Rh5CG121800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000886
Physical Location & Seq
Reverse (-)
10080130 .. 10081816
1687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG121800.1

Sequence Viewer

Length: 1014 bp
ATGCCGACGGACGGCGTCATTTCGGAGAAGGAGGACAAGCGAAGAAGAAGAAGAAGATGGGAGGAGTTAGACATGGACTGCTTATCGAAGGTGTTTAACAGAGTTGGAATGGAGTCACTGGTTTTGGCGGTGCCTTTTGTCTGCAAGTCGTGGTACAAAGCTAGCCTCAGTCCTTTATCCTGGCAAGAGCTCTCATTTCCAGAGTTAACGCGTTGTTCTTGGAGTTTCGATGATGATGAAGCTCGGAGTTTCGGTACATTTTATGATAAGTTTATGGATCATTTTGGAATCAATAGGAGCAGTTTCTCAATCACTGGTTTTGTGAAGTCTGTAGTCGACCGGAGCAAAGGGGGTGCTACCCTGCTCTGGCTGCCTGCATTCTGTACAGAGGAAGCATTGAGATATGTTTCAGATGCGTGTCCTCTCCTCAAGTTTTTGGGTTTTGTCGATGACTTGGTGCTTTTTAAGCATTCGCAAGTTGTTCCGGAAGTGATTGGGAAATGGAAATATTTGGAGGTGTTGCATTTGGGGGGCAGCTCGGTGCCTGTAATGCAGCAGATGTTGATGGAGCTGAGAAAAGGAAAACGCTTTAGTGAACGTTTCAAGGCGATGTTTGCGTCCGAAAGTCCTGACCGCTATAATGTTTTGGAGAGAATCGTTGTGCAAATTGGCGCTCACTGCAAAAGATGTACGACTCTGAGTCTTTATCAAGTCGATCTTGGTCAAGTTGAGGCATTGGCAATTGTGAACTTGCTGCCAAACCTTCGGTGCATATCGGCAACAGGGTGTACCATTGAAAGGGATACTGTTGTCACAATAATGCGGGGATGCAAAAATCTTGGGCTTTTTCGTGCCAATCATTGTGGCGGTTTTGAAGATAATGATGGAGAAATATCCAAGCTTGCTTCCAAGACTCGTCATTTTGCATGTGAGGGTTGTTCAGACCTTCCAGCCCGTGCTACTGCATGGAGGAAGTATGTTTTCATCAGGATTGGATGGGATATTGTGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

337

Amino Acids

38.32

Weight (kDa)

8.51

Isoelectric Point (pI)

51.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 130, 541
AccI GTMKAC 1 cut(s) 336
AccII CGCG 1 cut(s) 211
AccIII TCCGGA 1 cut(s) 484
AciI CCGC 4 cut(s) 128, 634, 823, 867
AclI AACGTT 1 cut(s) 598
AclWI GGATC 1 cut(s) 285
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 5 cut(s) 155, 256, 385, 691, 790
AfiI CCNNNNNNNGG 3 cut(s) 11, 366, 798
AflIII ACRYGT 1 cut(s) 209
AgsI TTSAA 3 cut(s) 604, 797, 875
AhdI GACNNNNNGTC 1 cut(s) 699
AjnI CCWGG 1 cut(s) 179
AluBI AGCT 6 cut(s) 161, 190, 242, 537, 571, 901
AluI AGCT 6 cut(s) 161, 190, 242, 537, 571, 901
Alw21I GWGCWC 1 cut(s) 192
AlwI GGATC 1 cut(s) 285
Aor13HI TCCGGA 1 cut(s) 484
ApeKI GCWGC 4 cut(s) 370, 534, 553, 754
AspLEI GCGC 1 cut(s) 674
AsuNHI GCTAGC 1 cut(s) 161
BaeI ACNNNNGTAYC 2 cut(s) 795, 828
BanI GGYRCC 2 cut(s) 130, 541
BanII GRGCYC 1 cut(s) 192
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 4 cut(s) 357, 546, 565, 741
BccI CCATC 4 cut(s) 51, 559, 878, 990
BceAI ACGGC 1 cut(s) 28
BciT130I CCWGG 1 cut(s) 181
BciVI GTATCC 1 cut(s) 796
BfaI CTAG 1 cut(s) 162
BfmI CTRYAG 1 cut(s) 330
BfoI RGCGCY 1 cut(s) 675
BfuI GTATCC 1 cut(s) 796
BisI GCNGC 4 cut(s) 371, 535, 554, 755
BlsI GCNGC 4 cut(s) 372, 536, 555, 756
Bme1390I CCNGG 1 cut(s) 181
BmeRI GACNNNNNGTC 1 cut(s) 699
BmiI GGNNCC 2 cut(s) 132, 543
BmrFI CCNGG 1 cut(s) 181
BmsI GCATC 2 cut(s) 403, 818
BmtI GCTAGC 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 413
BsaHI GRCGYC 1 cut(s) 15
BsaWI WCCGGW 2 cut(s) 339, 484
BsaXI ACNNNNNCTCC 2 cut(s) 238, 268
Bsc4I CCNNNNNNNGG 3 cut(s) 11, 366, 798
Bse1I ACTGG 2 cut(s) 123, 319
BseAI TCCGGA 1 cut(s) 484
BseBI CCWGG 1 cut(s) 181
BseGI GGATG 2 cut(s) 833, 1001
BseLI CCNNNNNNNGG 3 cut(s) 11, 366, 798
BseMII CTCAG 3 cut(s) 181, 563, 689
BseNI ACTGG 2 cut(s) 123, 319
BseRI GAGGAG 2 cut(s) 77, 416
BseXI GCAGC 4 cut(s) 357, 546, 565, 741
Bsh1236I CGCG 1 cut(s) 211
Bsh1285I CGRYCG 1 cut(s) 340
BshNI GGYRCC 2 cut(s) 130, 541
BsiEI CGRYCG 1 cut(s) 340
BsiHKAI GWGCWC 1 cut(s) 192
BsiSI CCGG 2 cut(s) 340, 485
BslI CCNNNNNNNGG 3 cut(s) 11, 366, 798
BsmI GAATGC 2 cut(s) 377, 469
Bsp1286I GDGCHC 1 cut(s) 192
Bsp13I TCCGGA 1 cut(s) 484
Bsp1407I TGTACA 1 cut(s) 383
Bsp143I GATC 2 cut(s) 277, 715
BspACI CCGC 4 cut(s) 128, 634, 823, 867
BspCNI CTCAG 3 cut(s) 180, 564, 690
BspEI TCCGGA 1 cut(s) 484
BspFNI CGCG 1 cut(s) 211
BspLI GGNNCC 2 cut(s) 132, 543
BspOI GCTAGC 1 cut(s) 165
BspPI GGATC 1 cut(s) 285
BspT107I GGYRCC 2 cut(s) 130, 541
BsrGI TGTACA 1 cut(s) 383
BsrI ACTGG 2 cut(s) 123, 319
BssMI GATC 2 cut(s) 277, 715
BssNI GRCGYC 1 cut(s) 15
Bst2UI CCWGG 1 cut(s) 181
Bst4CI ACNGT 1 cut(s) 808
BstACI GRCGYC 1 cut(s) 15
BstAUI TGTACA 1 cut(s) 383
BstC8I GCNNGC 3 cut(s) 163, 375, 903
BstDEI CTNAG 3 cut(s) 167, 572, 698
BstF5I GGATG 2 cut(s) 833, 1001
BstFNI CGCG 1 cut(s) 211
BstH2I RGCGCY 1 cut(s) 675
BstHHI GCGC 1 cut(s) 674
BstKTI GATC 2 cut(s) 280, 718
BstMBI GATC 2 cut(s) 277, 715
BstMCI CGRYCG 1 cut(s) 340
BstMWI GCNNNNNNNGC 5 cut(s) 370, 466, 550, 614, 678
BstNI CCWGG 1 cut(s) 181
BstNSI RCATGY 1 cut(s) 930
BstSCI CCNGG 1 cut(s) 179
BstSFI CTRYAG 1 cut(s) 330
BstUI CGCG 1 cut(s) 211
BstV1I GCAGC 4 cut(s) 357, 546, 565, 741
BsuI GTATCC 1 cut(s) 796
BtgZI GCGATG 1 cut(s) 623
BtsCI GGATG 2 cut(s) 833, 1001
BtsI GCAGTG 1 cut(s) 676
BtsIMutI CAGTG 3 cut(s) 116, 312, 676
Cac8I GCNNGC 3 cut(s) 163, 375, 903
CfoI GCGC 1 cut(s) 674
CseI GACGC 2 cut(s) 4, 606
Csp6I GTAC 5 cut(s) 154, 255, 384, 690, 789
CspCI CAANNNNNGTGG 2 cut(s) 844, 879
CviAII CATG 3 cut(s) 73, 927, 966
CviQI GTAC 5 cut(s) 154, 255, 384, 690, 789
DdeI CTNAG 3 cut(s) 167, 572, 698
DpnI GATC 2 cut(s) 279, 717
DpnII GATC 2 cut(s) 277, 715
DriI GACNNNNNGTC 1 cut(s) 699
Eam1105I GACNNNNNGTC 1 cut(s) 699
Ecl136II GAGCTC 1 cut(s) 190
Eco24I GRGCYC 1 cut(s) 192
Eco53kI GAGCTC 1 cut(s) 190
EcoICRI GAGCTC 1 cut(s) 190
EcoRII CCWGG 1 cut(s) 179
EcoT38I GRGCYC 1 cut(s) 192
FaeI CATG 3 cut(s) 76, 930, 969
FaiI YATR 9 cut(s) 74, 264, 275, 405, 639, 773, 928, 967, 978
FalI AAGNNNNNCTT 2 cut(s) 702, 734
FatI CATG 3 cut(s) 72, 926, 965
FauI CCCGC 1 cut(s) 816
FblI GTMKAC 1 cut(s) 336
Fnu4HI GCNGC 4 cut(s) 371, 535, 554, 755
FokI GGATG 2 cut(s) 840, 1008
FriOI GRGCYC 1 cut(s) 192
Fsp4HI GCNGC 4 cut(s) 371, 535, 554, 755
FspBI CTAG 1 cut(s) 162
GlaI GCGC 1 cut(s) 673
GluI GCNGC 4 cut(s) 371, 535, 554, 755
HaeII RGCGCY 1 cut(s) 675
HapII CCGG 2 cut(s) 340, 485
HgaI GACGC 2 cut(s) 4, 606
HhaI GCGC 1 cut(s) 674
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 3 cut(s) 76, 930, 969
Hin6I GCGC 1 cut(s) 672
HinP1I GCGC 1 cut(s) 672
HincII GTYRAC 2 cut(s) 207, 337
HindII GTYRAC 2 cut(s) 207, 337
HindIII AAGCTT 1 cut(s) 899
HinfI GANTC 6 cut(s) 113, 288, 654, 694, 700, 913
HpaI GTTAAC 1 cut(s) 207
HpaII CCGG 2 cut(s) 340, 485
Hpy166II GTNNAC 5 cut(s) 207, 337, 596, 748, 789
Hpy188I TCNGA 6 cut(s) 25, 246, 412, 622, 699, 943
Hpy188III TCNNGA 4 cut(s) 200, 485, 629, 988
Hpy8I GTNNAC 5 cut(s) 207, 337, 596, 748, 789
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 4 cut(s) 22, 82, 773, 956
HpyCH4III ACNGT 1 cut(s) 808
HpyCH4IV ACGT 1 cut(s) 598
HpyF10VI GCNNNNNNNGC 5 cut(s) 370, 466, 550, 614, 678
HpyF3I CTNAG 3 cut(s) 167, 572, 698
HpySE526I ACGT 1 cut(s) 598
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 3 cut(s) 76, 930, 969
HspAI GCGC 1 cut(s) 672
Kpn2I TCCGGA 1 cut(s) 484
KspAI GTTAAC 1 cut(s) 207
Kzo9I GATC 2 cut(s) 277, 715
LmnI GCTCC 3 cut(s) 297, 342, 568
Lsp1109I GCAGC 4 cut(s) 357, 546, 565, 741
LweI GCATC 2 cut(s) 403, 818
MaeI CTAG 1 cut(s) 162
MaeII ACGT 1 cut(s) 598
MaeIII GTNAC 2 cut(s) 114, 811
MalI GATC 2 cut(s) 279, 717
MboI GATC 2 cut(s) 277, 715
MboII GAAGA 6 cut(s) 54, 57, 60, 63, 66, 887
MfeI CAATTG 1 cut(s) 741
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 2 cut(s) 666, 741
MluI ACGCGT 1 cut(s) 209
MlyI GAGTC 4 cut(s) 122, 688, 709, 907
MmeI TCCRAC 1 cut(s) 85
MroI TCCGGA 1 cut(s) 484
MseI TTAA 3 cut(s) 96, 206, 465
MslI CAYNNNNRTG 1 cut(s) 818
MspI CCGG 2 cut(s) 340, 485
MspR9I CCNGG 1 cut(s) 181
MunI CAATTG 1 cut(s) 741
Mva1269I GAATGC 2 cut(s) 377, 469
MvaI CCWGG 1 cut(s) 181
MvnI CGCG 1 cut(s) 211
MwoI GCNNNNNNNGC 5 cut(s) 370, 466, 550, 614, 678
NdeII GATC 2 cut(s) 277, 715
NheI GCTAGC 1 cut(s) 161
NlaIII CATG 3 cut(s) 76, 930, 969
NlaIV GGNNCC 2 cut(s) 132, 543
NmuCI GTSAC 2 cut(s) 114, 811
NspI RCATGY 1 cut(s) 930
PctI GAATGC 2 cut(s) 377, 469
PfeI GAWTC 2 cut(s) 288, 654
PflFI GACNNNGTC 1 cut(s) 14
PkrI GCNGC 4 cut(s) 372, 536, 555, 756
PleI GAGTC 4 cut(s) 121, 688, 708, 907
PpsI GAGTC 4 cut(s) 121, 688, 708, 907
Psp124BI GAGCTC 1 cut(s) 192
Psp1406I AACGTT 1 cut(s) 598
Psp6I CCWGG 1 cut(s) 179
PspGI CCWGG 1 cut(s) 179
PspN4I GGNNCC 2 cut(s) 132, 543
PsyI GACNNNGTC 1 cut(s) 14
RsaI GTAC 5 cut(s) 155, 256, 385, 691, 790
RsaNI GTAC 5 cut(s) 154, 255, 384, 690, 789
RseI CAYNNNNRTG 1 cut(s) 818
SacI GAGCTC 1 cut(s) 192
SalI GTCGAC 1 cut(s) 335
SaqAI TTAA 3 cut(s) 96, 206, 465
SatI GCNGC 4 cut(s) 371, 535, 554, 755
Sau3AI GATC 2 cut(s) 277, 715
SchI GAGTC 4 cut(s) 122, 688, 709, 907
ScrFI CCNGG 1 cut(s) 181
SduI GDGCHC 1 cut(s) 192
SfaNI GCATC 2 cut(s) 403, 818
SfcI CTRYAG 1 cut(s) 330
SmiMI CAYNNNNRTG 1 cut(s) 818
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
Sse9I AATT 2 cut(s) 666, 741
SsiI CCGC 4 cut(s) 128, 634, 823, 867
SspI AATATT 1 cut(s) 509
SspMI CTAG 1 cut(s) 162
SstI GAGCTC 1 cut(s) 192
StyD4I CCNGG 1 cut(s) 179
TaaI ACNGT 1 cut(s) 808
TaiI ACGT 1 cut(s) 601
TaqI TCGA 5 cut(s) 86, 228, 336, 447, 714
TasI AATT 2 cut(s) 666, 741
TatI WGTACW 1 cut(s) 383
TfiI GAWTC 2 cut(s) 288, 654
Tru1I TTAA 3 cut(s) 96, 206, 465
Tru9I TTAA 3 cut(s) 96, 206, 465
TscAI CASTG 3 cut(s) 123, 319, 683
TseFI GTSAC 2 cut(s) 114, 811
TseI GCWGC 4 cut(s) 370, 534, 553, 754
Tsp45I GTSAC 2 cut(s) 114, 811
TspDTI ATGAA 2 cut(s) 252, 973
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 3 cut(s) 123, 319, 683
Tth111I GACNNNGTC 1 cut(s) 14
XceI RCATGY 1 cut(s) 930
XmiI GTMKAC 1 cut(s) 336
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.