FvH4_3g09690

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000886
Physical Location & Seq
Forward (+)
5632915 .. 5633970
1056 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g09690.t1

Sequence Viewer

Length: 1056 bp
ATGTCGACGGCGAGCTTGGTCCAACAAGAAGCACACACTGAGAAGATGAGTGAAGAAGGAAGAAGAAGATGGGAGGAGATGAACATGGATTGCTTAGTAAATGCGTTTAGCAGAGCTGGAATGGAGTCACTGCTTTTGGCTCTCCCTTTTGTCTGTAAGTCCTGGCACGAAGCTACTCACAGTCCTTCATGCTGGACATGTCTTAAGTTTCCTGATCATAAACCCTATCCTTTGTTCGTTGATAAGGCTGAAGATATTGACACTCCACCTCGGAGTTTCGGCCCATTTTATGAAAAGTTTATAGAACAGTATGGAATCGATAAGAGTCGATTTTCAATCACTGCTTTTATAAAGATGGTGGTTGATCGGAGCAACGGGCAGGCTACTCTACTTAAGCTACCCCATTTCATTACAGAAGCAGCTCTGAGATATGTTTCAGATGCGTGTCCTCTGCTCAAACACTTAACGTTTGAGGATAATCTGTTGATTTTCAAGCATTATCAAATTCTCCCGGAAGTGATAGGAAAGTGGAAGTTTCTGGAGAGCTTGTTGTTAGGGGGCACCATGGTGCTGATTCACCAGCATTTTAATATTGGAAAGACCTTCAGTAAATATTTTTGGGGGTTGTTGACACTGGAAATGGAAACTCCGAGCTGTGATAATGTTTTGGAGAGAATTATAGTGCAGATTGGAACTCACTGCAAGCATTTTAGGCAGCTAAGTCTTGTACTAACCCATCTTCGTCAAGTCGAGGCATTGGCAATTGTGAACTTTCTGCCACACCTTGGGAACATATTGGCGGTCAGGTGCATCATCAAAAGGGATAGCATTCTCACAATTGCTCAGGGATGCAAAGAGCTTCAGGTTTTTCATGCCAAGGAATGTGCAGGCTTTGGAGAGGATGATGAAGAAGTATGCAAGCTTGCTGGTGAGACTGGTCAGATTGTATGTGAGGATTGTGTGCTCGATGATGAACTTCTGACTCTGTTGGTTATTCGCAGACCTACTTTATTGAGGAGATTAATGATTCTCATGTTCAGACTGCTGAGTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

352

Amino Acids

40.27

Weight (kDa)

6.31

Isoelectric Point (pI)

54.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 350
AasI GACNNNNNNGTC 1 cut(s) 1047
AccB1I GGYRCC 1 cut(s) 560
AccB7I CCANNNNNTGG 1 cut(s) 785
AccI GTMKAC 1 cut(s) 5
AciI CCGC 1 cut(s) 800
AclI AACGTT 1 cut(s) 467
AcsI RAATTY 1 cut(s) 504
AcuI CTGAAG 3 cut(s) 270, 589, 845
AfaI GTAC 1 cut(s) 729
AfiI CCNNNNNNNGG 1 cut(s) 785
AflII CTTAAG 2 cut(s) 203, 392
AflIII ACRYGT 1 cut(s) 197
AgsI TTSAA 2 cut(s) 336, 493
AjnI CCWGG 1 cut(s) 161
AleI CACNNNNGTG 1 cut(s) 566
Alw21I GWGCWC 1 cut(s) 966
Alw26I GTCTC 1 cut(s) 926
AoxI GGCC 1 cut(s) 280
ApeKI GCWGC 2 cut(s) 419, 715
ApoI RAATTY 1 cut(s) 504
AseI ATTAAT 1 cut(s) 1022
AspS9I GGNCC 2 cut(s) 19, 281
AsuC2I CCSGG 1 cut(s) 512
AsuHPI GGTGA 2 cut(s) 569, 941
AvaII GGWCC 1 cut(s) 19
BaeGI GKGCMC 1 cut(s) 563
BanI GGYRCC 1 cut(s) 560
Bbv12I GWGCWC 1 cut(s) 966
BbvI GCAGC 2 cut(s) 431, 727
BccI CCATC 3 cut(s) 63, 349, 744
BceAI ACGGC 1 cut(s) 24
BciT130I CCWGG 1 cut(s) 163
BclI TGATCA 1 cut(s) 214
BcnI CCSGG 1 cut(s) 512
BcoDI GTCTC 1 cut(s) 926
BfrI CTTAAG 2 cut(s) 203, 392
BisI GCNGC 2 cut(s) 420, 716
BlsI GCNGC 2 cut(s) 421, 717
Bme1390I CCNGG 2 cut(s) 163, 512
Bme18I GGWCC 1 cut(s) 19
BmgT120I GGNCC 2 cut(s) 19, 281
BmiI GGNNCC 1 cut(s) 562
BmrFI CCNGG 2 cut(s) 163, 512
BmsI GCATC 3 cut(s) 430, 819, 839
BpmI CTGGAG 1 cut(s) 560
Bpu10I CCTNAGC 1 cut(s) 843
BpuMI CCSGG 1 cut(s) 512
Bsa29I ATCGAT 1 cut(s) 318
BsaJI CCNNGG 4 cut(s) 269, 564, 784, 876
BsaXI ACNNNNNCTCC 2 cut(s) 533, 563
Bsc4I CCNNNNNNNGG 1 cut(s) 785
Bse1I ACTGG 2 cut(s) 639, 940
BseBI CCWGG 1 cut(s) 163
BseCI ATCGAT 1 cut(s) 318
BseDI CCNNGG 4 cut(s) 269, 564, 784, 876
BseGI GGATG 2 cut(s) 854, 907
BseLI CCNNNNNNNGG 1 cut(s) 785
BseMII CTCAG 4 cut(s) 30, 416, 857, 1037
BseNI ACTGG 2 cut(s) 639, 940
BseRI GAGGAG 2 cut(s) 89, 1030
BseSI GKGCMC 1 cut(s) 563
BseXI GCAGC 2 cut(s) 431, 727
BsgI GTGCAG 2 cut(s) 704, 906
BshFI GGCC 1 cut(s) 282
BshNI GGYRCC 1 cut(s) 560
BshVI ATCGAT 1 cut(s) 318
BsiHKAI GWGCWC 1 cut(s) 966
BsiSI CCGG 1 cut(s) 512
BslI CCNNNNNNNGG 1 cut(s) 785
BsmAI GTCTC 1 cut(s) 926
BsmI GAATGC 1 cut(s) 828
BsnI GGCC 1 cut(s) 282
Bsp1286I GDGCHC 2 cut(s) 563, 966
Bsp143I GATC 2 cut(s) 214, 364
Bsp19I CCATGG 1 cut(s) 564
BspACI CCGC 1 cut(s) 800
BspANI GGCC 1 cut(s) 282
BspCNI CTCAG 4 cut(s) 31, 417, 856, 1038
BspDI ATCGAT 1 cut(s) 318
BspLI GGNNCC 1 cut(s) 562
BspT107I GGYRCC 1 cut(s) 560
BspTI CTTAAG 2 cut(s) 203, 392
BsrI ACTGG 2 cut(s) 639, 940
BssECI CCNNGG 4 cut(s) 269, 564, 784, 876
BssMI GATC 2 cut(s) 214, 364
BssT1I CCWWGG 3 cut(s) 564, 784, 876
Bst2UI CCWGG 1 cut(s) 163
Bst4CI ACNGT 2 cut(s) 182, 309
BstAFI CTTAAG 2 cut(s) 203, 392
BstC8I GCNNGC 6 cut(s) 13, 381, 704, 889, 920, 924
BstDEI CTNAG 6 cut(s) 39, 94, 425, 719, 843, 1046
BstDSI CCRYGG 1 cut(s) 564
BstF5I GGATG 2 cut(s) 854, 907
BstKTI GATC 2 cut(s) 217, 367
BstMAI GTCTC 1 cut(s) 926
BstMBI GATC 2 cut(s) 214, 364
BstMWI GCNNNNNNNGC 1 cut(s) 712
BstNI CCWGG 1 cut(s) 163
BstNSI RCATGY 1 cut(s) 201
BstSCI CCNGG 2 cut(s) 161, 510
BstSLI GKGCMC 1 cut(s) 563
BstV1I GCAGC 2 cut(s) 431, 727
Bsu15I ATCGAT 1 cut(s) 318
BsuRI GGCC 1 cut(s) 282
BsuTUI ATCGAT 1 cut(s) 318
BtgI CCRYGG 1 cut(s) 564
BtsCI GGATG 2 cut(s) 854, 907
BtsI GCAGTG 3 cut(s) 128, 339, 697
BtsIMutI CAGTG 5 cut(s) 36, 128, 339, 632, 697
Cac8I GCNNGC 6 cut(s) 13, 381, 704, 889, 920, 924
Cfr13I GGNCC 2 cut(s) 19, 281
ClaI ATCGAT 1 cut(s) 318
Csp6I GTAC 1 cut(s) 728
CviAII CATG 6 cut(s) 85, 189, 198, 565, 872, 1033
CviQI GTAC 1 cut(s) 728
DdeI CTNAG 6 cut(s) 39, 94, 425, 719, 843, 1046
DpnI GATC 2 cut(s) 216, 366
DpnII GATC 2 cut(s) 214, 364
DrdI GACNNNNNNGTC 1 cut(s) 1047
DseDI GACNNNNNNGTC 1 cut(s) 1047
Eco130I CCWWGG 3 cut(s) 564, 784, 876
Eco47I GGWCC 1 cut(s) 19
Eco57I CTGAAG 3 cut(s) 270, 589, 845
EcoRII CCWGG 1 cut(s) 161
EcoT14I CCWWGG 3 cut(s) 564, 784, 876
ErhI CCWWGG 3 cut(s) 564, 784, 876
FaeI CATG 6 cut(s) 88, 192, 201, 568, 875, 1036
FatI CATG 6 cut(s) 84, 188, 197, 564, 871, 1032
FbaI TGATCA 1 cut(s) 214
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 2 cut(s) 420, 716
FokI GGATG 2 cut(s) 861, 914
Fsp4HI GCNGC 2 cut(s) 420, 716
GluI GCNGC 2 cut(s) 420, 716
GsuI CTGGAG 1 cut(s) 560
HaeIII GGCC 1 cut(s) 282
HapII CCGG 1 cut(s) 512
Hin1II CATG 6 cut(s) 88, 192, 201, 568, 875, 1036
HincII GTYRAC 2 cut(s) 6, 630
HindII GTYRAC 2 cut(s) 6, 630
HindIII AAGCTT 1 cut(s) 920
HinfI GANTC 7 cut(s) 125, 315, 325, 574, 982, 1027, 1048
HpaII CCGG 1 cut(s) 512
HphI GGTGA 2 cut(s) 569, 941
Hpy166II GTNNAC 3 cut(s) 6, 630, 769
Hpy188I TCNGA 8 cut(s) 273, 369, 426, 439, 651, 942, 981, 1040
Hpy188III TCNNGA 2 cut(s) 212, 539
Hpy8I GTNNAC 3 cut(s) 6, 630, 769
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 3 cut(s) 50, 195, 613
HpyCH4III ACNGT 2 cut(s) 182, 309
HpyCH4IV ACGT 1 cut(s) 467
HpyCH4V TGCA 6 cut(s) 685, 702, 810, 852, 887, 918
HpyF10VI GCNNNNNNNGC 1 cut(s) 712
HpyF3I CTNAG 6 cut(s) 39, 94, 425, 719, 843, 1046
HpySE526I ACGT 1 cut(s) 467
Hsp92II CATG 6 cut(s) 88, 192, 201, 568, 875, 1036
Ksp22I TGATCA 1 cut(s) 214
Kzo9I GATC 2 cut(s) 214, 364
LmnI GCTCC 1 cut(s) 369
Lsp1109I GCAGC 2 cut(s) 431, 727
LweI GCATC 3 cut(s) 430, 819, 839
MaeII ACGT 1 cut(s) 467
MaeIII GTNAC 1 cut(s) 126
MalI GATC 2 cut(s) 216, 366
MboI GATC 2 cut(s) 214, 364
MboII GAAGA 8 cut(s) 55, 65, 72, 75, 78, 263, 731, 920
MfeI CAATTG 2 cut(s) 762, 837
MhlI GDGCHC 2 cut(s) 563, 966
MluCI AATT 4 cut(s) 504, 675, 762, 837
MlyI GAGTC 3 cut(s) 134, 334, 976
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 8 cut(s) 67, 279, 459, 466, 745, 892, 946, 1008
MseI TTAA 5 cut(s) 204, 393, 464, 588, 1022
MslI CAYNNNNRTG 1 cut(s) 566
MspCI CTTAAG 2 cut(s) 203, 392
MspI CCGG 1 cut(s) 512
MspR9I CCNGG 2 cut(s) 163, 512
MunI CAATTG 2 cut(s) 762, 837
Mva1269I GAATGC 1 cut(s) 828
MvaI CCWGG 1 cut(s) 163
MwoI GCNNNNNNNGC 1 cut(s) 712
NciI CCSGG 1 cut(s) 512
NcoI CCATGG 1 cut(s) 564
NdeII GATC 2 cut(s) 214, 364
NlaIII CATG 6 cut(s) 88, 192, 201, 568, 875, 1036
NlaIV GGNNCC 1 cut(s) 562
NmuCI GTSAC 1 cut(s) 126
NspI RCATGY 1 cut(s) 201
OliI CACNNNNGTG 1 cut(s) 566
PciI ACATGT 1 cut(s) 197
PctI GAATGC 1 cut(s) 828
PfeI GAWTC 3 cut(s) 315, 574, 1027
PflMI CCANNNNNTGG 1 cut(s) 785
PfoI TCCNGGA 1 cut(s) 510
PkrI GCNGC 2 cut(s) 421, 717
PleI GAGTC 3 cut(s) 133, 333, 976
PpsI GAGTC 3 cut(s) 133, 333, 976
PscI ACATGT 1 cut(s) 197
PshBI ATTAAT 1 cut(s) 1022
PsiI TTATAA 1 cut(s) 350
Psp1406I AACGTT 1 cut(s) 467
Psp6I CCWGG 1 cut(s) 161
PspGI CCWGG 1 cut(s) 161
PspN4I GGNNCC 1 cut(s) 562
PspPI GGNCC 2 cut(s) 19, 281
RsaI GTAC 1 cut(s) 729
RsaNI GTAC 1 cut(s) 728
RseI CAYNNNNRTG 1 cut(s) 566
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 5 cut(s) 204, 393, 464, 588, 1022
SatI GCNGC 2 cut(s) 420, 716
Sau3AI GATC 2 cut(s) 214, 364
Sau96I GGNCC 2 cut(s) 19, 281
SchI GAGTC 3 cut(s) 134, 334, 976
ScrFI CCNGG 2 cut(s) 163, 512
SduI GDGCHC 2 cut(s) 563, 966
SfaNI GCATC 3 cut(s) 430, 819, 839
SinI GGWCC 1 cut(s) 19
SmiMI CAYNNNNRTG 1 cut(s) 566
SmlI CTYRAG 2 cut(s) 203, 392
SmoI CTYRAG 2 cut(s) 203, 392
Sse9I AATT 4 cut(s) 504, 675, 762, 837
SsiI CCGC 1 cut(s) 800
SspI AATATT 2 cut(s) 592, 614
StyD4I CCNGG 2 cut(s) 161, 510
StyI CCWWGG 3 cut(s) 564, 784, 876
TaaI ACNGT 2 cut(s) 182, 309
TaiI ACGT 1 cut(s) 470
TaqI TCGA 5 cut(s) 5, 318, 328, 750, 966
TasI AATT 4 cut(s) 504, 675, 762, 837
TatI WGTACW 1 cut(s) 727
TfiI GAWTC 3 cut(s) 315, 574, 1027
Tru1I TTAA 5 cut(s) 204, 393, 464, 588, 1022
Tru9I TTAA 5 cut(s) 204, 393, 464, 588, 1022
TscAI CASTG 5 cut(s) 43, 135, 346, 639, 704
TseFI GTSAC 1 cut(s) 126
TseI GCWGC 2 cut(s) 419, 715
Tsp45I GTSAC 1 cut(s) 126
TspDTI ATGAA 7 cut(s) 95, 177, 306, 397, 860, 921, 987
TspRI CASTG 5 cut(s) 43, 135, 346, 639, 704
Van91I CCANNNNNTGG 1 cut(s) 785
Vha464I CTTAAG 2 cut(s) 203, 392
VpaK11BI GGWCC 1 cut(s) 19
VspI ATTAAT 1 cut(s) 1022
XapI RAATTY 1 cut(s) 504
XceI RCATGY 1 cut(s) 201
XmiI GTMKAC 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.