Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8485739.1

Orthogroup ID

OG0000886

Physical Location & Seq

Genomic Coordinates Forward (+)

1254 .. 2270

Gene Structure 1017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8485739.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

atgccgacggacggcgtcatttcggagaaggaggacaagcgaagaagaagaagaagaagatgggaggagttagacatggactgcttatcgaaggtgtttaacagagttggaatggagtcactgactttggcggtgccttttgtctgcaagtcgtggtacaaagctagcctcagtcctttatcctggcaagagctctcatttccagagttaacgcgttgttcttggagtttcgatgatgatgaagctcggagtttcggtacattttatgataagtttatggatcattttggaatcaataggagtagtttctcagtcactggttttgtgaagtctgtagtcgaccggagcaaagggggtgctaccctgctctggctgcctgcattctgtacagaggaagcattgagatatgtttcagatgcgtgtcctctcctcaagtttttgggttttgtggatgacttggtgctttttaagcattcgcaagttgttccggaagtgattgggaaatggaaatatttggaggtgttgcatttggggggcagctcggtgcctataatgcagcagatgttgatggagctgagaaaaggaaaacgctttagtgaacgtttcaaggccatgtttgcgtccgaaagtcctgaccgctataatgttttggagagaatcgttgtgcaaattggcgctcactgcaaaagatttacgactttgagtctttatcaagtcgatcttggtcaagttgaggcattggcaattgtgaacttgctgccaaacctttggagcatatcggcaacagggtgtaccattgaaagggatactgttgtcacaataatgcggggatgcaaaaatcttgggctttttcgtgccaatcattgtggcggttttgaagataatgatggagaaatatccaagcttgcttccaagactcgtcattttgcatgtgagggttgttcagaacttccagcccgtgctactgcatggaggaagtatgttttcatcaggattggatgggatattgtgggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

338

Amino Acids

38.55

Weight (kDa)

8.58

Isoelectric Point (pI)

52.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000886)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g05260 FvH4_3g05270 FvH4_3g09690 FvH4_3g38380 FvH4_3g39340 FvH4_3g39340 FvH4_6g09400 FvH4_6g09680 FvH4_6g09690
rosa_chinensis	RchiOBHm_Chr3g0460331 RchiOBHm_Chr3g0476661 RchiOBHm_Chr5g0014451 RchiOBHm_Chr6g0308401 RchiOBHm_Chr7g0215881
rosa_laevigata	RLG00000001978 RLG00000010644 RLG00000012354 RLG00000012356 RLG00000012358 RLG00000016486 RLG00000025021 RLG00000025022 RLG00000025023 RLG00000032111
rosa_multiflora	Rmu_co8233111.1_g000001 Rmu_co8485739.1_g000001 Rmu_sc0000449.1_g000008 Rmu_sc0000449.1_g000009 Rmu_sc0000449.1_g000010 Rmu_sc0001356.1_g000007 Rmu_sc0003583.1_g000005 Rmu_sc0008241.1_g000015 Rmu_sc0010030.1_g000005
rosa_roxburghii	Rroxscaffold_1G00062120 Rroxscaffold_6G00405110 Rroxscaffold_6G00419610 Rroxscaffold_6G00419620 Rroxscaffold_6G00419630
rosa_rugosa	Rorug03G0156300 Rorug06G0366500
rosa_samantha	Rh2BG091300 Rh2CG093900 Rh3AG099500 Rh3AG099600 Rh3BG103500 Rh3BG103600 Rh3BG239000 Rh3CG105100 Rh3CG105200 Rh3CG105300 Rh3CG233000 Rh3CG233100 Rh3DG104900 Rh3DG105000 Rh3DG232900 Rh5AG113300 Rh5BG110000 Rh5CG121800 Rh5DG109100 Rh6AG476000 Rh6BG290200 Rh6BG290500 Rh6BG316800 Rh6BG486300 Rh6CG491500
rosa_wichuraiana	Rw5G009830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	133, 544
AccI	GTMKAC	1 cut(s)	339
AccII	CGCG	1 cut(s)	214
AccIII	TCCGGA	1 cut(s)	487
AciI	CCGC	4 cut(s)	131, 637, 826, 870
AclI	AACGTT	1 cut(s)	601
AclWI	GGATC	1 cut(s)	288
AcyI	GRCGYC	1 cut(s)	15
AfaI	GTAC	4 cut(s)	158, 259, 388, 793
AfiI	CCNNNNNNNGG	3 cut(s)	11, 369, 801
AflIII	ACRYGT	1 cut(s)	212
AgsI	TTSAA	3 cut(s)	607, 800, 878
AhdI	GACNNNNNGTC	1 cut(s)	702
AjnI	CCWGG	1 cut(s)	182
AluBI	AGCT	6 cut(s)	164, 193, 245, 540, 574, 904
AluI	AGCT	6 cut(s)	164, 193, 245, 540, 574, 904
Alw21I	GWGCWC	1 cut(s)	195
AlwI	GGATC	1 cut(s)	288
AlwNI	CAGNNNCTG	1 cut(s)	317
Aor13HI	TCCGGA	1 cut(s)	487
AoxI	GGCC	1 cut(s)	609
ApeKI	GCWGC	4 cut(s)	373, 537, 556, 757
AspLEI	GCGC	1 cut(s)	677
AsuNHI	GCTAGC	1 cut(s)	164
BaeI	ACNNNNGTAYC	2 cut(s)	798, 831
BanI	GGYRCC	2 cut(s)	133, 544
BanII	GRGCYC	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	4 cut(s)	360, 549, 568, 744
BccI	CCATC	4 cut(s)	54, 562, 881, 993
BceAI	ACGGC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	184
BciVI	GTATCC	1 cut(s)	799
BfaI	CTAG	1 cut(s)	165
BfmI	CTRYAG	1 cut(s)	333
BfoI	RGCGCY	1 cut(s)	678
BfuI	GTATCC	1 cut(s)	799
BisI	GCNGC	4 cut(s)	374, 538, 557, 758
BlsI	GCNGC	4 cut(s)	375, 539, 558, 759
Bme1390I	CCNGG	1 cut(s)	184
BmeRI	GACNNNNNGTC	1 cut(s)	702
BmiI	GGNNCC	2 cut(s)	135, 546
BmrFI	CCNGG	1 cut(s)	184
BmsI	GCATC	2 cut(s)	406, 821
BmtI	GCTAGC	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	416
BsaHI	GRCGYC	1 cut(s)	15
BsaWI	WCCGGW	2 cut(s)	342, 487
BsaXI	ACNNNNNCTCC	2 cut(s)	241, 271
Bsc4I	CCNNNNNNNGG	3 cut(s)	11, 369, 801
Bse1I	ACTGG	1 cut(s)	322
BseAI	TCCGGA	1 cut(s)	487
BseBI	CCWGG	1 cut(s)	184
BseGI	GGATG	3 cut(s)	457, 836, 1004
BseLI	CCNNNNNNNGG	3 cut(s)	11, 369, 801
BseMII	CTCAG	3 cut(s)	184, 324, 566
BseNI	ACTGG	1 cut(s)	322
BseRI	GAGGAG	2 cut(s)	80, 419
BseXI	GCAGC	4 cut(s)	360, 549, 568, 744
Bsh1236I	CGCG	1 cut(s)	214
Bsh1285I	CGRYCG	1 cut(s)	343
BshFI	GGCC	1 cut(s)	611
BshNI	GGYRCC	2 cut(s)	133, 544
BsiEI	CGRYCG	1 cut(s)	343
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	2 cut(s)	343, 488
BslI	CCNNNNNNNGG	3 cut(s)	11, 369, 801
BsmI	GAATGC	2 cut(s)	380, 472
BsnI	GGCC	1 cut(s)	611
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp13I	TCCGGA	1 cut(s)	487
Bsp1407I	TGTACA	1 cut(s)	386
Bsp143I	GATC	2 cut(s)	280, 718
BspACI	CCGC	4 cut(s)	131, 637, 826, 870
BspANI	GGCC	1 cut(s)	611
BspCNI	CTCAG	3 cut(s)	183, 323, 567
BspEI	TCCGGA	1 cut(s)	487
BspFNI	CGCG	1 cut(s)	214
BspLI	GGNNCC	2 cut(s)	135, 546
BspOI	GCTAGC	1 cut(s)	168
BspPI	GGATC	1 cut(s)	288
BspT107I	GGYRCC	2 cut(s)	133, 544
BsrGI	TGTACA	1 cut(s)	386
BsrI	ACTGG	1 cut(s)	322
BssMI	GATC	2 cut(s)	280, 718
BssNI	GRCGYC	1 cut(s)	15
Bst2UI	CCWGG	1 cut(s)	184
Bst4CI	ACNGT	1 cut(s)	811
BstACI	GRCGYC	1 cut(s)	15
BstAUI	TGTACA	1 cut(s)	386
BstC8I	GCNNGC	3 cut(s)	166, 378, 906
BstDEI	CTNAG	3 cut(s)	170, 310, 575
BstF5I	GGATG	3 cut(s)	457, 836, 1004
BstFNI	CGCG	1 cut(s)	214
BstH2I	RGCGCY	1 cut(s)	678
BstHHI	GCGC	1 cut(s)	677
BstKTI	GATC	2 cut(s)	283, 721
BstMBI	GATC	2 cut(s)	280, 718
BstMCI	CGRYCG	1 cut(s)	343
BstMWI	GCNNNNNNNGC	5 cut(s)	373, 469, 553, 617, 681
BstNI	CCWGG	1 cut(s)	184
BstNSI	RCATGY	1 cut(s)	933
BstSCI	CCNGG	1 cut(s)	182
BstSFI	CTRYAG	1 cut(s)	333
BstUI	CGCG	1 cut(s)	214
BstV1I	GCAGC	4 cut(s)	360, 549, 568, 744
BstXI	CCANNNNNNTGG	1 cut(s)	768
BsuI	GTATCC	1 cut(s)	799
BsuRI	GGCC	1 cut(s)	611
BtsCI	GGATG	3 cut(s)	457, 836, 1004
BtsI	GCAGTG	1 cut(s)	679
BtsIMutI	CAGTG	3 cut(s)	119, 315, 679
Cac8I	GCNNGC	3 cut(s)	166, 378, 906
CaiI	CAGNNNCTG	1 cut(s)	317
CfoI	GCGC	1 cut(s)	677
CseI	GACGC	2 cut(s)	4, 609
Csp6I	GTAC	4 cut(s)	157, 258, 387, 792
CspCI	CAANNNNNGTGG	2 cut(s)	847, 882
CviAII	CATG	4 cut(s)	76, 613, 930, 969
CviQI	GTAC	4 cut(s)	157, 258, 387, 792
DdeI	CTNAG	3 cut(s)	170, 310, 575
DpnI	GATC	2 cut(s)	282, 720
DpnII	GATC	2 cut(s)	280, 718
DriI	GACNNNNNGTC	1 cut(s)	702
Eam1105I	GACNNNNNGTC	1 cut(s)	702
Ecl136II	GAGCTC	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	195
Eco53kI	GAGCTC	1 cut(s)	193
EcoICRI	GAGCTC	1 cut(s)	193
EcoRII	CCWGG	1 cut(s)	182
EcoT38I	GRGCYC	1 cut(s)	195
FaeI	CATG	4 cut(s)	79, 616, 933, 972
FalI	AAGNNNNNCTT	2 cut(s)	705, 737
FatI	CATG	4 cut(s)	75, 612, 929, 968
FauI	CCCGC	1 cut(s)	819
FblI	GTMKAC	1 cut(s)	339
Fnu4HI	GCNGC	4 cut(s)	374, 538, 557, 758
FokI	GGATG	3 cut(s)	464, 843, 1011
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	4 cut(s)	374, 538, 557, 758
FspBI	CTAG	1 cut(s)	165
GlaI	GCGC	1 cut(s)	676
GluI	GCNGC	4 cut(s)	374, 538, 557, 758
HaeII	RGCGCY	1 cut(s)	678
HaeIII	GGCC	1 cut(s)	611
HapII	CCGG	2 cut(s)	343, 488
HgaI	GACGC	2 cut(s)	4, 609
HhaI	GCGC	1 cut(s)	677
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	4 cut(s)	79, 616, 933, 972
Hin6I	GCGC	1 cut(s)	675
HinP1I	GCGC	1 cut(s)	675
HincII	GTYRAC	2 cut(s)	210, 340
HindII	GTYRAC	2 cut(s)	210, 340
HindIII	AAGCTT	1 cut(s)	902
HinfI	GANTC	5 cut(s)	116, 291, 657, 703, 916
HpaI	GTTAAC	1 cut(s)	210
HpaII	CCGG	2 cut(s)	343, 488
Hpy166II	GTNNAC	5 cut(s)	210, 340, 599, 751, 792
Hpy188I	TCNGA	5 cut(s)	25, 249, 415, 625, 946
Hpy188III	TCNNGA	4 cut(s)	203, 488, 632, 991
Hpy8I	GTNNAC	5 cut(s)	210, 340, 599, 751, 792
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	2 cut(s)	22, 85
HpyCH4III	ACNGT	1 cut(s)	811
HpyCH4IV	ACGT	1 cut(s)	601
HpyCH4V	TGCA	9 cut(s)	147, 380, 526, 556, 667, 684, 834, 929, 968
HpyF10VI	GCNNNNNNNGC	5 cut(s)	373, 469, 553, 617, 681
HpyF3I	CTNAG	3 cut(s)	170, 310, 575
HpySE526I	ACGT	1 cut(s)	601
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	4 cut(s)	79, 616, 933, 972
HspAI	GCGC	1 cut(s)	675
Kpn2I	TCCGGA	1 cut(s)	487
KspAI	GTTAAC	1 cut(s)	210
Kzo9I	GATC	2 cut(s)	280, 718
LmnI	GCTCC	3 cut(s)	345, 571, 771
Lsp1109I	GCAGC	4 cut(s)	360, 549, 568, 744
LweI	GCATC	2 cut(s)	406, 821
MaeI	CTAG	1 cut(s)	165
MaeII	ACGT	1 cut(s)	601
MaeIII	GTNAC	3 cut(s)	117, 313, 814
MalI	GATC	2 cut(s)	282, 720
MboI	GATC	2 cut(s)	280, 718
MboII	GAAGA	7 cut(s)	54, 57, 60, 63, 66, 69, 890
MfeI	CAATTG	1 cut(s)	744
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	2 cut(s)	669, 744
MluI	ACGCGT	1 cut(s)	212
MlyI	GAGTC	3 cut(s)	125, 712, 910
MmeI	TCCRAC	1 cut(s)	88
MroI	TCCGGA	1 cut(s)	487
MseI	TTAA	3 cut(s)	99, 209, 468
MslI	CAYNNNNRTG	1 cut(s)	821
MspI	CCGG	2 cut(s)	343, 488
MspR9I	CCNGG	1 cut(s)	184
MunI	CAATTG	1 cut(s)	744
Mva1269I	GAATGC	2 cut(s)	380, 472
MvaI	CCWGG	1 cut(s)	184
MvnI	CGCG	1 cut(s)	214
MwoI	GCNNNNNNNGC	5 cut(s)	373, 469, 553, 617, 681
NdeII	GATC	2 cut(s)	280, 718
NheI	GCTAGC	1 cut(s)	164
NlaIII	CATG	4 cut(s)	79, 616, 933, 972
NlaIV	GGNNCC	2 cut(s)	135, 546
NmuCI	GTSAC	3 cut(s)	117, 313, 814
NspI	RCATGY	1 cut(s)	933
PctI	GAATGC	2 cut(s)	380, 472
PfeI	GAWTC	2 cut(s)	291, 657
PflFI	GACNNNGTC	1 cut(s)	14
PkrI	GCNGC	4 cut(s)	375, 539, 558, 759
PleI	GAGTC	3 cut(s)	124, 711, 910
PpsI	GAGTC	3 cut(s)	124, 711, 910
Psp124BI	GAGCTC	1 cut(s)	195
Psp1406I	AACGTT	1 cut(s)	601
Psp6I	CCWGG	1 cut(s)	182
PspGI	CCWGG	1 cut(s)	182
PspN4I	GGNNCC	2 cut(s)	135, 546
PstNI	CAGNNNCTG	1 cut(s)	317
PsyI	GACNNNGTC	1 cut(s)	14
RsaI	GTAC	4 cut(s)	158, 259, 388, 793
RsaNI	GTAC	4 cut(s)	157, 258, 387, 792
RseI	CAYNNNNRTG	1 cut(s)	821
SacI	GAGCTC	1 cut(s)	195
SalI	GTCGAC	1 cut(s)	338
SaqAI	TTAA	3 cut(s)	99, 209, 468
SatI	GCNGC	4 cut(s)	374, 538, 557, 758
Sau3AI	GATC	2 cut(s)	280, 718
SchI	GAGTC	3 cut(s)	125, 712, 910
ScrFI	CCNGG	1 cut(s)	184
SduI	GDGCHC	1 cut(s)	195
SfaNI	GCATC	2 cut(s)	406, 821
SfcI	CTRYAG	1 cut(s)	333
SmiMI	CAYNNNNRTG	1 cut(s)	821
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
Sse9I	AATT	2 cut(s)	669, 744
SsiI	CCGC	4 cut(s)	131, 637, 826, 870
SspI	AATATT	1 cut(s)	512
SspMI	CTAG	1 cut(s)	165
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	182
TaaI	ACNGT	1 cut(s)	811
TaiI	ACGT	1 cut(s)	604
TaqI	TCGA	4 cut(s)	89, 231, 339, 717
TasI	AATT	2 cut(s)	669, 744
TatI	WGTACW	1 cut(s)	386
TfiI	GAWTC	2 cut(s)	291, 657
Tru1I	TTAA	3 cut(s)	99, 209, 468
Tru9I	TTAA	3 cut(s)	99, 209, 468
TscAI	CASTG	3 cut(s)	126, 322, 686
TseFI	GTSAC	3 cut(s)	117, 313, 814
TseI	GCWGC	4 cut(s)	373, 537, 556, 757
Tsp45I	GTSAC	3 cut(s)	117, 313, 814
TspDTI	ATGAA	2 cut(s)	255, 976
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	3 cut(s)	126, 322, 686
Tth111I	GACNNNGTC	1 cut(s)	14
XceI	RCATGY	1 cut(s)	933
XmiI	GTMKAC	1 cut(s)	339
XspI	CTAG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.