FvH4_3g05270

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000886
Physical Location & Seq
Forward (+)
3051290 .. 3052567
1278 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g05270.t1

Sequence Viewer

Length: 813 bp
ATGTCGGCGGACGGCGTCGTTTTGAAGAAGGCGAGGCTGGTCCCACAAGAAACACAGACTGAGAAGAAGGAGATGAGTGAAGGAAGAAGAAGATGGGAGGAGATGAACATGGATTGCTTAGCATATGCGTTTAGCAAAGCTGGAATGGAGTCACTGCTTTTGGCGGTCCCTTTTGTCTGTAAGTCCTGGCACAAAGCTGCCCTTAATCCTAAATGTTGGACATGTCTTGAGTTTCCTGATCATAGACCCTATCCTGTGTTCGTTAATACTGTTGAAGAAATCGATACTCCACCTCGGAGTTTCGGCACGTTTTATGATAAGTTTATACATATGGTGGTTGATAAGAGCAAAGGGAAGGCTACGGAACTCGAGCTACCCATGTGTGGTACAGAAGCAGCTCTGAGATATGTTGCAGATGCGTGTCCTCTGCTCAGAGCCTTGACGTTTGTCGATGATCTGGTGATTTTCAAGCATTCTCAGATTCTCCCGGAAGAGTTGTTGGCACCGGAAACTCCGAGCTGCTATAATGTTTTGGAGAGGATTATAGTGCAGATCGGCACTCACTGCAAGCAGTTTAGGTTCTTGAATCTTATACTAATCCATCTGCTTCAAGTTGAAGCATTGGCAATTGTGAACTTTCTGCCACACCTTCGGACCATATTAGCAGGCAGGTGCATCATGGAAAGGGATAGCGTTCTCACAGTAGTTCGGGGATGCAAAGAGCTTGATATTTTTTATGCCAAGGAATGTGCAGGCTTTGCACAGGATGATGAAGAAATTTACAAGCTTGCTCGCCAGACTGTTTTCACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

271

Amino Acids

30.82

Weight (kDa)

6.02

Isoelectric Point (pI)

57.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 660
Acc36I ACCTGC 1 cut(s) 660
AccB1I GGYRCC 1 cut(s) 502
AciI CCGC 2 cut(s) 8, 164
AcsI RAATTY 1 cut(s) 777
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 1 cut(s) 388
AfiI CCNNNNNNNGG 1 cut(s) 383
AflIII ACRYGT 1 cut(s) 221
AgsI TTSAA 6 cut(s) 25, 275, 469, 586, 611, 617
AjnI CCWGG 1 cut(s) 185
AluBI AGCT 7 cut(s) 140, 197, 373, 398, 519, 724, 787
AluI AGCT 7 cut(s) 140, 197, 373, 398, 519, 724, 787
Ama87I CYCGRG 1 cut(s) 368
ApeKI GCWGC 3 cut(s) 197, 395, 519
ApoI RAATTY 1 cut(s) 777
AspS9I GGNCC 3 cut(s) 40, 166, 654
AsuC2I CCSGG 1 cut(s) 488
AsuHPI GGTGA 1 cut(s) 472
AvaI CYCGRG 1 cut(s) 368
AvaII GGWCC 3 cut(s) 40, 166, 654
BanI GGYRCC 1 cut(s) 502
BbvI GCAGC 3 cut(s) 184, 407, 506
BccI CCATC 2 cut(s) 87, 609
BceAI ACGGC 1 cut(s) 28
BciT130I CCWGG 1 cut(s) 187
BclI TGATCA 1 cut(s) 238
BcnI CCSGG 1 cut(s) 488
BfuAI ACCTGC 1 cut(s) 660
BisI GCNGC 3 cut(s) 198, 396, 520
BlpI GCTNAGC 1 cut(s) 118
BlsI GCNGC 3 cut(s) 199, 397, 521
Bme1390I CCNGG 2 cut(s) 187, 488
Bme18I GGWCC 3 cut(s) 40, 166, 654
BmeT110I CYCGRG 1 cut(s) 368
BmgT120I GGNCC 3 cut(s) 40, 166, 654
BmiI GGNNCC 3 cut(s) 42, 168, 504
BmrFI CCNGG 2 cut(s) 187, 488
BmsI GCATC 3 cut(s) 406, 684, 704
BoxI GACNNNNGTC 1 cut(s) 446
Bpu1102I GCTNAGC 1 cut(s) 118
BpuEI CTTGAG 1 cut(s) 248
BpuMI CCSGG 1 cut(s) 488
Bsa29I ATCGAT 1 cut(s) 282
BsaHI GRCGYC 1 cut(s) 15
BsaJI CCNNGG 2 cut(s) 293, 741
BsaWI WCCGGW 1 cut(s) 505
Bsc4I CCNNNNNNNGG 1 cut(s) 383
BseBI CCWGG 1 cut(s) 187
BseCI ATCGAT 1 cut(s) 282
BseDI CCNNGG 2 cut(s) 293, 741
BseGI GGATG 2 cut(s) 719, 772
BseLI CCNNNNNNNGG 1 cut(s) 383
BseMII CTCAG 4 cut(s) 51, 392, 445, 491
BseRI GAGGAG 1 cut(s) 113
BseXI GCAGC 3 cut(s) 184, 407, 506
BsgI GTGCAG 2 cut(s) 569, 771
BshNI GGYRCC 1 cut(s) 502
BshVI ATCGAT 1 cut(s) 282
BsiHKCI CYCGRG 1 cut(s) 368
BsiSI CCGG 2 cut(s) 488, 506
BslFI GGGAC 2 cut(s) 26, 152
BslI CCNNNNNNNGG 1 cut(s) 383
BsmFI GGGAC 2 cut(s) 26, 152
BsmI GAATGC 1 cut(s) 472
BsoBI CYCGRG 1 cut(s) 368
Bsp143I GATC 3 cut(s) 238, 454, 552
Bsp1720I GCTNAGC 1 cut(s) 118
BspACI CCGC 2 cut(s) 8, 164
BspCNI CTCAG 4 cut(s) 52, 393, 444, 490
BspDI ATCGAT 1 cut(s) 282
BspLI GGNNCC 3 cut(s) 42, 168, 504
BspMI ACCTGC 1 cut(s) 660
BspT107I GGYRCC 1 cut(s) 502
BssECI CCNNGG 2 cut(s) 293, 741
BssMI GATC 3 cut(s) 238, 454, 552
BssNI GRCGYC 1 cut(s) 15
BssT1I CCWWGG 1 cut(s) 741
Bst2UI CCWGG 1 cut(s) 187
Bst4CI ACNGT 3 cut(s) 271, 703, 802
Bst6I CTCTTC 1 cut(s) 486
BstACI GRCGYC 1 cut(s) 15
BstAPI GCANNNNNTGC 2 cut(s) 564, 758
BstC8I GCNNGC 5 cut(s) 569, 667, 754, 789, 793
BstDEI CTNAG 5 cut(s) 60, 118, 401, 431, 477
BstF5I GGATG 2 cut(s) 719, 772
BstKTI GATC 3 cut(s) 241, 457, 555
BstMBI GATC 3 cut(s) 238, 454, 552
BstMWI GCNNNNNNNGC 2 cut(s) 564, 758
BstNI CCWGG 1 cut(s) 187
BstNSI RCATGY 1 cut(s) 225
BstPAI GACNNNNGTC 1 cut(s) 446
BstSCI CCNGG 2 cut(s) 185, 486
BstV1I GCAGC 3 cut(s) 184, 407, 506
Bsu15I ATCGAT 1 cut(s) 282
BsuTUI ATCGAT 1 cut(s) 282
BtsCI GGATG 2 cut(s) 719, 772
BtsI GCAGTG 2 cut(s) 152, 562
BtsIMutI CAGTG 2 cut(s) 152, 562
BveI ACCTGC 1 cut(s) 660
Cac8I GCNNGC 5 cut(s) 569, 667, 754, 789, 793
Cfr13I GGNCC 3 cut(s) 40, 166, 654
ClaI ATCGAT 1 cut(s) 282
CseI GACGC 1 cut(s) 4
Csp6I GTAC 1 cut(s) 387
CviAII CATG 4 cut(s) 109, 222, 379, 679
CviQI GTAC 1 cut(s) 387
DdeI CTNAG 5 cut(s) 60, 118, 401, 431, 477
DpnI GATC 3 cut(s) 240, 456, 554
DpnII GATC 3 cut(s) 238, 454, 552
Eam1104I CTCTTC 1 cut(s) 486
EarI CTCTTC 1 cut(s) 486
EciI GGCGGA 1 cut(s) 23
Eco130I CCWWGG 1 cut(s) 741
Eco47I GGWCC 3 cut(s) 40, 166, 654
Eco88I CYCGRG 1 cut(s) 368
EcoRII CCWGG 1 cut(s) 185
EcoT14I CCWWGG 1 cut(s) 741
ErhI CCWWGG 1 cut(s) 741
FaeI CATG 4 cut(s) 112, 225, 382, 682
FalI AAGNNNNNCTT 2 cut(s) 186, 218
FaqI GGGAC 2 cut(s) 26, 152
FatI CATG 4 cut(s) 108, 221, 378, 678
FauNDI CATATG 2 cut(s) 124, 330
FbaI TGATCA 1 cut(s) 238
Fnu4HI GCNGC 3 cut(s) 198, 396, 520
FokI GGATG 2 cut(s) 726, 779
Fsp4HI GCNGC 3 cut(s) 198, 396, 520
GluI GCNGC 3 cut(s) 198, 396, 520
HapII CCGG 2 cut(s) 488, 506
HgaI GACGC 1 cut(s) 4
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 4 cut(s) 112, 225, 382, 682
HindIII AAGCTT 1 cut(s) 785
HinfI GANTC 3 cut(s) 149, 481, 586
HpaII CCGG 2 cut(s) 488, 506
HphI GGTGA 1 cut(s) 472
Hpy166II GTNNAC 1 cut(s) 634
Hpy188I TCNGA 6 cut(s) 297, 402, 434, 480, 516, 654
Hpy188III TCNNGA 3 cut(s) 227, 236, 583
Hpy8I GTNNAC 1 cut(s) 634
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 5 cut(s) 22, 61, 74, 349, 659
HpyCH4III ACNGT 3 cut(s) 271, 703, 802
HpyCH4IV ACGT 2 cut(s) 308, 443
HpyCH4V TGCA 7 cut(s) 413, 550, 567, 675, 717, 752, 761
HpyF10VI GCNNNNNNNGC 2 cut(s) 564, 758
HpyF3I CTNAG 5 cut(s) 60, 118, 401, 431, 477
HpySE526I ACGT 2 cut(s) 308, 443
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 4 cut(s) 112, 225, 382, 682
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 3 cut(s) 238, 454, 552
Lsp1109I GCAGC 3 cut(s) 184, 407, 506
LweI GCATC 3 cut(s) 406, 684, 704
MaeII ACGT 2 cut(s) 308, 443
MaeIII GTNAC 1 cut(s) 150
MalI GATC 3 cut(s) 240, 456, 554
MboI GATC 3 cut(s) 238, 454, 552
MboII GAAGA 8 cut(s) 37, 76, 96, 99, 102, 287, 503, 785
MfeI CAATTG 1 cut(s) 627
MluCI AATT 2 cut(s) 627, 777
MlyI GAGTC 1 cut(s) 158
MmeI TCCRAC 1 cut(s) 197
MnlI CCTC 5 cut(s) 27, 91, 303, 435, 531
MseI TTAA 2 cut(s) 204, 264
MspI CCGG 2 cut(s) 488, 506
MspR9I CCNGG 2 cut(s) 187, 488
MunI CAATTG 1 cut(s) 627
Mva1269I GAATGC 1 cut(s) 472
MvaI CCWGG 1 cut(s) 187
MwoI GCNNNNNNNGC 2 cut(s) 564, 758
NciI CCSGG 1 cut(s) 488
NdeI CATATG 2 cut(s) 124, 330
NdeII GATC 3 cut(s) 238, 454, 552
NlaIII CATG 4 cut(s) 112, 225, 382, 682
NlaIV GGNNCC 3 cut(s) 42, 168, 504
NmuCI GTSAC 1 cut(s) 150
NspI RCATGY 1 cut(s) 225
PaeR7I CTCGAG 1 cut(s) 368
PaqCI CACCTGC 1 cut(s) 660
PciI ACATGT 1 cut(s) 221
PctI GAATGC 1 cut(s) 472
PfeI GAWTC 2 cut(s) 481, 586
PflFI GACNNNGTC 1 cut(s) 14
PfoI TCCNGGA 1 cut(s) 486
PkrI GCNGC 3 cut(s) 199, 397, 521
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
PscI ACATGT 1 cut(s) 221
PshAI GACNNNNGTC 1 cut(s) 446
Psp6I CCWGG 1 cut(s) 185
PspGI CCWGG 1 cut(s) 185
PspN4I GGNNCC 3 cut(s) 42, 168, 504
PspPI GGNCC 3 cut(s) 40, 166, 654
PspXI VCTCGAGB 1 cut(s) 368
PsrI GAACNNNNNNTAC 2 cut(s) 357, 389
PsyI GACNNNGTC 1 cut(s) 14
RsaI GTAC 1 cut(s) 388
RsaNI GTAC 1 cut(s) 387
SaqAI TTAA 2 cut(s) 204, 264
SatI GCNGC 3 cut(s) 198, 396, 520
Sau3AI GATC 3 cut(s) 238, 454, 552
Sau96I GGNCC 3 cut(s) 40, 166, 654
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 2 cut(s) 187, 488
SfaNI GCATC 3 cut(s) 406, 684, 704
Sfr274I CTCGAG 1 cut(s) 368
SinI GGWCC 3 cut(s) 40, 166, 654
SlaI CTCGAG 1 cut(s) 368
SmlI CTYRAG 2 cut(s) 227, 368
SmoI CTYRAG 2 cut(s) 227, 368
Sse9I AATT 2 cut(s) 627, 777
SsiI CCGC 2 cut(s) 8, 164
StyD4I CCNGG 2 cut(s) 185, 486
StyI CCWWGG 1 cut(s) 741
TaaI ACNGT 3 cut(s) 271, 703, 802
TaiI ACGT 2 cut(s) 311, 446
TaqI TCGA 3 cut(s) 282, 369, 450
TasI AATT 2 cut(s) 627, 777
TfiI GAWTC 2 cut(s) 481, 586
Tru1I TTAA 2 cut(s) 204, 264
Tru9I TTAA 2 cut(s) 204, 264
TscAI CASTG 2 cut(s) 159, 569
TseFI GTSAC 1 cut(s) 150
TseI GCWGC 3 cut(s) 197, 395, 519
Tsp45I GTSAC 1 cut(s) 150
TspDTI ATGAA 2 cut(s) 119, 786
TspGWI ACGGA 1 cut(s) 377
TspRI CASTG 2 cut(s) 159, 569
Tth111I GACNNNGTC 1 cut(s) 14
VpaK11BI GGWCC 3 cut(s) 40, 166, 654
XapI RAATTY 1 cut(s) 777
XceI RCATGY 1 cut(s) 225
XhoI CTCGAG 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.