Rorug03G0156300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000886
Physical Location & Seq
Reverse (-)
12878727 .. 12882154
3428 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0156300.1

Sequence Viewer

Length: 1047 bp
ATGGGTACAACAGAGAGATCAAGAAAGAAGGTTCAACTATGGAAGAAAGCTGCTGTCCATTTTGCTTTGTGTTTTGTTATGGGATTCTTTACAGGCTTTGCTCCAACGTTTAAACCTTCCATCTTGTCTAAACCTGCTGTGAGTTCATCAAAGAAAATAGAGTTTTCGCCTCAACCAGTAGAACCGCCGCAACAAGTCGCAAATTTCAATAGAAGTTTGATAGCGGAAGCAGAAAATTTGGCAATGGCAGCATCCTCCCCTCCAAATTCTGAAGAAACCTACTTCGAATCCGAAAGGAGGATGTCAGAAGATGAAGAAGAAGAAGTGAAAGAACCCAATTTGACACCAAGAAGGTTTATTATCATAGTCACACCGACAAGCACCAAAAACCCACTAAAATGTGTGTTTCTGAGAAGATTGGCAAATACCATAAAGTTGGTTCCTCAGCCATTGTTGTGGATTGTGGTGGAAGGGAAGACCGAGTCGAATGAGGTTTCTGAAGTGCTTAGGAAAACAGGTGTTATGTATAGGCATTTGGTTTTCAGAGAGAACTTCACAGATACTGAGGCTGAAATGGATCATCAGAGGAATGTTGCTCTTAAGCACATTGAGCAGCACAAGCTTAGTGGGATTGTTCACTTTGCTGGGCTTTCCAATGTTTATGATCTTGGCTTCTTTGATCAGCTCAGAGAAATTGAAGTGTTTGGGACATGGCCAATGGCGCTACTAGCAGCAAACAAGAAAAAAGTGATCATTGAAGGGCCTGTATGTGATTCTTCACAAGTGATAGGATGGCATATCCTAAGGAAAATGAACAATACTGATCAAACAGATGATACTAATAGACTTCGCATTCATATTTCAAGCTTTGCATTCAATAGCTCAATTCTTTGGGACCCTGAAAGATGGGGTCGCACTTCATCACTTCAAAGCACCTCTCAGAATTCAATGAAATTTGTAAAGCAAGTGGTTCTTGAAGATGAGACAAAACTAAAGGGAATCCCACCAGAAGACTGCTCAAAGATCATGCTTTGGTCTCTTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

348

Amino Acids

39.72

Weight (kDa)

8.25

Isoelectric Point (pI)

64.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_43 PF03360 140 - 347 8.1e-60 Glycosyltransferase family 43
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 142
AciI CCGC 3 cut(s) 185, 188, 224
AclI AACGTT 1 cut(s) 107
AclWI GGATC 1 cut(s) 585
AcoI YGGCCR 1 cut(s) 713
AcsI RAATTY 5 cut(s) 202, 235, 265, 943, 953
AcuI CTGAAG 2 cut(s) 291, 519
AfaI GTAC 1 cut(s) 7
AfiI CCNNNNNNNGG 1 cut(s) 297
AflII CTTAAG 1 cut(s) 599
AgsI TTSAA 9 cut(s) 35, 208, 698, 758, 864, 877, 929, 948, 977
AluBI AGCT 5 cut(s) 50, 622, 685, 867, 882
AluI AGCT 5 cut(s) 50, 622, 685, 867, 882
Alw26I GTCTC 2 cut(s) 977, 1041
AlwI GGATC 1 cut(s) 585
AlwNI CAGNNNCTG 1 cut(s) 563
AoxI GGCC 2 cut(s) 713, 761
ApeKI GCWGC 4 cut(s) 50, 248, 613, 731
ApoI RAATTY 5 cut(s) 202, 235, 265, 943, 953
AspLEI GCGC 1 cut(s) 724
AspS9I GGNCC 2 cut(s) 761, 895
AsuII TTCGAA 1 cut(s) 285
AvaII GGWCC 1 cut(s) 895
AxyI CCTNAGG 1 cut(s) 803
BalI TGGCCA 1 cut(s) 715
BbsI GAAGAC 2 cut(s) 482, 1017
BbvCI CCTCAGC 1 cut(s) 444
BbvI GCAGC 4 cut(s) 37, 260, 625, 743
BccI CCATC 3 cut(s) 128, 786, 900
BclI TGATCA 3 cut(s) 679, 750, 823
BcoDI GTCTC 2 cut(s) 977, 1041
BfaI CTAG 1 cut(s) 728
BfoI RGCGCY 1 cut(s) 725
BfrI CTTAAG 1 cut(s) 599
BfuAI ACCTGC 1 cut(s) 142
BisI GCNGC 5 cut(s) 51, 188, 249, 614, 732
BlsI GCNGC 5 cut(s) 52, 189, 250, 615, 733
Bme18I GGWCC 1 cut(s) 895
BmgT120I GGNCC 2 cut(s) 761, 895
BmiI GGNNCC 3 cut(s) 441, 896, 897
BmsI GCATC 1 cut(s) 260
BpiI GAAGAC 2 cut(s) 482, 1017
Bpu10I CCTNAGC 2 cut(s) 444, 506
Bpu14I TTCGAA 1 cut(s) 285
BsaI GGTCTC 1 cut(s) 1041
Bsc4I CCNNNNNNNGG 1 cut(s) 297
Bse1I ACTGG 1 cut(s) 176
Bse21I CCTNAGG 1 cut(s) 803
Bse3DI GCAATG 1 cut(s) 249
BseGI GGATG 3 cut(s) 251, 306, 797
BseLI CCNNNNNNNGG 1 cut(s) 297
BseMI GCAATG 1 cut(s) 249
BseMII CTCAG 5 cut(s) 401, 458, 555, 700, 953
BseNI ACTGG 1 cut(s) 176
BseXI GCAGC 4 cut(s) 37, 260, 625, 743
BseYI CCCAGC 1 cut(s) 644
BshFI GGCC 2 cut(s) 715, 763
BslFI GGGAC 2 cut(s) 721, 908
BslI CCNNNNNNNGG 1 cut(s) 297
BsmAI GTCTC 2 cut(s) 977, 1041
BsmFI GGGAC 2 cut(s) 721, 908
BsmI GAATGC 2 cut(s) 852, 872
BsnI GGCC 2 cut(s) 715, 763
Bso31I GGTCTC 1 cut(s) 1041
Bsp119I TTCGAA 1 cut(s) 285
Bsp143I GATC 7 cut(s) 17, 577, 664, 679, 750, 823, 1023
BspACI CCGC 3 cut(s) 185, 188, 224
BspANI GGCC 2 cut(s) 715, 763
BspCNI CTCAG 5 cut(s) 402, 457, 556, 699, 952
BspLI GGNNCC 3 cut(s) 441, 896, 897
BspMI ACCTGC 1 cut(s) 142
BspPI GGATC 1 cut(s) 585
BspT104I TTCGAA 1 cut(s) 285
BspTI CTTAAG 1 cut(s) 599
BspTNI GGTCTC 1 cut(s) 1041
BsrDI GCAATG 1 cut(s) 249
BsrI ACTGG 1 cut(s) 176
BssMI GATC 7 cut(s) 17, 577, 664, 679, 750, 823, 1023
Bst6I CTCTTC 1 cut(s) 1044
BstAFI CTTAAG 1 cut(s) 599
BstBI TTCGAA 1 cut(s) 285
BstDEI CTNAG 8 cut(s) 410, 444, 506, 564, 623, 686, 803, 939
BstF5I GGATG 3 cut(s) 251, 306, 797
BstH2I RGCGCY 1 cut(s) 725
BstHHI GCGC 1 cut(s) 724
BstKTI GATC 7 cut(s) 20, 580, 667, 682, 753, 826, 1026
BstMAI GTCTC 2 cut(s) 977, 1041
BstMBI GATC 7 cut(s) 17, 577, 664, 679, 750, 823, 1023
BstMWI GCNNNNNNNGC 5 cut(s) 248, 610, 619, 721, 728
BstV1I GCAGC 4 cut(s) 37, 260, 625, 743
BstV2I GAAGAC 2 cut(s) 482, 1017
BstXI CCANNNNNNTGG 2 cut(s) 436, 456
Bsu36I CCTNAGG 1 cut(s) 803
BsuRI GGCC 2 cut(s) 715, 763
BtsCI GGATG 3 cut(s) 251, 306, 797
BveI ACCTGC 1 cut(s) 142
CaiI CAGNNNCTG 1 cut(s) 563
CfoI GCGC 1 cut(s) 724
Cfr13I GGNCC 2 cut(s) 761, 895
Csp6I GTAC 1 cut(s) 6
CspCI CAANNNNNGTGG 2 cut(s) 607, 642
CviAII CATG 2 cut(s) 711, 1027
CviQI GTAC 1 cut(s) 6
DdeI CTNAG 8 cut(s) 410, 444, 506, 564, 623, 686, 803, 939
DpnI GATC 7 cut(s) 19, 579, 666, 681, 752, 825, 1025
DpnII GATC 7 cut(s) 17, 577, 664, 679, 750, 823, 1023
DraI TTTAAA 1 cut(s) 112
EaeI YGGCCR 1 cut(s) 713
Eam1104I CTCTTC 1 cut(s) 1044
EarI CTCTTC 1 cut(s) 1044
Eco31I GGTCTC 1 cut(s) 1041
Eco47I GGWCC 1 cut(s) 895
Eco57I CTGAAG 2 cut(s) 291, 519
Eco81I CCTNAGG 1 cut(s) 803
EcoO109I RGGNCCY 2 cut(s) 761, 895
EcoRI GAATTC 1 cut(s) 943
FaeI CATG 2 cut(s) 714, 1030
FalI AAGNNNNNCTT 2 cut(s) 957, 989
FaqI GGGAC 2 cut(s) 721, 908
FatI CATG 2 cut(s) 710, 1026
FbaI TGATCA 3 cut(s) 679, 750, 823
Fnu4HI GCNGC 5 cut(s) 51, 188, 249, 614, 732
FokI GGATG 3 cut(s) 238, 313, 804
Fsp4HI GCNGC 5 cut(s) 51, 188, 249, 614, 732
FspBI CTAG 1 cut(s) 728
GlaI GCGC 1 cut(s) 723
GluI GCNGC 5 cut(s) 51, 188, 249, 614, 732
GsaI CCCAGC 1 cut(s) 648
HaeII RGCGCY 1 cut(s) 725
HaeIII GGCC 2 cut(s) 715, 763
HhaI GCGC 1 cut(s) 724
Hin1II CATG 2 cut(s) 714, 1030
Hin6I GCGC 1 cut(s) 722
HinP1I GCGC 1 cut(s) 722
HindIII AAGCTT 2 cut(s) 620, 865
HinfI GANTC 5 cut(s) 84, 287, 482, 773, 999
Hpy166II GTNNAC 1 cut(s) 637
Hpy188I TCNGA 9 cut(s) 271, 292, 307, 411, 499, 545, 585, 689, 942
Hpy188III TCNNGA 2 cut(s) 21, 974
Hpy8I GTNNAC 1 cut(s) 637
HpyAV CCTTC 5 cut(s) 22, 126, 345, 464, 752
HpyCH4IV ACGT 1 cut(s) 107
HpyCH4V TGCA 1 cut(s) 872
HpyF10VI GCNNNNNNNGC 5 cut(s) 248, 610, 619, 721, 728
HpyF3I CTNAG 8 cut(s) 410, 444, 506, 564, 623, 686, 803, 939
HpySE526I ACGT 1 cut(s) 107
Hsp92II CATG 2 cut(s) 714, 1030
HspAI GCGC 1 cut(s) 722
KflI GGGWCCC 1 cut(s) 895
Ksp22I TGATCA 3 cut(s) 679, 750, 823
Kzo9I GATC 7 cut(s) 17, 577, 664, 679, 750, 823, 1023
LmnI GCTCC 1 cut(s) 106
LpnPI CCDG 8 cut(s) 78, 147, 189, 501, 630, 777, 912, 1020
Lsp1109I GCAGC 4 cut(s) 37, 260, 625, 743
LweI GCATC 1 cut(s) 260
MaeI CTAG 1 cut(s) 728
MaeII ACGT 1 cut(s) 107
MaeIII GTNAC 1 cut(s) 367
MalI GATC 7 cut(s) 19, 579, 666, 681, 752, 825, 1025
MboI GATC 7 cut(s) 17, 577, 664, 679, 750, 823, 1023
MlsI TGGCCA 1 cut(s) 715
MluCI AATT 8 cut(s) 202, 235, 265, 337, 693, 885, 943, 953
MluNI TGGCCA 1 cut(s) 715
MlyI GAGTC 1 cut(s) 491
MmeI TCCRAC 1 cut(s) 128
MnlI CCTC 9 cut(s) 180, 265, 270, 291, 453, 484, 559, 579, 946
Mox20I TGGCCA 1 cut(s) 715
MscI TGGCCA 1 cut(s) 715
MseI TTAA 3 cut(s) 111, 600, 1045
MslI CAYNNNNRTG 2 cut(s) 397, 454
Msp20I TGGCCA 1 cut(s) 715
MspCI CTTAAG 1 cut(s) 599
MssI GTTTAAAC 1 cut(s) 112
Mva1269I GAATGC 2 cut(s) 852, 872
MwoI GCNNNNNNNGC 5 cut(s) 248, 610, 619, 721, 728
NdeII GATC 7 cut(s) 17, 577, 664, 679, 750, 823, 1023
NlaIII CATG 2 cut(s) 714, 1030
NlaIV GGNNCC 3 cut(s) 441, 896, 897
NmuCI GTSAC 1 cut(s) 367
NspV TTCGAA 1 cut(s) 285
PctI GAATGC 2 cut(s) 852, 872
PfeI GAWTC 4 cut(s) 84, 287, 773, 999
PflFI GACNNNGTC 1 cut(s) 481
PkrI GCNGC 5 cut(s) 52, 189, 250, 615, 733
PleI GAGTC 1 cut(s) 490
PmeI GTTTAAAC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 490
PpuMI RGGWCCY 1 cut(s) 895
Psp1406I AACGTT 1 cut(s) 107
Psp5II RGGWCCY 1 cut(s) 895
PspFI CCCAGC 1 cut(s) 644
PspN4I GGNNCC 3 cut(s) 441, 896, 897
PspPI GGNCC 2 cut(s) 761, 895
PspPPI RGGWCCY 1 cut(s) 895
PstNI CAGNNNCTG 1 cut(s) 563
PsyI GACNNNGTC 1 cut(s) 481
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
RseI CAYNNNNRTG 2 cut(s) 397, 454
SaqAI TTAA 3 cut(s) 111, 600, 1045
SatI GCNGC 5 cut(s) 51, 188, 249, 614, 732
Sau3AI GATC 7 cut(s) 17, 577, 664, 679, 750, 823, 1023
Sau96I GGNCC 2 cut(s) 761, 895
SchI GAGTC 1 cut(s) 491
SfaNI GCATC 1 cut(s) 260
SfuI TTCGAA 1 cut(s) 285
SinI GGWCC 1 cut(s) 895
SmiMI CAYNNNNRTG 2 cut(s) 397, 454
SmlI CTYRAG 1 cut(s) 599
SmoI CTYRAG 1 cut(s) 599
Sse9I AATT 8 cut(s) 202, 235, 265, 337, 693, 885, 943, 953
SsiI CCGC 3 cut(s) 185, 188, 224
SspMI CTAG 1 cut(s) 728
TaiI ACGT 1 cut(s) 110
TaqI TCGA 2 cut(s) 285, 485
TaqII GACCGA 1 cut(s) 494
TasI AATT 8 cut(s) 202, 235, 265, 337, 693, 885, 943, 953
TauI GCSGC 1 cut(s) 190
TfiI GAWTC 4 cut(s) 84, 287, 773, 999
Tru1I TTAA 3 cut(s) 111, 600, 1045
Tru9I TTAA 3 cut(s) 111, 600, 1045
TseFI GTSAC 1 cut(s) 367
TseI GCWGC 4 cut(s) 50, 248, 613, 731
Tsp45I GTSAC 1 cut(s) 367
TspDTI ATGAA 7 cut(s) 135, 327, 827, 845, 909, 965, 1031
Tth111I GACNNNGTC 1 cut(s) 481
Vha464I CTTAAG 1 cut(s) 599
VpaK11BI GGWCC 1 cut(s) 895
XapI RAATTY 5 cut(s) 202, 235, 265, 943, 953
XspI CTAG 1 cut(s) 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.