RLG00000012354

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000886
Physical Location & Seq
Reverse (-)
17782718 .. 17783731
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012354

Sequence Viewer

Length: 936 bp
ATGGATGAAGGAAGAAGAAGATGGGATGAGTTAGGTTTGGACTGTTTAACAAAGGTGTTCACAAGCGTTGGAATGGAGTCGCTGACTTTGGCTGTCCCTTTTGTATGCAAAACATGTGATGATGTTCAACTTAATAAAAAGTCCTTCGGTCCCTTTTACGACAAGTTTGTACATGAATATCGAATTGAAAAGAATAGTTTTTCCATCACTGCTTTTATAAAGTTGGTAGTCAATCGTAGCGATGGTAAGGCTTTTGAGCTTAAGCTACCTGGATTCTGTACAGAAGAAGCGTTGAGATTTGTTTCAGAAGCGTGCCCTGGTCTTAGAGTTTTGTCTTTGCGTGACGATTTGGAGCTTTTCAAGGTTTCTCAATTTATCCCACAAGTGATCGGAAAGTGGAAATCTTTGGAGTGCTTATATTTGGGAGGCAACATGGACATGATAGTGGAACTCGACTCGATAGGCGAAAATCACTTGAATACTGAAGCTTTTCAGGATCTTGTATCCTTTCCAATGCCCTATGGTCATACAATTTTGTGTGAAATCCTGCAGCAAATCTCCGTTCATTGCAAGCATTTTAGGGGTTTACATCTTTTCCATACCACTGTTGGTAAAGCCCAAGCAAAGGCAATTGTCGATTCGCTTCCTAGTCTCAACTTCTTAAGCTTGATAGAATGTTGCATTGAACGAGATACTCTTATTAACCTGTTGCAGGGCTGCAAAGAACTTGTGCATTTTGATGTCACATGTCAACGTGTTAGAGAGGATGATGAAGAAATATCAAAGCTTGCTTCCCACATTAAACAATTTATTCCGCCCCGTGGTCGATGTGCTTTTATTGCCTTTGAAGGGTTGAAGAATCATATTTTTTTTTACTGTCACAGAGAGCGTTATATGAACCTTATTGTAAACGGCCATTTCCTTGAAATGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

312

Amino Acids

35.66

Weight (kDa)

6.07

Isoelectric Point (pI)

47.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 218
AciI CCGC 1 cut(s) 815
AclWI GGATC 1 cut(s) 504
AcoI YGGCCR 1 cut(s) 913
AcuI CTGAAG 1 cut(s) 504
AfaI GTAC 2 cut(s) 171, 280
AfiI CCNNNNNNNGG 5 cut(s) 625, 712, 821, 849, 928
AflII CTTAAG 2 cut(s) 260, 661
AflIII ACRYGT 3 cut(s) 113, 746, 754
AgsI TTSAA 8 cut(s) 128, 188, 361, 478, 686, 848, 856, 926
AjnI CCWGG 2 cut(s) 268, 316
AluBI AGCT 6 cut(s) 259, 265, 355, 488, 666, 787
AluI AGCT 6 cut(s) 259, 265, 355, 488, 666, 787
Alw26I GTCTC 1 cut(s) 656
AlwI GGATC 1 cut(s) 504
AoxI GGCC 1 cut(s) 913
ApeKI GCWGC 2 cut(s) 550, 717
Asp700I GAANNNNTTC 1 cut(s) 489
AspS9I GGNCC 1 cut(s) 149
AvaII GGWCC 1 cut(s) 149
BaeGI GKGCMC 1 cut(s) 317
BbvI GCAGC 2 cut(s) 562, 704
BccI CCATC 3 cut(s) 15, 212, 236
BceAI ACGGC 1 cut(s) 928
BciT130I CCWGG 2 cut(s) 270, 318
BciVI GTATCC 1 cut(s) 514
BcoDI GTCTC 1 cut(s) 656
BfaI CTAG 1 cut(s) 648
BfmI CTRYAG 1 cut(s) 548
BfrI CTTAAG 2 cut(s) 260, 661
BfuI GTATCC 1 cut(s) 514
BisI GCNGC 2 cut(s) 551, 718
BlsI GCNGC 2 cut(s) 552, 719
Bme1390I CCNGG 2 cut(s) 270, 318
Bme18I GGWCC 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 149
BmiI GGNNCC 1 cut(s) 151
BmrFI CCNGG 2 cut(s) 270, 318
BsaJI CCNNGG 2 cut(s) 316, 820
Bsc4I CCNNNNNNNGG 5 cut(s) 625, 712, 821, 849, 928
Bse3DI GCAATG 1 cut(s) 565
BseBI CCWGG 2 cut(s) 270, 318
BseDI CCNNGG 2 cut(s) 316, 820
BseGI GGATG 3 cut(s) 10, 31, 772
BseLI CCNNNNNNNGG 5 cut(s) 625, 712, 821, 849, 928
BseMI GCAATG 1 cut(s) 565
BseSI GKGCMC 1 cut(s) 317
BseXI GCAGC 2 cut(s) 562, 704
BshFI GGCC 1 cut(s) 915
BslFI GGGAC 2 cut(s) 80, 135
BslI CCNNNNNNNGG 5 cut(s) 625, 712, 821, 849, 928
BsmAI GTCTC 1 cut(s) 656
BsmFI GGGAC 2 cut(s) 80, 135
BsnI GGCC 1 cut(s) 915
Bsp1286I GDGCHC 1 cut(s) 317
Bsp1407I TGTACA 2 cut(s) 169, 278
Bsp143I GATC 2 cut(s) 387, 496
BspACI CCGC 1 cut(s) 815
BspANI GGCC 1 cut(s) 915
BspLI GGNNCC 1 cut(s) 151
BspMAI CTGCAG 1 cut(s) 552
BspPI GGATC 1 cut(s) 504
BspTI CTTAAG 2 cut(s) 260, 661
BsrDI GCAATG 1 cut(s) 565
BsrGI TGTACA 2 cut(s) 169, 278
BssECI CCNNGG 2 cut(s) 316, 820
BssMI GATC 2 cut(s) 387, 496
Bst2UI CCWGG 2 cut(s) 270, 318
Bst4CI ACNGT 3 cut(s) 44, 607, 878
BstAFI CTTAAG 2 cut(s) 260, 661
BstAUI TGTACA 2 cut(s) 169, 278
BstC8I GCNNGC 3 cut(s) 313, 572, 789
BstDEI CTNAG 1 cut(s) 323
BstDSI CCRYGG 1 cut(s) 820
BstENI CCTNNNNNAGG 1 cut(s) 710
BstF5I GGATG 3 cut(s) 10, 31, 772
BstKTI GATC 2 cut(s) 390, 499
BstMAI GTCTC 1 cut(s) 656
BstMBI GATC 2 cut(s) 387, 496
BstMWI GCNNNNNNNGC 1 cut(s) 839
BstNI CCWGG 2 cut(s) 270, 318
BstNSI RCATGY 2 cut(s) 117, 750
BstSCI CCNGG 2 cut(s) 268, 316
BstSFI CTRYAG 1 cut(s) 548
BstSLI GKGCMC 1 cut(s) 317
BstV1I GCAGC 2 cut(s) 562, 704
BstX2I RGATCY 1 cut(s) 496
BstYI RGATCY 1 cut(s) 496
BsuI GTATCC 1 cut(s) 514
BsuRI GGCC 1 cut(s) 915
BtgI CCRYGG 1 cut(s) 820
BtgZI GCGATG 1 cut(s) 255
BtsCI GGATG 3 cut(s) 10, 31, 772
BtsI GCAGTG 1 cut(s) 207
BtsIMutI CAGTG 2 cut(s) 207, 603
Cac8I GCNNGC 3 cut(s) 313, 572, 789
Cfr13I GGNCC 1 cut(s) 149
Csp6I GTAC 2 cut(s) 170, 279
CviAII CATG 5 cut(s) 114, 173, 433, 439, 747
CviQI GTAC 2 cut(s) 170, 279
DdeI CTNAG 1 cut(s) 323
DpnI GATC 2 cut(s) 389, 498
DpnII GATC 2 cut(s) 387, 496
EaeI YGGCCR 1 cut(s) 913
EciI GGCGGA 1 cut(s) 804
Eco47I GGWCC 1 cut(s) 149
Eco57I CTGAAG 1 cut(s) 504
EcoNI CCTNNNNNAGG 1 cut(s) 710
EcoRII CCWGG 2 cut(s) 268, 316
FaeI CATG 5 cut(s) 117, 176, 436, 442, 750
FaqI GGGAC 2 cut(s) 80, 135
FatI CATG 5 cut(s) 113, 172, 432, 438, 746
Fnu4HI GCNGC 2 cut(s) 551, 718
FokI GGATG 3 cut(s) 17, 38, 779
Fsp4HI GCNGC 2 cut(s) 551, 718
FspBI CTAG 1 cut(s) 648
GluI GCNGC 2 cut(s) 551, 718
HaeIII GGCC 1 cut(s) 915
Hin1II CATG 5 cut(s) 117, 176, 436, 442, 750
HincII GTYRAC 1 cut(s) 752
HindII GTYRAC 1 cut(s) 752
HindIII AAGCTT 3 cut(s) 486, 664, 785
HinfI GANTC 5 cut(s) 77, 273, 455, 638, 859
Hpy166II GTNNAC 4 cut(s) 60, 587, 752, 910
Hpy188I TCNGA 2 cut(s) 307, 392
Hpy188III TCNNGA 1 cut(s) 494
Hpy8I GTNNAC 4 cut(s) 60, 587, 752, 910
HpyAV CCTTC 2 cut(s) 154, 842
HpyCH4III ACNGT 3 cut(s) 44, 607, 878
HpyCH4IV ACGT 1 cut(s) 754
HpyCH4V TGCA 7 cut(s) 108, 550, 570, 681, 712, 720, 733
HpyF10VI GCNNNNNNNGC 1 cut(s) 839
HpyF3I CTNAG 1 cut(s) 323
HpySE526I ACGT 1 cut(s) 754
Hsp92II CATG 5 cut(s) 117, 176, 436, 442, 750
Kzo9I GATC 2 cut(s) 387, 496
LmnI GCTCC 1 cut(s) 352
LpnPI CCDG 8 cut(s) 255, 282, 303, 330, 479, 560, 698, 719
Lsp1109I GCAGC 2 cut(s) 562, 704
MaeI CTAG 1 cut(s) 648
MaeII ACGT 1 cut(s) 754
MaeIII GTNAC 3 cut(s) 341, 742, 878
MalI GATC 2 cut(s) 389, 498
MboI GATC 2 cut(s) 387, 496
MboII GAAGA 6 cut(s) 24, 27, 30, 296, 785, 868
MfeI CAATTG 1 cut(s) 630
MflI RGATCY 1 cut(s) 496
MhlI GDGCHC 1 cut(s) 317
MluCI AATT 5 cut(s) 183, 371, 531, 630, 806
MlyI GAGTC 2 cut(s) 86, 449
MmeI TCCRAC 1 cut(s) 49
MnlI CCTC 2 cut(s) 419, 757
MroXI GAANNNNTTC 1 cut(s) 489
MseI TTAA 6 cut(s) 47, 132, 261, 662, 702, 801
MslI CAYNNNNRTG 3 cut(s) 437, 443, 738
MspCI CTTAAG 2 cut(s) 260, 661
MspR9I CCNGG 2 cut(s) 270, 318
MunI CAATTG 1 cut(s) 630
MvaI CCWGG 2 cut(s) 270, 318
MwoI GCNNNNNNNGC 1 cut(s) 839
NdeII GATC 2 cut(s) 387, 496
NlaIII CATG 5 cut(s) 117, 176, 436, 442, 750
NlaIV GGNNCC 1 cut(s) 151
NmuCI GTSAC 3 cut(s) 341, 742, 878
NspI RCATGY 2 cut(s) 117, 750
PciI ACATGT 2 cut(s) 113, 746
PdmI GAANNNNTTC 1 cut(s) 489
PfeI GAWTC 3 cut(s) 273, 638, 859
PkrI GCNGC 2 cut(s) 552, 719
PleI GAGTC 2 cut(s) 85, 449
PpsI GAGTC 2 cut(s) 85, 449
PscI ACATGT 2 cut(s) 113, 746
PsiI TTATAA 1 cut(s) 218
Psp6I CCWGG 2 cut(s) 268, 316
PspGI CCWGG 2 cut(s) 268, 316
PspN4I GGNNCC 1 cut(s) 151
PspPI GGNCC 1 cut(s) 149
PstI CTGCAG 1 cut(s) 552
PsuI RGATCY 1 cut(s) 496
RsaI GTAC 2 cut(s) 171, 280
RsaNI GTAC 2 cut(s) 170, 279
RseI CAYNNNNRTG 3 cut(s) 437, 443, 738
SaqAI TTAA 6 cut(s) 47, 132, 261, 662, 702, 801
SatI GCNGC 2 cut(s) 551, 718
Sau3AI GATC 2 cut(s) 387, 496
Sau96I GGNCC 1 cut(s) 149
SchI GAGTC 2 cut(s) 86, 449
ScrFI CCNGG 2 cut(s) 270, 318
SduI GDGCHC 1 cut(s) 317
SfcI CTRYAG 1 cut(s) 548
SinI GGWCC 1 cut(s) 149
SmiMI CAYNNNNRTG 3 cut(s) 437, 443, 738
SmlI CTYRAG 2 cut(s) 260, 661
SmoI CTYRAG 2 cut(s) 260, 661
Sse9I AATT 5 cut(s) 183, 371, 531, 630, 806
SsiI CCGC 1 cut(s) 815
SspMI CTAG 1 cut(s) 648
StyD4I CCNGG 2 cut(s) 268, 316
TaaI ACNGT 3 cut(s) 44, 607, 878
TaiI ACGT 1 cut(s) 757
TaqI TCGA 5 cut(s) 181, 453, 458, 636, 826
TaqII GACCGA 1 cut(s) 137
TasI AATT 5 cut(s) 183, 371, 531, 630, 806
TatI WGTACW 2 cut(s) 169, 278
TfiI GAWTC 3 cut(s) 273, 638, 859
Tru1I TTAA 6 cut(s) 47, 132, 261, 662, 702, 801
Tru9I TTAA 6 cut(s) 47, 132, 261, 662, 702, 801
TscAI CASTG 2 cut(s) 214, 610
TseFI GTSAC 3 cut(s) 341, 742, 878
TseI GCWGC 2 cut(s) 550, 717
Tsp45I GTSAC 3 cut(s) 341, 742, 878
TspDTI ATGAA 5 cut(s) 21, 189, 554, 786, 911
TspGWI ACGGA 1 cut(s) 550
TspRI CASTG 2 cut(s) 214, 610
Vha464I CTTAAG 2 cut(s) 260, 661
VpaK11BI GGWCC 1 cut(s) 149
XagI CCTNNNNNAGG 1 cut(s) 710
XceI RCATGY 2 cut(s) 117, 750
XcmI CCANNNNNNNNNTGG 1 cut(s) 605
XmnI GAANNNNTTC 1 cut(s) 489
XspI CTAG 1 cut(s) 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.