Rh3CG233000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000886
Physical Location & Seq
Reverse (-)
21996081 .. 21997094
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG233000.1

Sequence Viewer

Length: 1014 bp
ATGGAAGATGAGGGAATCAGAATCAAAAGATGGAAGGATTTAGAGACGGACTGTTTGACTCGTGTGCTTTCCAGGGTTGGAATGGAGTCTTTGCTCCTGACAGTTCCTTTCGTCTGCAAATCATGGTACGTTACAAGTCTCAATCCCTTGTGCTTTCAAAGCCTCATATTTCCAGACTTTATGCCTTTTCCTCTGTTCACGTATTCTAATAATAGTAAGGAACCTCCTCGGAGTTTTGGTCCCTTTTATGATAAGTTTATAGACGAGTATGGCATTGATAAGACTCGTTTCTCGATCACTGCATTTGTGAAGTTTGTAGTCAATCGTAGCAATGGATTAGCTATTCAACTTAAGCTACCAGAATTCTGTACCAAAGAAGGGTTGATGTTTGTTTCGGACGCATGCCCTCTTCTTAAGAATGTATGGTTGCCAGATGATTTGGTGATTTTCAAGACTTCTCACATTGTTTCACAGTTGATTAGGAAGTGGAAATTTTTGGAGAGCTTGATTTTGGGGTTTGGGATGTTGAACATCATGGACCAGTATGAAATGGATGGTAGGCCTAAGTTTTTGAGTGAACATTTCAATAAGTTATTGACAATGAAAGGTTTCGTCTCCCCTAATGCTTTGGATGCAATTTTAGTCCAGATTGGCACACATTGCAAGCATTTTACGGATTTAATGGTTTATCATACTAGCCTTGGTGAAGTTGAGGCCTCAAGGATTGCGAAGTCACTGCCAAAACTTAAGAAGTTGGTCTTGAGTAATTGTCACATTAATCGGGACAGTGTTGTTACTGTACTGAGGGGGTGCAAAGAGCTTGTACTTTTTATTGCCGATCAATGTGAAGGCTTTGAAGGGAGTGATGAAGAAATATCAAAATTTGGTTCTCACATTATGAACTTTTCGTGCCAGGATTGCGTAGGCGGTGATTTGTTATCGACTTTTTTCAAACTTATTAATGTACATAGGAGGTTAGTTTCCATAATGTTCTTAATGTACATGGGAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

337

Amino Acids

38.59

Weight (kDa)

7.53

Isoelectric Point (pI)

41.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 927
AcsI RAATTY 3 cut(s) 362, 491, 881
AfaI GTAC 6 cut(s) 128, 370, 801, 825, 966, 1001
AfiI CCNNNNNNNGG 1 cut(s) 378
AflII CTTAAG 3 cut(s) 350, 413, 746
AgsI TTSAA 7 cut(s) 158, 347, 451, 529, 586, 857, 952
AjnI CCWGG 2 cut(s) 71, 912
AluBI AGCT 4 cut(s) 341, 355, 504, 820
AluI AGCT 4 cut(s) 341, 355, 504, 820
Alw26I GTCTC 3 cut(s) 38, 143, 619
AoxI GGCC 2 cut(s) 560, 714
ApoI RAATTY 3 cut(s) 362, 491, 881
ArsI GACNNNNNNTTYG 2 cut(s) 37, 69
AseI ATTAAT 2 cut(s) 777, 960
Asp700I GAANNNNTTC 1 cut(s) 608
AspS9I GGNCC 2 cut(s) 239, 538
AsuHPI GGTGA 3 cut(s) 454, 716, 941
AvaII GGWCC 2 cut(s) 239, 538
BauI CACGAG 1 cut(s) 60
BccI CCATC 2 cut(s) 24, 548
BcgI CGANNNNNNTGC 2 cut(s) 718, 752
BciT130I CCWGG 2 cut(s) 73, 914
BcoDI GTCTC 3 cut(s) 38, 143, 619
BfaI CTAG 1 cut(s) 696
BfrI CTTAAG 3 cut(s) 350, 413, 746
Bme1390I CCNGG 2 cut(s) 73, 914
Bme18I GGWCC 2 cut(s) 239, 538
BmgT120I GGNCC 2 cut(s) 239, 538
BmiI GGNNCC 2 cut(s) 222, 241
BmrFI CCNGG 2 cut(s) 73, 914
BmsI GCATC 1 cut(s) 622
BpuEI CTTGAG 2 cut(s) 703, 781
BsaAI YACGTR 1 cut(s) 201
BsaJI CCNNGG 3 cut(s) 72, 227, 700
BsaXI ACNNNNNCTCC 2 cut(s) 223, 253
Bsc4I CCNNNNNNNGG 1 cut(s) 378
Bse1I ACTGG 1 cut(s) 541
Bse3DI GCAATG 2 cut(s) 337, 658
BseBI CCWGG 2 cut(s) 73, 914
BseDI CCNNGG 3 cut(s) 72, 227, 700
BseGI GGATG 3 cut(s) 528, 559, 637
BseLI CCNNNNNNNGG 1 cut(s) 378
BseMI GCAATG 2 cut(s) 337, 658
BseMII CTCAG 1 cut(s) 794
BseNI ACTGG 1 cut(s) 541
BseRI GAGGAG 1 cut(s) 216
BshFI GGCC 2 cut(s) 562, 716
BslFI GGGAC 2 cut(s) 225, 797
BslI CCNNNNNNNGG 1 cut(s) 378
BsmAI GTCTC 3 cut(s) 38, 143, 619
BsmBI CGTCTC 2 cut(s) 38, 619
BsmFI GGGAC 2 cut(s) 225, 797
BsnI GGCC 2 cut(s) 562, 716
Bsp1407I TGTACA 2 cut(s) 964, 999
Bsp143I GATC 2 cut(s) 294, 838
BspACI CCGC 1 cut(s) 927
BspANI GGCC 2 cut(s) 562, 716
BspCNI CTCAG 1 cut(s) 795
BspLI GGNNCC 2 cut(s) 222, 241
BspTI CTTAAG 3 cut(s) 350, 413, 746
BsrDI GCAATG 2 cut(s) 337, 658
BsrGI TGTACA 2 cut(s) 964, 999
BsrI ACTGG 1 cut(s) 541
BssECI CCNNGG 3 cut(s) 72, 227, 700
BssMI GATC 2 cut(s) 294, 838
BssSI CACGAG 1 cut(s) 60
BssT1I CCWWGG 1 cut(s) 700
Bst2BI CACGAG 1 cut(s) 60
Bst2UI CCWGG 2 cut(s) 73, 914
Bst4CI ACNGT 5 cut(s) 53, 103, 474, 788, 799
Bst6I CTCTTC 1 cut(s) 414
BstAFI CTTAAG 3 cut(s) 350, 413, 746
BstAPI GCANNNNNTGC 1 cut(s) 660
BstAUI TGTACA 2 cut(s) 964, 999
BstBAI YACGTR 1 cut(s) 201
BstC8I GCNNGC 2 cut(s) 403, 665
BstDEI CTNAG 2 cut(s) 564, 803
BstF5I GGATG 3 cut(s) 528, 559, 637
BstKTI GATC 2 cut(s) 297, 841
BstMAI GTCTC 3 cut(s) 38, 143, 619
BstMBI GATC 2 cut(s) 294, 838
BstMWI GCNNNNNNNGC 4 cut(s) 159, 632, 660, 918
BstNI CCWGG 2 cut(s) 73, 914
BstNSI RCATGY 1 cut(s) 405
BstSCI CCNGG 2 cut(s) 71, 912
BsuRI GGCC 2 cut(s) 562, 716
BtsCI GGATG 3 cut(s) 528, 559, 637
BtsI GCAGTG 2 cut(s) 297, 734
BtsIMutI CAGTG 3 cut(s) 297, 734, 793
Cac8I GCNNGC 2 cut(s) 403, 665
Cfr13I GGNCC 2 cut(s) 239, 538
CseI GACGC 1 cut(s) 407
Csp6I GTAC 6 cut(s) 127, 369, 800, 824, 965, 1000
CviAII CATG 4 cut(s) 123, 402, 535, 1003
CviJI RGCY 9 cut(s) 162, 341, 355, 504, 562, 699, 716, 820, 852
CviKI_1 RGCY 9 cut(s) 162, 341, 355, 504, 562, 699, 716, 820, 852
CviQI GTAC 6 cut(s) 127, 369, 800, 824, 965, 1000
DdeI CTNAG 2 cut(s) 564, 803
DpnI GATC 2 cut(s) 296, 840
DpnII GATC 2 cut(s) 294, 838
Eam1104I CTCTTC 1 cut(s) 414
EarI CTCTTC 1 cut(s) 414
Eco130I CCWWGG 1 cut(s) 700
Eco147I AGGCCT 2 cut(s) 562, 716
Eco47I GGWCC 2 cut(s) 239, 538
EcoRI GAATTC 1 cut(s) 362
EcoRII CCWGG 2 cut(s) 71, 912
EcoT14I CCWWGG 1 cut(s) 700
ErhI CCWWGG 1 cut(s) 700
Esp3I CGTCTC 2 cut(s) 38, 619
FaeI CATG 4 cut(s) 126, 405, 538, 1006
FalI AAGNNNNNCTT 2 cut(s) 743, 775
FaqI GGGAC 2 cut(s) 225, 797
FatI CATG 4 cut(s) 122, 401, 534, 1002
FokI GGATG 3 cut(s) 535, 566, 644
FspBI CTAG 1 cut(s) 696
HaeIII GGCC 2 cut(s) 562, 716
HgaI GACGC 1 cut(s) 407
Hin1II CATG 4 cut(s) 126, 405, 538, 1006
HinfI GANTC 5 cut(s) 15, 21, 58, 86, 283
HphI GGTGA 3 cut(s) 454, 716, 941
Hpy166II GTNNAC 2 cut(s) 198, 578
Hpy188I TCNGA 3 cut(s) 20, 231, 397
Hpy188III TCNNGA 7 cut(s) 97, 173, 292, 451, 646, 760, 782
Hpy8I GTNNAC 2 cut(s) 198, 578
HpyAV CCTTC 4 cut(s) 28, 371, 842, 851
HpyCH4III ACNGT 5 cut(s) 53, 103, 474, 788, 799
HpyCH4IV ACGT 2 cut(s) 129, 200
HpyCH4V TGCA 5 cut(s) 117, 302, 635, 663, 813
HpyF10VI GCNNNNNNNGC 4 cut(s) 159, 632, 660, 918
HpyF3I CTNAG 2 cut(s) 564, 803
HpySE526I ACGT 2 cut(s) 129, 200
Hsp92II CATG 4 cut(s) 126, 405, 538, 1006
Kzo9I GATC 2 cut(s) 294, 838
LmnI GCTCC 1 cut(s) 99
LweI GCATC 1 cut(s) 622
MaeI CTAG 1 cut(s) 696
MaeII ACGT 2 cut(s) 129, 200
MaeIII GTNAC 4 cut(s) 130, 732, 770, 793
MalI GATC 2 cut(s) 296, 840
MboI GATC 2 cut(s) 294, 838
MboII GAAGA 3 cut(s) 17, 401, 881
MluCI AATT 5 cut(s) 362, 491, 636, 766, 881
MlyI GAGTC 3 cut(s) 52, 95, 277
MmeI TCCRAC 1 cut(s) 58
MroXI GAANNNNTTC 1 cut(s) 608
MseI TTAA 7 cut(s) 351, 414, 680, 747, 777, 960, 995
MspCI CTTAAG 3 cut(s) 350, 413, 746
MspR9I CCNGG 2 cut(s) 73, 914
MvaI CCWGG 2 cut(s) 73, 914
MwoI GCNNNNNNNGC 4 cut(s) 159, 632, 660, 918
NdeII GATC 2 cut(s) 294, 838
NlaIII CATG 4 cut(s) 126, 405, 538, 1006
NlaIV GGNNCC 2 cut(s) 222, 241
NmuCI GTSAC 2 cut(s) 732, 770
NspI RCATGY 1 cut(s) 405
PaeI GCATGC 1 cut(s) 405
PceI AGGCCT 2 cut(s) 562, 716
PdmI GAANNNNTTC 1 cut(s) 608
PfeI GAWTC 2 cut(s) 15, 21
PleI GAGTC 3 cut(s) 52, 94, 277
PpsI GAGTC 3 cut(s) 52, 94, 277
Ppu21I YACGTR 1 cut(s) 201
PshBI ATTAAT 2 cut(s) 777, 960
Psp6I CCWGG 2 cut(s) 71, 912
PspGI CCWGG 2 cut(s) 71, 912
PspN4I GGNNCC 2 cut(s) 222, 241
PspPI GGNCC 2 cut(s) 239, 538
RsaI GTAC 6 cut(s) 128, 370, 801, 825, 966, 1001
RsaNI GTAC 6 cut(s) 127, 369, 800, 824, 965, 1000
SaqAI TTAA 7 cut(s) 351, 414, 680, 747, 777, 960, 995
Sau3AI GATC 2 cut(s) 294, 838
Sau96I GGNCC 2 cut(s) 239, 538
SchI GAGTC 3 cut(s) 52, 95, 277
ScrFI CCNGG 2 cut(s) 73, 914
SetI ASST 9 cut(s) 132, 203, 226, 343, 357, 506, 610, 822, 977
SfaNI GCATC 1 cut(s) 622
SinI GGWCC 2 cut(s) 239, 538
SmlI CTYRAG 5 cut(s) 350, 413, 718, 746, 760
SmoI CTYRAG 5 cut(s) 350, 413, 718, 746, 760
SphI GCATGC 1 cut(s) 405
Sse9I AATT 5 cut(s) 362, 491, 636, 766, 881
SseBI AGGCCT 2 cut(s) 562, 716
SsiI CCGC 1 cut(s) 927
SspMI CTAG 1 cut(s) 696
StuI AGGCCT 2 cut(s) 562, 716
StyD4I CCNGG 2 cut(s) 71, 912
StyI CCWWGG 1 cut(s) 700
TaaI ACNGT 5 cut(s) 53, 103, 474, 788, 799
TaiI ACGT 2 cut(s) 132, 203
TaqI TCGA 2 cut(s) 293, 941
TasI AATT 5 cut(s) 362, 491, 636, 766, 881
TatI WGTACW 4 cut(s) 799, 823, 964, 999
TfiI GAWTC 2 cut(s) 15, 21
Tru1I TTAA 7 cut(s) 351, 414, 680, 747, 777, 960, 995
Tru9I TTAA 7 cut(s) 351, 414, 680, 747, 777, 960, 995
TscAI CASTG 3 cut(s) 304, 741, 793
TseFI GTSAC 2 cut(s) 732, 770
Tsp45I GTSAC 2 cut(s) 732, 770
TspDTI ATGAA 4 cut(s) 561, 617, 882, 914
TspGWI ACGGA 2 cut(s) 62, 689
TspRI CASTG 3 cut(s) 304, 741, 793
Vha464I CTTAAG 3 cut(s) 350, 413, 746
VpaK11BI GGWCC 2 cut(s) 239, 538
VspI ATTAAT 2 cut(s) 777, 960
XapI RAATTY 3 cut(s) 362, 491, 881
XceI RCATGY 1 cut(s) 405
XcmI CCANNNNNNNNNTGG 1 cut(s) 79
XmnI GAANNNNTTC 1 cut(s) 608
XspI CTAG 1 cut(s) 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.