Rh2BG091300

Leucine-rich repeats, typical (most populated) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000886
Physical Location & Seq
Forward (+)
7122587 .. 7123651
1065 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG091300.1

Sequence Viewer

Length: 1065 bp
ATGTTGACGGACGGCGTCGTTTTGAAGAAGGCGAGATTGGTCGAAGAAGAAGTGCAGAGTGAGAAGGAGGAGCGGAGAAGATGGGAGGAGATGGACATGGATTGCTTAGCGAATGTGTTTAGCAAAGCTGGAATAGAGTCACTGGTTTTGGATGTCCCTTTTGTCTGTAAGTCCTGGTACAGAGCTAGCCTCAGTCCTATATGCTGGACAAGTCTTTACTTTCCAGACAATATTCCTTCTCCTTTGTTCGTTAATAATGTTGAAGAAATTGGACCTCAAAGTTTCGGTACATTTTACGATAAGTTTGTAGATGAATATGGAATCGATAAGAGTCGATTTTCGATTACTGGTTTTGTAAAGTTGGTAGTGGAACGGAGCAAAGGGAAGGCTACTCGACTCAAGCTACCCATGTGTAGTACAGAAACATGTTTGAGATATGTTTCAGATGCATGTCCTCTGCTTAAAACTTTAATGTTCATGGATGATCCGGTGATTTTCAAGAGTTCTCAAATTCTTCCGGAAGTGATTGGAAAGTGGAAGTTTTTGGAGACCTTGCATTTGGGGGGCAGCTTGTTGCTCGTTGGTGAGCAGTTTAGCAAGGGAAAATACTTGAGTAAAGATTTCCGGGAGTTGTTGACATCGGAAAGTCCGAGCTGCTATAATGTTTTGGAGAGAATCCTAGTGCAGATTGGCACTCACTGCAAGCATTTTAGGTGGTTAAGTCTTGAACTAGTCCCTTTTGGTCAAGTTGAGGCATTGACAATTGTGAACTTCCTGCCACACCTTCGGGGCATAAAATTGGCGGGCGGGTGCCTCATCGAAAGGGATAGCCTTTTCACAATATTTCGGGGATGCAAAGAGCTCCAGCTTTTTTATGCCGATGACTGTGTAGGCTTTGAAGATGATGATGAAGAAATATACAACCTTGCTTGCCAGACTTGTAAGGTTGTATGTAAGGGTTGTGTAGCCCATGATGAATTAGAATCAGAGTTAGGTGACTTGGCTCGAGACGTACCTACTTTATTGAGGAAATTTGTATTCACCAGCTTGCGTATGCGGGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 ubiquitin

Protein Analysis

354

Amino Acids

40.35

Weight (kDa)

5.39

Isoelectric Point (pI)

51.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 810
AccBSI CCGCTC 1 cut(s) 73
AccIII TCCGGA 1 cut(s) 517
AciI CCGC 4 cut(s) 73, 803, 807, 1057
AclWI GGATC 1 cut(s) 479
AcsI RAATTY 2 cut(s) 510, 1031
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 4 cut(s) 179, 289, 418, 1014
AflIII ACRYGT 1 cut(s) 425
AgsI TTSAA 5 cut(s) 25, 263, 499, 728, 899
AhlI ACTAGT 1 cut(s) 730
AjnI CCWGG 1 cut(s) 173
AjuI GAANNNNNNNTTGG 2 cut(s) 20, 52
AluBI AGCT 8 cut(s) 128, 185, 403, 570, 654, 862, 868, 1047
AluI AGCT 8 cut(s) 128, 185, 403, 570, 654, 862, 868, 1047
Alw21I GWGCWC 1 cut(s) 864
Alw26I GTCTC 2 cut(s) 542, 1002
AlwI GGATC 1 cut(s) 479
Ama87I CYCGRG 1 cut(s) 1005
Aor13HI TCCGGA 1 cut(s) 517
ApeKI GCWGC 2 cut(s) 567, 654
ApoI RAATTY 2 cut(s) 510, 1031
ArsI GACNNNNNNTTYG 2 cut(s) 541, 573
AspS9I GGNCC 1 cut(s) 272
AsuC2I CCSGG 1 cut(s) 626
AsuHPI GGTGA 4 cut(s) 502, 596, 1007, 1033
AsuNHI GCTAGC 1 cut(s) 185
AvaI CYCGRG 1 cut(s) 1005
AvaII GGWCC 1 cut(s) 272
BanI GGYRCC 1 cut(s) 810
BanII GRGCYC 1 cut(s) 864
Bbv12I GWGCWC 1 cut(s) 864
BbvI GCAGC 2 cut(s) 579, 641
BccI CCATC 2 cut(s) 75, 85
BceAI ACGGC 1 cut(s) 28
BciT130I CCWGG 1 cut(s) 175
BcnI CCSGG 1 cut(s) 626
BcoDI GTCTC 2 cut(s) 542, 1002
BcuI ACTAGT 1 cut(s) 730
BfaI CTAG 3 cut(s) 186, 680, 731
BisI GCNGC 2 cut(s) 568, 655
BlpI GCTNAGC 1 cut(s) 106
BlsI GCNGC 2 cut(s) 569, 656
Bme1390I CCNGG 2 cut(s) 175, 626
Bme18I GGWCC 1 cut(s) 272
BmeT110I CYCGRG 1 cut(s) 1005
BmgT120I GGNCC 1 cut(s) 272
BmiI GGNNCC 1 cut(s) 812
BmrFI CCNGG 2 cut(s) 175, 626
BmsI GCATC 2 cut(s) 436, 842
BmtI GCTAGC 1 cut(s) 189
BplI GAGNNNNNCTC 2 cut(s) 174, 206
BpmI CTGGAG 1 cut(s) 848
Bpu1102I GCTNAGC 1 cut(s) 106
BpuEI CTTGAG 2 cut(s) 383, 631
BpuMI CCSGG 1 cut(s) 626
Bsa29I ATCGAT 1 cut(s) 324
BsaHI GRCGYC 1 cut(s) 15
BsaI GGTCTC 1 cut(s) 542
BsaWI WCCGGW 2 cut(s) 487, 517
Bse1I ACTGG 2 cut(s) 147, 352
BseAI TCCGGA 1 cut(s) 517
BseBI CCWGG 1 cut(s) 175
BseCI ATCGAT 1 cut(s) 324
BseGI GGATG 3 cut(s) 157, 487, 857
BseMII CTCAG 1 cut(s) 205
BseNI ACTGG 2 cut(s) 147, 352
BseRI GAGGAG 2 cut(s) 83, 101
BseXI GCAGC 2 cut(s) 579, 641
BsgI GTGCAG 2 cut(s) 74, 704
BshNI GGYRCC 1 cut(s) 810
BshVI ATCGAT 1 cut(s) 324
BsiHKAI GWGCWC 1 cut(s) 864
BsiHKCI CYCGRG 1 cut(s) 1005
BsiSI CCGG 3 cut(s) 488, 518, 625
BslFI GGGAC 2 cut(s) 140, 719
BsmAI GTCTC 2 cut(s) 542, 1002
BsmBI CGTCTC 1 cut(s) 1002
BsmFI GGGAC 2 cut(s) 140, 719
Bso31I GGTCTC 1 cut(s) 542
BsoBI CYCGRG 1 cut(s) 1005
Bsp1286I GDGCHC 1 cut(s) 864
Bsp13I TCCGGA 1 cut(s) 517
Bsp143I GATC 1 cut(s) 484
Bsp1720I GCTNAGC 1 cut(s) 106
BspACI CCGC 4 cut(s) 73, 803, 807, 1057
BspCNI CTCAG 1 cut(s) 204
BspDI ATCGAT 1 cut(s) 324
BspEI TCCGGA 1 cut(s) 517
BspLI GGNNCC 1 cut(s) 812
BspOI GCTAGC 1 cut(s) 189
BspPI GGATC 1 cut(s) 479
BspT107I GGYRCC 1 cut(s) 810
BspTNI GGTCTC 1 cut(s) 542
BsrBI CCGCTC 1 cut(s) 73
BsrI ACTGG 2 cut(s) 147, 352
BssMI GATC 1 cut(s) 484
BssNI GRCGYC 1 cut(s) 15
Bst2UI CCWGG 1 cut(s) 175
Bst4CI ACNGT 1 cut(s) 887
BstACI GRCGYC 1 cut(s) 15
BstAPI GCANNNNNTGC 1 cut(s) 699
BstC8I GCNNGC 5 cut(s) 187, 704, 805, 931, 1049
BstDEI CTNAG 2 cut(s) 106, 191
BstF5I GGATG 3 cut(s) 157, 487, 857
BstKTI GATC 1 cut(s) 487
BstMAI GTCTC 2 cut(s) 542, 1002
BstMBI GATC 1 cut(s) 484
BstMWI GCNNNNNNNGC 1 cut(s) 699
BstNI CCWGG 1 cut(s) 175
BstNSI RCATGY 2 cut(s) 429, 453
BstSCI CCNGG 2 cut(s) 173, 624
BstV1I GCAGC 2 cut(s) 579, 641
Bsu15I ATCGAT 1 cut(s) 324
BsuTUI ATCGAT 1 cut(s) 324
BtsCI GGATG 3 cut(s) 157, 487, 857
BtsI GCAGTG 1 cut(s) 697
BtsIMutI CAGTG 2 cut(s) 140, 697
Cac8I GCNNGC 5 cut(s) 187, 704, 805, 931, 1049
Cfr13I GGNCC 1 cut(s) 272
ClaI ATCGAT 1 cut(s) 324
CseI GACGC 1 cut(s) 4
Csp6I GTAC 4 cut(s) 178, 288, 417, 1013
CviAII CATG 6 cut(s) 97, 409, 426, 450, 478, 971
CviQI GTAC 4 cut(s) 178, 288, 417, 1013
DdeI CTNAG 2 cut(s) 106, 191
DpnI GATC 1 cut(s) 486
DpnII GATC 1 cut(s) 484
Ecl136II GAGCTC 1 cut(s) 862
Eco24I GRGCYC 1 cut(s) 864
Eco31I GGTCTC 1 cut(s) 542
Eco47I GGWCC 1 cut(s) 272
Eco53kI GAGCTC 1 cut(s) 862
Eco88I CYCGRG 1 cut(s) 1005
EcoICRI GAGCTC 1 cut(s) 862
EcoRII CCWGG 1 cut(s) 173
EcoT22I ATGCAT 1 cut(s) 451
EcoT38I GRGCYC 1 cut(s) 864
Esp3I CGTCTC 1 cut(s) 1002
FaeI CATG 6 cut(s) 100, 412, 429, 453, 481, 974
FaqI GGGAC 2 cut(s) 140, 719
FatI CATG 6 cut(s) 96, 408, 425, 449, 477, 970
FauI CCCGC 3 cut(s) 796, 800, 1050
Fnu4HI GCNGC 2 cut(s) 568, 655
FokI GGATG 3 cut(s) 164, 494, 864
FriOI GRGCYC 1 cut(s) 864
Fsp4HI GCNGC 2 cut(s) 568, 655
FspBI CTAG 3 cut(s) 186, 680, 731
GluI GCNGC 2 cut(s) 568, 655
GsuI CTGGAG 1 cut(s) 848
HapII CCGG 3 cut(s) 488, 518, 625
HgaI GACGC 1 cut(s) 4
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 6 cut(s) 100, 412, 429, 453, 481, 974
HincII GTYRAC 2 cut(s) 6, 636
HindII GTYRAC 2 cut(s) 6, 636
HinfI GANTC 6 cut(s) 137, 321, 331, 396, 675, 983
HpaII CCGG 3 cut(s) 488, 518, 625
HphI GGTGA 4 cut(s) 502, 596, 1007, 1033
Hpy166II GTNNAC 3 cut(s) 6, 636, 769
Hpy188I TCNGA 4 cut(s) 445, 643, 651, 988
Hpy188III TCNNGA 5 cut(s) 224, 499, 518, 725, 1007
Hpy8I GTNNAC 3 cut(s) 6, 636, 769
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 5 cut(s) 22, 58, 246, 379, 794
HpyCH4III ACNGT 1 cut(s) 887
HpyCH4IV ACGT 1 cut(s) 1011
HpyCH4V TGCA 6 cut(s) 55, 449, 556, 685, 702, 855
HpyF10VI GCNNNNNNNGC 1 cut(s) 699
HpyF3I CTNAG 2 cut(s) 106, 191
HpySE526I ACGT 1 cut(s) 1011
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 6 cut(s) 100, 412, 429, 453, 481, 974
Kpn2I TCCGGA 1 cut(s) 517
Kzo9I GATC 1 cut(s) 484
LmnI GCTCC 3 cut(s) 70, 375, 867
Lsp1109I GCAGC 2 cut(s) 579, 641
LweI GCATC 2 cut(s) 436, 842
MaeI CTAG 3 cut(s) 186, 680, 731
MaeII ACGT 1 cut(s) 1011
MaeIII GTNAC 2 cut(s) 138, 995
MalI GATC 1 cut(s) 486
MbiI CCGCTC 1 cut(s) 73
MboI GATC 1 cut(s) 484
MboII GAAGA 8 cut(s) 37, 56, 59, 90, 275, 506, 911, 923
MfeI CAATTG 1 cut(s) 762
MhlI GDGCHC 1 cut(s) 864
MluCI AATT 6 cut(s) 267, 510, 762, 797, 977, 1031
MlyI GAGTC 3 cut(s) 146, 340, 390
MnlI CCTC 8 cut(s) 61, 79, 200, 285, 465, 745, 824, 1020
Mph1103I ATGCAT 1 cut(s) 451
MroI TCCGGA 1 cut(s) 517
MseI TTAA 5 cut(s) 252, 462, 470, 719, 1063
MspI CCGG 3 cut(s) 488, 518, 625
MspR9I CCNGG 2 cut(s) 175, 626
MunI CAATTG 1 cut(s) 762
MvaI CCWGG 1 cut(s) 175
MwoI GCNNNNNNNGC 1 cut(s) 699
NciI CCSGG 1 cut(s) 626
NdeII GATC 1 cut(s) 484
NheI GCTAGC 1 cut(s) 185
NlaIII CATG 6 cut(s) 100, 412, 429, 453, 481, 974
NlaIV GGNNCC 1 cut(s) 812
NmuCI GTSAC 2 cut(s) 138, 995
NsiI ATGCAT 1 cut(s) 451
NspI RCATGY 2 cut(s) 429, 453
PaeR7I CTCGAG 1 cut(s) 1005
PciI ACATGT 1 cut(s) 425
PcsI WCGNNNNNNNCGW 1 cut(s) 647
PfeI GAWTC 3 cut(s) 321, 675, 983
PflFI GACNNNGTC 1 cut(s) 14
PfoI TCCNGGA 1 cut(s) 624
PkrI GCNGC 2 cut(s) 569, 656
PleI GAGTC 3 cut(s) 145, 339, 390
PpsI GAGTC 3 cut(s) 145, 339, 390
PscI ACATGT 1 cut(s) 425
Psp124BI GAGCTC 1 cut(s) 864
Psp6I CCWGG 1 cut(s) 173
PspGI CCWGG 1 cut(s) 173
PspN4I GGNNCC 1 cut(s) 812
PspPI GGNCC 1 cut(s) 272
PsyI GACNNNGTC 1 cut(s) 14
RsaI GTAC 4 cut(s) 179, 289, 418, 1014
RsaNI GTAC 4 cut(s) 178, 288, 417, 1013
SacI GAGCTC 1 cut(s) 864
SaqAI TTAA 5 cut(s) 252, 462, 470, 719, 1063
SatI GCNGC 2 cut(s) 568, 655
Sau3AI GATC 1 cut(s) 484
Sau96I GGNCC 1 cut(s) 272
SchI GAGTC 3 cut(s) 146, 340, 390
ScrFI CCNGG 2 cut(s) 175, 626
SduI GDGCHC 1 cut(s) 864
SfaNI GCATC 2 cut(s) 436, 842
Sfr274I CTCGAG 1 cut(s) 1005
SinI GGWCC 1 cut(s) 272
SlaI CTCGAG 1 cut(s) 1005
SmlI CTYRAG 3 cut(s) 398, 610, 1005
SmoI CTYRAG 3 cut(s) 398, 610, 1005
SpeI ACTAGT 1 cut(s) 730
Sse9I AATT 6 cut(s) 267, 510, 762, 797, 977, 1031
SsiI CCGC 4 cut(s) 73, 803, 807, 1057
SspI AATATT 2 cut(s) 232, 843
SspMI CTAG 3 cut(s) 186, 680, 731
SstI GAGCTC 1 cut(s) 864
StyD4I CCNGG 2 cut(s) 173, 624
TaaI ACNGT 1 cut(s) 887
TaiI ACGT 1 cut(s) 1014
TaqI TCGA 7 cut(s) 42, 324, 334, 341, 394, 819, 1006
TasI AATT 6 cut(s) 267, 510, 762, 797, 977, 1031
TatI WGTACW 1 cut(s) 416
TfiI GAWTC 3 cut(s) 321, 675, 983
Tru1I TTAA 5 cut(s) 252, 462, 470, 719, 1063
Tru9I TTAA 5 cut(s) 252, 462, 470, 719, 1063
TscAI CASTG 2 cut(s) 147, 704
TseFI GTSAC 2 cut(s) 138, 995
TseI GCWGC 2 cut(s) 567, 654
Tsp45I GTSAC 2 cut(s) 138, 995
TspDTI ATGAA 4 cut(s) 327, 466, 924, 990
TspGWI ACGGA 2 cut(s) 23, 388
TspRI CASTG 2 cut(s) 147, 704
Tth111I GACNNNGTC 1 cut(s) 14
VpaK11BI GGWCC 1 cut(s) 272
XapI RAATTY 2 cut(s) 510, 1031
XceI RCATGY 2 cut(s) 429, 453
XhoI CTCGAG 1 cut(s) 1005
XspI CTAG 3 cut(s) 186, 680, 731
Zsp2I ATGCAT 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.