826
1712 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG104900.1

Sequence Viewer

Length: 1221 bp
ATGTTATTTAAACTTTGGGCCTACCCAATAAACAGCCCATTTGAAGAGGCCCATTTATACGTGGGGATATATTTCCATATATCCATTTCCAGTTGTGTTTTTTCAGCTCAGAAAATCACGATGTTGAGACCTGAGAAGAAGCTGAAGCCGTCGTCAGATCCGTCGTCGCCACCATGGATCGACGGCGTCGTTTCGAGTCACCGCCGCGATCAATCTCTCACTCGAAGATGGGAGGATTTAGAATTGGACTGTTTAGCAAATGTGTTTGCCAAAGTCGGAATGGAGTCGCTGCTTCTAGCTCTCCCTTTTGTCTGCAAATCATGGTACGCCGCATCTCTCAATCCCTTATGCTGGAAGTTTCTCTCTTTCCCAGATTTTGAGCCCCATCCTTTGTTCACTGGTATGCATGAAATCGATTTTGAAACCCGGAAATTTGGCCCCTTTTATGATACGTTTATAAAAAAGTACCGAATTCGTAGGACTCGTTTCTCCATCACCGGTTTCATAAAATTGGTTGTCAGTCGTAGCAATGGGAAGGCTACTTATCTCAAGCTACCTGGATTTTGTACCGAAGAGGCGTTGAGATATGTGTCGGAGGCGTGTCCTGAACTTAGGATGTTGTATTTGTGTGATGATTTAGTGATTTTCAAGCATACCCAAATCATTTCTGAACTAATTGGGAAGTGGAAGTATTTGGAGCACTTGACTTTGGGCGGAAACTGTGGGGAAATTTTGAAGCAATACCGCGGAATTGGGGATTACTTGAGTAAGAACTTTGAGGCGTTAACGTCGTTCAAATACAATAGCAATGAAACTTTGCACAGAATCCTGGTACAGATCGCCGTTCACTGCAAGCATTTTAGGAGTCTGCATATCTTTGAAACCCTTGTCGGTGCAGTTGAAGCATTGGCAATTGTGACTATGCTACCGGATCTCACGCACTTAACCCTGGCACAATCTTGTATTGAACGAGATACTCTTTTCACGCTCCTGCGGGGCTGCAAGAAGCTTTGCTCATTTAATCTCTGGTATTGCGAAGGTTTTGAAGAGTGTGATGAAGAATTATTGAAGCTTGCTTCCCATATTAGCGAGTTCTGGTATAAAGGTGGTCCAAATGATTTTACCGGCTTGCATGAGTTGAAGATGATTATTTTAACCATGTGTTTAAAGAATCAACTTTGGAGGAAAGGGAAGATTTTACTGGCAGAGTATTATCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

406

Amino Acids

47.11

Weight (kDa)

8.26

Isoelectric Point (pI)

47.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 458
AccII CGCG 2 cut(s) 207, 747
AciI CCGC 7 cut(s) 202, 205, 330, 714, 745, 747, 994
AclWI GGATC 3 cut(s) 152, 185, 939
AcsI RAATTY 3 cut(s) 431, 471, 729
AcuI CTGAAG 1 cut(s) 164
AcyI GRCGYC 1 cut(s) 186
AfaI GTAC 4 cut(s) 326, 467, 568, 834
AfiI CCNNNNNNNGG 1 cut(s) 351
AgeI ACCGGT 1 cut(s) 497
AjnI CCWGG 3 cut(s) 556, 828, 948
AluBI AGCT 6 cut(s) 107, 142, 299, 553, 1009, 1072
AluI AGCT 6 cut(s) 107, 142, 299, 553, 1009, 1072
Alw21I GWGCWC 1 cut(s) 702
Alw26I GTCTC 1 cut(s) 121
AlwI GGATC 3 cut(s) 152, 185, 939
AoxI GGCC 3 cut(s) 18, 48, 436
ApeKI GCWGC 2 cut(s) 289, 999
ApoI RAATTY 3 cut(s) 431, 471, 729
AsiGI ACCGGT 1 cut(s) 497
AspS9I GGNCC 4 cut(s) 18, 49, 437, 1109
AsuC2I CCSGG 1 cut(s) 427
AsuHPI GGTGA 2 cut(s) 191, 487
AvaII GGWCC 1 cut(s) 1109
BanII GRGCYC 1 cut(s) 384
Bbv12I GWGCWC 1 cut(s) 702
BbvI GCAGC 2 cut(s) 276, 986
BccI CCATC 3 cut(s) 222, 393, 500
BceAI ACGGC 3 cut(s) 133, 199, 827
BciT130I CCWGG 3 cut(s) 558, 830, 950
BcnI CCSGG 1 cut(s) 427
BcoDI GTCTC 1 cut(s) 121
BfaI CTAG 1 cut(s) 296
BisI GCNGC 4 cut(s) 205, 290, 330, 1000
BlsI GCNGC 4 cut(s) 206, 291, 331, 1001
Bme1390I CCNGG 4 cut(s) 427, 558, 830, 950
Bme18I GGWCC 1 cut(s) 1109
BmgT120I GGNCC 4 cut(s) 18, 49, 437, 1109
BmiI GGNNCC 1 cut(s) 439
BmrFI CCNGG 4 cut(s) 427, 558, 830, 950
BmsI GCATC 1 cut(s) 341
BpuEI CTTGAG 2 cut(s) 533, 784
BpuMI CCSGG 1 cut(s) 427
Bsa29I ATCGAT 1 cut(s) 414
BsaAI YACGTR 1 cut(s) 61
BsaHI GRCGYC 1 cut(s) 186
BsaI GGTCTC 1 cut(s) 121
BsaJI CCNNGG 3 cut(s) 173, 745, 948
BsaWI WCCGGW 2 cut(s) 497, 928
Bsc4I CCNNNNNNNGG 1 cut(s) 351
Bse118I RCCGGY 2 cut(s) 497, 1124
Bse1I ACTGG 3 cut(s) 90, 403, 1206
Bse3DI GCAATG 2 cut(s) 535, 814
BseBI CCWGG 3 cut(s) 558, 830, 950
BseCI ATCGAT 1 cut(s) 414
BseDI CCNNGG 3 cut(s) 173, 745, 948
BseGI GGATG 2 cut(s) 385, 621
BseLI CCNNNNNNNGG 1 cut(s) 351
BseMI GCAATG 2 cut(s) 535, 814
BseMII CTCAG 2 cut(s) 122, 123
BseNI ACTGG 3 cut(s) 90, 403, 1206
BseXI GCAGC 2 cut(s) 276, 986
BsgI GTGCAG 1 cut(s) 915
Bsh1236I CGCG 2 cut(s) 207, 747
BshFI GGCC 3 cut(s) 20, 50, 438
BshTI ACCGGT 1 cut(s) 497
BshVI ATCGAT 1 cut(s) 414
BsiHKAI GWGCWC 1 cut(s) 702
BsiSI CCGG 4 cut(s) 427, 498, 929, 1125
BslI CCNNNNNNNGG 1 cut(s) 351
BsmAI GTCTC 1 cut(s) 121
BsnI GGCC 3 cut(s) 20, 50, 438
Bso31I GGTCTC 1 cut(s) 121
Bsp1286I GDGCHC 2 cut(s) 384, 702
Bsp143I GATC 5 cut(s) 157, 177, 208, 837, 931
Bsp19I CCATGG 1 cut(s) 173
BspACI CCGC 7 cut(s) 202, 205, 330, 714, 745, 747, 994
BspANI GGCC 3 cut(s) 20, 50, 438
BspCNI CTCAG 2 cut(s) 121, 124
BspDI ATCGAT 1 cut(s) 414
BspFNI CGCG 2 cut(s) 207, 747
BspLI GGNNCC 1 cut(s) 439
BspPI GGATC 3 cut(s) 152, 185, 939
BspTNI GGTCTC 1 cut(s) 121
BsrDI GCAATG 2 cut(s) 535, 814
BsrFI RCCGGY 2 cut(s) 497, 1124
BsrI ACTGG 3 cut(s) 90, 403, 1206
BssAI RCCGGY 2 cut(s) 497, 1124
BssECI CCNNGG 3 cut(s) 173, 745, 948
BssMI GATC 5 cut(s) 157, 177, 208, 837, 931
BssNI GRCGYC 1 cut(s) 186
BssT1I CCWWGG 1 cut(s) 173
Bst2UI CCWGG 3 cut(s) 558, 830, 950
Bst4CI ACNGT 2 cut(s) 251, 722
Bst6I CTCTTC 3 cut(s) 39, 567, 1041
BstACI GRCGYC 1 cut(s) 186
BstBAI YACGTR 1 cut(s) 61
BstC8I GCNNGC 3 cut(s) 854, 1074, 1130
BstDEI CTNAG 3 cut(s) 108, 132, 611
BstDSI CCRYGG 2 cut(s) 173, 745
BstF5I GGATG 2 cut(s) 385, 621
BstFNI CGCG 2 cut(s) 207, 747
BstKTI GATC 5 cut(s) 160, 180, 211, 840, 934
BstMAI GTCTC 1 cut(s) 121
BstMBI GATC 5 cut(s) 157, 177, 208, 837, 931
BstMWI GCNNNNNNNGC 1 cut(s) 902
BstNI CCWGG 3 cut(s) 558, 830, 950
BstSCI CCNGG 4 cut(s) 425, 556, 828, 948
BstUI CGCG 2 cut(s) 207, 747
BstV1I GCAGC 2 cut(s) 276, 986
BstX2I RGATCY 2 cut(s) 157, 931
BstYI RGATCY 2 cut(s) 157, 931
Bsu15I ATCGAT 1 cut(s) 414
BsuRI GGCC 3 cut(s) 20, 50, 438
BsuTUI ATCGAT 1 cut(s) 414
BtgI CCRYGG 2 cut(s) 173, 745
BtsCI GGATG 2 cut(s) 385, 621
BtsI GCAGTG 1 cut(s) 847
BtsIMutI CAGTG 2 cut(s) 396, 847
Cac8I GCNNGC 3 cut(s) 854, 1074, 1130
Cfr10I RCCGGY 2 cut(s) 497, 1124
Cfr13I GGNCC 4 cut(s) 18, 49, 437, 1109
Cfr42I CCGCGG 1 cut(s) 748
ClaI ATCGAT 1 cut(s) 414
CseI GACGC 1 cut(s) 175
Csp6I GTAC 4 cut(s) 325, 466, 567, 833
CspAI ACCGGT 1 cut(s) 497
CviAII CATG 5 cut(s) 174, 321, 407, 1133, 1159
CviQI GTAC 4 cut(s) 325, 466, 567, 833
DdeI CTNAG 3 cut(s) 108, 132, 611
DpnI GATC 5 cut(s) 159, 179, 210, 839, 933
DpnII GATC 5 cut(s) 157, 177, 208, 837, 931
DraI TTTAAA 2 cut(s) 10, 1167
Eam1104I CTCTTC 3 cut(s) 39, 567, 1041
EarI CTCTTC 3 cut(s) 39, 567, 1041
EciI GGCGGA 1 cut(s) 729
Eco130I CCWWGG 1 cut(s) 173
Eco24I GRGCYC 1 cut(s) 384
Eco31I GGTCTC 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 1109
Eco57I CTGAAG 1 cut(s) 164
EcoRI GAATTC 1 cut(s) 471
EcoRII CCWGG 3 cut(s) 556, 828, 948
EcoT14I CCWWGG 1 cut(s) 173
EcoT22I ATGCAT 1 cut(s) 408
EcoT38I GRGCYC 1 cut(s) 384
ErhI CCWWGG 1 cut(s) 173
FaeI CATG 5 cut(s) 177, 324, 410, 1136, 1162
FatI CATG 5 cut(s) 173, 320, 406, 1132, 1158
FauI CCCGC 1 cut(s) 987
Fnu4HI GCNGC 4 cut(s) 205, 290, 330, 1000
FokI GGATG 2 cut(s) 372, 628
FriOI GRGCYC 1 cut(s) 384
Fsp4HI GCNGC 4 cut(s) 205, 290, 330, 1000
FspBI CTAG 1 cut(s) 296
GluI GCNGC 4 cut(s) 205, 290, 330, 1000
HaeIII GGCC 3 cut(s) 20, 50, 438
HapII CCGG 4 cut(s) 427, 498, 929, 1125
HgaI GACGC 1 cut(s) 175
Hin1I GRCGYC 1 cut(s) 186
Hin1II CATG 5 cut(s) 177, 324, 410, 1136, 1162
HincII GTYRAC 1 cut(s) 786
HindII GTYRAC 1 cut(s) 786
HindIII AAGCTT 2 cut(s) 1007, 1070
HinfI GANTC 6 cut(s) 196, 284, 481, 825, 865, 1171
HpaI GTTAAC 1 cut(s) 786
HpaII CCGG 4 cut(s) 427, 498, 929, 1125
HphI GGTGA 2 cut(s) 191, 487
Hpy166II GTNNAC 3 cut(s) 396, 786, 847
Hpy188I TCNGA 5 cut(s) 111, 157, 278, 595, 670
Hpy188III TCNNGA 2 cut(s) 118, 605
Hpy8I GTNNAC 3 cut(s) 396, 786, 847
Hpy99I CGWCG 6 cut(s) 154, 166, 169, 185, 191, 793
HpyAV CCTTC 2 cut(s) 529, 1031
HpyCH4III ACNGT 2 cut(s) 251, 722
HpyCH4IV ACGT 3 cut(s) 60, 452, 788
HpyCH4V TGCA 8 cut(s) 315, 406, 820, 852, 871, 896, 1002, 1132
HpyF10VI GCNNNNNNNGC 1 cut(s) 902
HpyF3I CTNAG 3 cut(s) 108, 132, 611
HpySE526I ACGT 3 cut(s) 60, 452, 788
Hsp92I GRCGYC 1 cut(s) 186
Hsp92II CATG 5 cut(s) 177, 324, 410, 1136, 1162
KspAI GTTAAC 1 cut(s) 786
KspI CCGCGG 1 cut(s) 748
Kzo9I GATC 5 cut(s) 157, 177, 208, 837, 931
LmnI GCTCC 2 cut(s) 697, 993
Lsp1109I GCAGC 2 cut(s) 276, 986
LweI GCATC 1 cut(s) 341
MaeI CTAG 1 cut(s) 296
MaeII ACGT 3 cut(s) 60, 452, 788
MaeIII GTNAC 2 cut(s) 197, 916
MalI GATC 5 cut(s) 159, 179, 210, 839, 933
MboI GATC 5 cut(s) 157, 177, 208, 837, 931
MboII GAAGA 8 cut(s) 56, 148, 237, 584, 1058, 1070, 1153, 1204
MfeI CAATTG 1 cut(s) 912
MflI RGATCY 2 cut(s) 157, 931
MhlI GDGCHC 2 cut(s) 384, 702
MluCI AATT 9 cut(s) 242, 431, 471, 509, 675, 729, 750, 912, 1061
MlyI GAGTC 4 cut(s) 205, 293, 475, 874
MmeI TCCRAC 2 cut(s) 256, 573
MnlI CCTC 6 cut(s) 40, 226, 568, 589, 772, 1176
Mph1103I ATGCAT 1 cut(s) 408
MseI TTAA 6 cut(s) 9, 785, 944, 1020, 1154, 1166
MslI CAYNNNNRTG 1 cut(s) 401
MspA1I CMGCKG 1 cut(s) 747
MspI CCGG 4 cut(s) 427, 498, 929, 1125
MspR9I CCNGG 4 cut(s) 427, 558, 830, 950
MunI CAATTG 1 cut(s) 912
MvaI CCWGG 3 cut(s) 558, 830, 950
MvnI CGCG 2 cut(s) 207, 747
MwoI GCNNNNNNNGC 1 cut(s) 902
NciI CCSGG 1 cut(s) 427
NcoI CCATGG 1 cut(s) 173
NdeII GATC 5 cut(s) 157, 177, 208, 837, 931
NlaIII CATG 5 cut(s) 177, 324, 410, 1136, 1162
NlaIV GGNNCC 1 cut(s) 439
NmuCI GTSAC 2 cut(s) 197, 916
NsiI ATGCAT 1 cut(s) 408
PcsI WCGNNNNNNNCGW 3 cut(s) 158, 186, 481
PfeI GAWTC 2 cut(s) 825, 1171
PflFI GACNNNGTC 1 cut(s) 185
PinAI ACCGGT 1 cut(s) 497
PkrI GCNGC 4 cut(s) 206, 291, 331, 1001
PleI GAGTC 4 cut(s) 204, 292, 475, 873
PpsI GAGTC 4 cut(s) 204, 292, 475, 873
Ppu21I YACGTR 1 cut(s) 61
PsiI TTATAA 1 cut(s) 458
Psp6I CCWGG 3 cut(s) 556, 828, 948
PspGI CCWGG 3 cut(s) 556, 828, 948
PspN4I GGNNCC 1 cut(s) 439
PspPI GGNCC 4 cut(s) 18, 49, 437, 1109
PsuI RGATCY 2 cut(s) 157, 931
PsyI GACNNNGTC 1 cut(s) 185
RsaI GTAC 4 cut(s) 326, 467, 568, 834
RsaNI GTAC 4 cut(s) 325, 466, 567, 833
RseI CAYNNNNRTG 1 cut(s) 401
SacII CCGCGG 1 cut(s) 748
SaqAI TTAA 6 cut(s) 9, 785, 944, 1020, 1154, 1166
SatI GCNGC 4 cut(s) 205, 290, 330, 1000
Sau3AI GATC 5 cut(s) 157, 177, 208, 837, 931
Sau96I GGNCC 4 cut(s) 18, 49, 437, 1109
SchI GAGTC 4 cut(s) 205, 293, 475, 874
ScrFI CCNGG 4 cut(s) 427, 558, 830, 950
SduI GDGCHC 2 cut(s) 384, 702
SfaNI GCATC 1 cut(s) 341
Sfr303I CCGCGG 1 cut(s) 748
SgrBI CCGCGG 1 cut(s) 748
SinI GGWCC 1 cut(s) 1109
SmiMI CAYNNNNRTG 1 cut(s) 401
SmlI CTYRAG 2 cut(s) 548, 763
SmoI CTYRAG 2 cut(s) 548, 763
Sse9I AATT 9 cut(s) 242, 431, 471, 509, 675, 729, 750, 912, 1061
SsiI CCGC 7 cut(s) 202, 205, 330, 714, 745, 747, 994
SspMI CTAG 1 cut(s) 296
StyD4I CCNGG 4 cut(s) 425, 556, 828, 948
StyI CCWWGG 1 cut(s) 173
TaaI ACNGT 2 cut(s) 251, 722
TaiI ACGT 3 cut(s) 63, 455, 791
TaqI TCGA 4 cut(s) 180, 194, 223, 414
TasI AATT 9 cut(s) 242, 431, 471, 509, 675, 729, 750, 912, 1061
TauI GCSGC 2 cut(s) 207, 332
TfiI GAWTC 2 cut(s) 825, 1171
Tru1I TTAA 6 cut(s) 9, 785, 944, 1020, 1154, 1166
Tru9I TTAA 6 cut(s) 9, 785, 944, 1020, 1154, 1166
TscAI CASTG 2 cut(s) 403, 854
TseFI GTSAC 2 cut(s) 197, 916
TseI GCWGC 2 cut(s) 289, 999
Tsp45I GTSAC 2 cut(s) 197, 916
TspDTI ATGAA 4 cut(s) 423, 493, 825, 1071
TspGWI ACGGA 1 cut(s) 150
TspRI CASTG 2 cut(s) 403, 854
Tth111I GACNNNGTC 1 cut(s) 185
VpaK11BI GGWCC 1 cut(s) 1109
XapI RAATTY 3 cut(s) 431, 471, 729
XcmI CCANNNNNNNNNTGG 1 cut(s) 277
XspI CTAG 1 cut(s) 296
Zsp2I ATGCAT 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.