FvH4_6g09400

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000886
Physical Location & Seq
Forward (+)
5579150 .. 5580408
1259 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g09400.t1

Sequence Viewer

Length: 1029 bp
ATGTTCACAAGGCCGATGCTCAAGAGGAAGGAGGAGGAGGAGGAGGAGGAGTCGGCTTTATTCTGGCCGCTGAGGAAGAAGAACGGCGTCGTTCCGGACTCTGAGAAGATGCATGAACGAAGATGGGAGAATTTATGCATGGACTGCATAACCAAGGTGTTCACAAGAGTTGGAATGGAGTCACTTATTCTGTCACTCCCTTTTGTATGCACGTCATGGTACGCAGCAACCCTGGATCCTTTATGCTGGCAATACCTCTATTTTCCAGACCTCGAACCTTCTCTTTTAACTGGCCCTAACTCGACTAAACTAGAAAGCTACGGTCCATTCTACGATAAGTTTGTAGAGGAATACCATATTGAAAGAAATCGATCGCGATTCTCCATCACTGCTTTCATAAAGCTAGTAGTCAACAGAAGCAACGGAAAAGCTCTTGAGCTGAAGATGCCTGGATTTTCTACAGAAGAAGCTTTGAGATTTGTCTCAGACGCATGCCCTAACCTTAGGGTTTTGAATTTGCCCGATGACTTGCAGATTTTCAAGCATTCAGGGATTATTCCGGAAGTAATTGGAAAGTGGAAATCTCTGGAGCAATTGCATCTAGGTAGCAACCTCAAGAAAATAAATGTTTTGGTAGATGTTGCTTCACCTCGCTACTTCAGTGAATATTTACAGTCGTCGTTGCTGGCTTGCGTTTGCCATGACAATTTGAACAAAATCCTGGAGCAGATCGGCATACACTGCAAGCATTTCATGGGTCTACAACTTGAGATTGAAAAGGTTGATATAGCTACGGCATCGGAGATCGTGAAATATTTGCCAGATATTAAGTTCTTGAAGTTGATACAGTGTTACATTCAAAACGATGGCATTGTTACACTATTGAACGGCTGCAAAGAGCTCGAGACTTTCTATGTTAGGGGGGATCGTCACAGTTACCGTTACCATGGTTTCTTGAGGAGAAAGATCATAGGCGTATACGAACTTGGAGCACCTCATGATTGGAAAGTCATCAGAACGATGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

343

Amino Acids

39.78

Weight (kDa)

7.12

Isoelectric Point (pI)

57.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 760, 978
AccII CGCG 1 cut(s) 376
AccIII TCCGGA 2 cut(s) 94, 559
AciI CCGC 1 cut(s) 68
AclWI GGATC 3 cut(s) 230, 243, 933
AcoI YGGCCR 1 cut(s) 65
AcsI RAATTY 2 cut(s) 130, 514
AcuI CTGAAG 2 cut(s) 461, 643
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 1 cut(s) 221
AgsI TTSAA 8 cut(s) 362, 514, 541, 712, 776, 838, 860, 886
AjiI CACGTC 1 cut(s) 213
AjnI CCWGG 3 cut(s) 231, 448, 720
AluBI AGCT 7 cut(s) 318, 403, 431, 439, 470, 791, 901
AluI AGCT 7 cut(s) 318, 403, 431, 439, 470, 791, 901
Alw21I GWGCWC 2 cut(s) 903, 994
Alw26I GTCTC 2 cut(s) 487, 899
AlwI GGATC 3 cut(s) 230, 243, 933
Ama87I CYCGRG 1 cut(s) 902
Aor13HI TCCGGA 2 cut(s) 94, 559
AoxI GGCC 3 cut(s) 11, 65, 292
ApeKI GCWGC 2 cut(s) 224, 891
ApoI RAATTY 2 cut(s) 130, 514
AspS9I GGNCC 2 cut(s) 293, 323
AsuHPI GGTGA 1 cut(s) 639
AvaI CYCGRG 1 cut(s) 902
AvaII GGWCC 1 cut(s) 323
AxyI CCTNAGG 1 cut(s) 503
BamHI GGATCC 1 cut(s) 235
BanII GRGCYC 1 cut(s) 903
Bbv12I GWGCWC 2 cut(s) 903, 994
BbvCI CCTCAGC 1 cut(s) 71
BbvI GCAGC 2 cut(s) 236, 878
BccI CCATC 4 cut(s) 117, 392, 860, 1015
BceAI ACGGC 3 cut(s) 100, 810, 904
BcgI CGANNNNNNTGC 2 cut(s) 883, 917
BciT130I CCWGG 3 cut(s) 233, 450, 722
BcoDI GTCTC 2 cut(s) 487, 899
BfaI CTAG 3 cut(s) 311, 404, 602
BfmI CTRYAG 1 cut(s) 459
BisI GCNGC 3 cut(s) 68, 225, 892
BlsI GCNGC 3 cut(s) 69, 226, 893
Bme1390I CCNGG 3 cut(s) 233, 450, 722
Bme18I GGWCC 1 cut(s) 323
BmeT110I CYCGRG 1 cut(s) 902
BmgBI CACGTC 1 cut(s) 213
BmgT120I GGNCC 2 cut(s) 293, 323
BmiI GGNNCC 1 cut(s) 237
BmrFI CCNGG 3 cut(s) 233, 450, 722
BmsI GCATC 5 cut(s) 6, 99, 435, 607, 806
BpmI CTGGAG 2 cut(s) 608, 743
Bpu10I CCTNAGC 1 cut(s) 71
BpuEI CTTGAG 5 cut(s) 5, 455, 599, 788, 976
Bsa29I ATCGAT 1 cut(s) 370
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 3 cut(s) 153, 231, 946
BsaWI WCCGGW 2 cut(s) 94, 559
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bse1I ACTGG 1 cut(s) 295
Bse21I CCTNAGG 1 cut(s) 503
BseAI TCCGGA 2 cut(s) 94, 559
BseBI CCWGG 3 cut(s) 233, 450, 722
BseCI ATCGAT 1 cut(s) 370
BseDI CCNNGG 3 cut(s) 153, 231, 946
BseMII CTCAG 3 cut(s) 62, 93, 498
BseNI ACTGG 1 cut(s) 295
BseRI GAGGAG 7 cut(s) 47, 50, 53, 56, 59, 62, 973
BseXI GCAGC 2 cut(s) 236, 878
Bsh1236I CGCG 1 cut(s) 376
Bsh1285I CGRYCG 1 cut(s) 374
BshFI GGCC 3 cut(s) 13, 67, 294
BshVI ATCGAT 1 cut(s) 370
BsiEI CGRYCG 1 cut(s) 374
BsiHKAI GWGCWC 2 cut(s) 903, 994
BsiHKCI CYCGRG 1 cut(s) 902
BsiSI CCGG 2 cut(s) 95, 560
BsmAI GTCTC 2 cut(s) 487, 899
BsmI GAATGC 1 cut(s) 544
BsnI GGCC 3 cut(s) 13, 67, 294
BsoBI CYCGRG 1 cut(s) 902
Bsp1286I GDGCHC 2 cut(s) 903, 994
Bsp13I TCCGGA 2 cut(s) 94, 559
Bsp143I GATC 6 cut(s) 235, 371, 729, 804, 925, 966
Bsp19I CCATGG 1 cut(s) 946
Bsp68I TCGCGA 1 cut(s) 376
BspACI CCGC 1 cut(s) 68
BspANI GGCC 3 cut(s) 13, 67, 294
BspCNI CTCAG 3 cut(s) 63, 94, 497
BspDI ATCGAT 1 cut(s) 370
BspEI TCCGGA 2 cut(s) 94, 559
BspFNI CGCG 1 cut(s) 376
BspHI TCATGA 1 cut(s) 997
BspLI GGNNCC 1 cut(s) 237
BspPI GGATC 3 cut(s) 230, 243, 933
BsrI ACTGG 1 cut(s) 295
BssECI CCNNGG 3 cut(s) 153, 231, 946
BssMI GATC 6 cut(s) 235, 371, 729, 804, 925, 966
BssNAI GTATAC 1 cut(s) 979
BssNI GRCGYC 1 cut(s) 87
BssT1I CCWWGG 2 cut(s) 153, 946
Bst1107I GTATAC 1 cut(s) 979
Bst2UI CCWGG 3 cut(s) 233, 450, 722
Bst4CI ACNGT 5 cut(s) 323, 675, 849, 935, 941
BstACI GRCGYC 1 cut(s) 87
BstAPI GCANNNNNTGC 2 cut(s) 144, 741
BstC8I GCNNGC 5 cut(s) 248, 493, 687, 691, 746
BstDEI CTNAG 4 cut(s) 71, 102, 484, 503
BstDSI CCRYGG 1 cut(s) 946
BstFNI CGCG 1 cut(s) 376
BstKTI GATC 6 cut(s) 238, 374, 732, 807, 928, 969
BstMAI GTCTC 2 cut(s) 487, 899
BstMBI GATC 6 cut(s) 235, 371, 729, 804, 925, 966
BstMCI CGRYCG 1 cut(s) 374
BstMWI GCNNNNNNNGC 3 cut(s) 144, 445, 741
BstNI CCWGG 3 cut(s) 233, 450, 722
BstNSI RCATGY 1 cut(s) 495
BstSCI CCNGG 3 cut(s) 231, 448, 720
BstSFI CTRYAG 1 cut(s) 459
BstUI CGCG 1 cut(s) 376
BstV1I GCAGC 2 cut(s) 236, 878
BstX2I RGATCY 1 cut(s) 235
BstYI RGATCY 1 cut(s) 235
BstZ17I GTATAC 1 cut(s) 979
Bsu15I ATCGAT 1 cut(s) 370
Bsu36I CCTNAGG 1 cut(s) 503
BsuRI GGCC 3 cut(s) 13, 67, 294
BsuTUI ATCGAT 1 cut(s) 370
BtgI CCRYGG 1 cut(s) 946
BtrI CACGTC 1 cut(s) 213
BtsI GCAGTG 2 cut(s) 387, 739
BtsIMutI CAGTG 4 cut(s) 387, 667, 739, 854
BtuMI TCGCGA 1 cut(s) 376
Cac8I GCNNGC 5 cut(s) 248, 493, 687, 691, 746
CciI TCATGA 1 cut(s) 997
Cfr13I GGNCC 2 cut(s) 293, 323
ClaI ATCGAT 1 cut(s) 370
CseI GACGC 2 cut(s) 76, 497
Csp6I GTAC 1 cut(s) 220
CviAII CATG 8 cut(s) 113, 139, 216, 492, 701, 754, 947, 998
CviQI GTAC 1 cut(s) 220
DdeI CTNAG 4 cut(s) 71, 102, 484, 503
DpnI GATC 6 cut(s) 237, 373, 731, 806, 927, 968
DpnII GATC 6 cut(s) 235, 371, 729, 804, 925, 966
EaeI YGGCCR 1 cut(s) 65
Ecl136II GAGCTC 1 cut(s) 901
Eco130I CCWWGG 2 cut(s) 153, 946
Eco24I GRGCYC 1 cut(s) 903
Eco47I GGWCC 1 cut(s) 323
Eco53kI GAGCTC 1 cut(s) 901
Eco57I CTGAAG 2 cut(s) 461, 643
Eco81I CCTNAGG 1 cut(s) 503
Eco88I CYCGRG 1 cut(s) 902
EcoICRI GAGCTC 1 cut(s) 901
EcoRII CCWGG 3 cut(s) 231, 448, 720
EcoT14I CCWWGG 2 cut(s) 153, 946
EcoT22I ATGCAT 2 cut(s) 114, 140
EcoT38I GRGCYC 1 cut(s) 903
ErhI CCWWGG 2 cut(s) 153, 946
FaeI CATG 8 cut(s) 116, 142, 219, 495, 704, 757, 950, 1001
FatI CATG 8 cut(s) 112, 138, 215, 491, 700, 753, 946, 997
FblI GTMKAC 2 cut(s) 760, 978
Fnu4HI GCNGC 3 cut(s) 68, 225, 892
FriOI GRGCYC 1 cut(s) 903
Fsp4HI GCNGC 3 cut(s) 68, 225, 892
FspBI CTAG 3 cut(s) 311, 404, 602
GluI GCNGC 3 cut(s) 68, 225, 892
GsuI CTGGAG 2 cut(s) 608, 743
HaeIII GGCC 3 cut(s) 13, 67, 294
HapII CCGG 2 cut(s) 95, 560
HgaI GACGC 2 cut(s) 76, 497
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 8 cut(s) 116, 142, 219, 495, 704, 757, 950, 1001
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HindIII AAGCTT 1 cut(s) 468
HinfI GANTC 4 cut(s) 50, 98, 179, 378
HpaII CCGG 2 cut(s) 95, 560
HphI GGTGA 1 cut(s) 639
Hpy166II GTNNAC 5 cut(s) 6, 162, 412, 761, 979
Hpy188I TCNGA 4 cut(s) 103, 487, 802, 1016
Hpy8I GTNNAC 5 cut(s) 6, 162, 412, 761, 979
Hpy99I CGWCG 2 cut(s) 92, 682
HpyAV CCTTC 2 cut(s) 22, 288
HpyCH4III ACNGT 5 cut(s) 323, 675, 849, 935, 941
HpyCH4IV ACGT 1 cut(s) 212
HpyCH4V TGCA 8 cut(s) 112, 138, 147, 210, 532, 598, 744, 894
HpyF10VI GCNNNNNNNGC 3 cut(s) 144, 445, 741
HpyF3I CTNAG 4 cut(s) 71, 102, 484, 503
HpySE526I ACGT 1 cut(s) 212
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 8 cut(s) 116, 142, 219, 495, 704, 757, 950, 1001
Kpn2I TCCGGA 2 cut(s) 94, 559
Kzo9I GATC 6 cut(s) 235, 371, 729, 804, 925, 966
LmnI GCTCC 3 cut(s) 589, 724, 989
Lsp1109I GCAGC 2 cut(s) 236, 878
LweI GCATC 5 cut(s) 6, 99, 435, 607, 806
MaeI CTAG 3 cut(s) 311, 404, 602
MaeII ACGT 1 cut(s) 212
MaeIII GTNAC 7 cut(s) 180, 192, 851, 874, 929, 935, 941
MalI GATC 6 cut(s) 237, 373, 731, 806, 927, 968
MboI GATC 6 cut(s) 235, 371, 729, 804, 925, 966
MboII GAAGA 6 cut(s) 88, 91, 118, 132, 454, 476
MfeI CAATTG 1 cut(s) 593
MflI RGATCY 1 cut(s) 235
MhlI GDGCHC 2 cut(s) 903, 994
MluCI AATT 5 cut(s) 130, 514, 567, 593, 706
MlyI GAGTC 3 cut(s) 59, 92, 188
MmeI TCCRAC 1 cut(s) 151
Mph1103I ATGCAT 2 cut(s) 114, 140
MroI TCCGGA 2 cut(s) 94, 559
MseI TTAA 2 cut(s) 287, 828
MspA1I CMGCKG 1 cut(s) 70
MspI CCGG 2 cut(s) 95, 560
MspR9I CCNGG 3 cut(s) 233, 450, 722
MunI CAATTG 1 cut(s) 593
Mva1269I GAATGC 1 cut(s) 544
MvaI CCWGG 3 cut(s) 233, 450, 722
MvnI CGCG 1 cut(s) 376
MwoI GCNNNNNNNGC 3 cut(s) 144, 445, 741
NcoI CCATGG 1 cut(s) 946
NdeII GATC 6 cut(s) 235, 371, 729, 804, 925, 966
NlaIII CATG 8 cut(s) 116, 142, 219, 495, 704, 757, 950, 1001
NlaIV GGNNCC 1 cut(s) 237
NmuCI GTSAC 3 cut(s) 180, 192, 929
NruI TCGCGA 1 cut(s) 376
NsiI ATGCAT 2 cut(s) 114, 140
NspI RCATGY 1 cut(s) 495
PaeI GCATGC 1 cut(s) 495
PaeR7I CTCGAG 1 cut(s) 902
PagI TCATGA 1 cut(s) 997
PctI GAATGC 1 cut(s) 544
PfeI GAWTC 1 cut(s) 378
PfoI TCCNGGA 1 cut(s) 720
PkrI GCNGC 3 cut(s) 69, 226, 893
Ple19I CGATCG 1 cut(s) 374
PleI GAGTC 3 cut(s) 58, 92, 187
PpsI GAGTC 3 cut(s) 58, 92, 187
Psp124BI GAGCTC 1 cut(s) 903
Psp6I CCWGG 3 cut(s) 231, 448, 720
PspGI CCWGG 3 cut(s) 231, 448, 720
PspN4I GGNNCC 1 cut(s) 237
PspPI GGNCC 2 cut(s) 293, 323
PsuI RGATCY 1 cut(s) 235
PvuI CGATCG 1 cut(s) 374
RruI TCGCGA 1 cut(s) 376
RsaI GTAC 1 cut(s) 221
RsaNI GTAC 1 cut(s) 220
SacI GAGCTC 1 cut(s) 903
SaqAI TTAA 2 cut(s) 287, 828
SatI GCNGC 3 cut(s) 68, 225, 892
Sau3AI GATC 6 cut(s) 235, 371, 729, 804, 925, 966
Sau96I GGNCC 2 cut(s) 293, 323
SchI GAGTC 3 cut(s) 59, 92, 188
ScrFI CCNGG 3 cut(s) 233, 450, 722
SduI GDGCHC 2 cut(s) 903, 994
SfaNI GCATC 5 cut(s) 6, 99, 435, 607, 806
SfcI CTRYAG 1 cut(s) 459
Sfr274I CTCGAG 1 cut(s) 902
SinI GGWCC 1 cut(s) 323
SlaI CTCGAG 1 cut(s) 902
SmlI CTYRAG 6 cut(s) 20, 434, 614, 767, 902, 955
SmoI CTYRAG 6 cut(s) 20, 434, 614, 767, 902, 955
SphI GCATGC 1 cut(s) 495
Sse9I AATT 5 cut(s) 130, 514, 567, 593, 706
SsiI CCGC 1 cut(s) 68
SspI AATATT 2 cut(s) 668, 815
SspMI CTAG 3 cut(s) 311, 404, 602
SstI GAGCTC 1 cut(s) 903
StyD4I CCNGG 3 cut(s) 231, 448, 720
StyI CCWWGG 2 cut(s) 153, 946
TaaI ACNGT 5 cut(s) 323, 675, 849, 935, 941
TaiI ACGT 1 cut(s) 215
TaqI TCGA 4 cut(s) 273, 302, 370, 903
TasI AATT 5 cut(s) 130, 514, 567, 593, 706
TauI GCSGC 1 cut(s) 70
TfiI GAWTC 1 cut(s) 378
Tru1I TTAA 2 cut(s) 287, 828
Tru9I TTAA 2 cut(s) 287, 828
TscAI CASTG 4 cut(s) 394, 667, 746, 854
TseFI GTSAC 3 cut(s) 180, 192, 929
TseI GCWGC 2 cut(s) 224, 891
Tsp45I GTSAC 3 cut(s) 180, 192, 929
TspDTI ATGAA 3 cut(s) 129, 385, 742
TspGWI ACGGA 1 cut(s) 438
TspRI CASTG 4 cut(s) 394, 667, 746, 854
VpaK11BI GGWCC 1 cut(s) 323
XapI RAATTY 2 cut(s) 130, 514
XceI RCATGY 1 cut(s) 495
XhoI CTCGAG 1 cut(s) 902
XmiI GTMKAC 2 cut(s) 760, 978
XspI CTAG 3 cut(s) 311, 404, 602
Zsp2I ATGCAT 2 cut(s) 114, 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.