Rh6BG486300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000886
Physical Location & Seq
Forward (+)
69106276 .. 69107578
1303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG486300.1

Sequence Viewer

Length: 957 bp
ATGTGTTTTCAAGAGTTAAAATGGAGTCTCTGTTTTTGGCTGTTCCTTTTGTCTGCAAATCATGGTACGTACAAAACAAGTCTCAATCCTTTGTGCTGGAAACGTCTCTGGTTTCCAGATTTTATACCTTATCCTTTGTTTACTGATAAGGCCGAGGATCGGCTTCAACCTGCTCAGAGTTTTGGTCCCTTTTACGATCAGTTTGTTGATGAATATCGAATAAACAAGACTCGGTTCTCTATCGATGCTTTTGTGAAGTTGGTAGTCGATCGTAGCAATGGAATTGCCACTTCTCTCATACTACCTGAATTCTGTACGGAAGAAGCATTGAGATATGTATCAGATGCATGCCCTCTCCTTTGGGGAGTTTGGTTCACAGATGACCTGGTGCTTTTCAAGAATTCTCAAATTATTGCACAAGTGATTGGCAAGTGGAAATTTTTGGAGTGCTTGTATTTGGGGAGTAGCTTGGTGAAAATTATGCCGCAAAGAAGATTGAGTAAAAAACATTTGAGTGAACATTTTAAAGTGTTGTTGACAGTGGAAAATCCACCCTGCTATAATGTTCTGGATAGAATCCTTGTGCAGATTGCCACTCACTGCAAACATTTTAAGGAATTATCTATTTCTTCCTGCAATGTTGGTGAAATTGAGGCATCCACAATTGTGAAGTTGCTGCCAAACCTTAAAAAGTTGGATGTGAGCAGTTCTTGCATTGATCGAGATAGTGTTGTTAAACTATTGCAGGGCCTTAAAAAGGTGGTGCGTTTTCATATCACAAGATGTGAAGGTTTTGAAGAGAGTGATGAAGAAATATCAAAGCTTGGTTCCCAGGTCAAACACTTTTTATGCCAAGATTGTGCAAACTGTGATTTATCTTGGTTTAAAATAATCGTTAAACAGAGGAAGGCTATTTTCAGGACATTGGAGTTATCAAATCAGATTAATGAGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

318

Amino Acids

36.84

Weight (kDa)

8.32

Isoelectric Point (pI)

40.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 178
AciI CCGC 1 cut(s) 485
AclWI GGATC 1 cut(s) 165
AcsI RAATTY 3 cut(s) 308, 400, 437
AfaI GTAC 3 cut(s) 67, 71, 316
AfiI CCNNNNNNNGG 2 cut(s) 159, 757
AgsI TTSAA 4 cut(s) 11, 167, 397, 797
AjnI CCWGG 2 cut(s) 384, 831
AleI CACNNNNGTG 1 cut(s) 665
AluBI AGCT 2 cut(s) 468, 823
AluI AGCT 2 cut(s) 468, 823
Alw26I GTCTC 3 cut(s) 32, 86, 110
AlwI GGATC 1 cut(s) 165
AoxI GGCC 2 cut(s) 150, 748
ApeKI GCWGC 1 cut(s) 676
ApoI RAATTY 3 cut(s) 308, 400, 437
AseI ATTAAT 1 cut(s) 945
AspS9I GGNCC 2 cut(s) 185, 748
AsuHPI GGTGA 2 cut(s) 484, 656
AvaII GGWCC 1 cut(s) 185
BbvI GCAGC 1 cut(s) 663
BciT130I CCWGG 2 cut(s) 386, 833
BcoDI GTCTC 3 cut(s) 32, 86, 110
BfuAI ACCTGC 1 cut(s) 178
BisI GCNGC 2 cut(s) 485, 677
BlsI GCNGC 2 cut(s) 486, 678
Bme1390I CCNGG 2 cut(s) 386, 833
Bme18I GGWCC 1 cut(s) 185
BmgT120I GGNCC 2 cut(s) 185, 748
BmiI GGNNCC 2 cut(s) 187, 829
BmrFI CCNGG 2 cut(s) 386, 833
BmsI GCATC 3 cut(s) 235, 334, 665
Bsa29I ATCGAT 1 cut(s) 243
BsaAI YACGTR 1 cut(s) 69
BsaBI GATNNNNATC 2 cut(s) 213, 337
BsaJI CCNNGG 2 cut(s) 153, 831
BsaXI ACNNNNNCTCC 4 cut(s) 16, 46, 437, 467
Bsc4I CCNNNNNNNGG 2 cut(s) 159, 757
Bse3DI GCAATG 2 cut(s) 283, 643
Bse8I GATNNNNATC 2 cut(s) 213, 337
BseBI CCWGG 2 cut(s) 386, 833
BseCI ATCGAT 1 cut(s) 243
BseDI CCNNGG 2 cut(s) 153, 831
BseGI GGATG 2 cut(s) 656, 703
BseJI GATNNNNATC 2 cut(s) 213, 337
BseLI CCNNNNNNNGG 2 cut(s) 159, 757
BseMI GCAATG 2 cut(s) 283, 643
BseMII CTCAG 1 cut(s) 188
BseXI GCAGC 1 cut(s) 663
BsgI GTGCAG 1 cut(s) 605
Bsh1285I CGRYCG 1 cut(s) 271
BshFI GGCC 2 cut(s) 152, 750
BshVI ATCGAT 1 cut(s) 243
BsiEI CGRYCG 1 cut(s) 271
BslFI GGGAC 1 cut(s) 171
BslI CCNNNNNNNGG 2 cut(s) 159, 757
BsmAI GTCTC 3 cut(s) 32, 86, 110
BsmBI CGTCTC 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 171
BsnI GGCC 2 cut(s) 152, 750
Bsp143I GATC 4 cut(s) 157, 196, 268, 718
BspACI CCGC 1 cut(s) 485
BspANI GGCC 2 cut(s) 152, 750
BspCNI CTCAG 1 cut(s) 187
BspDI ATCGAT 1 cut(s) 243
BspLI GGNNCC 2 cut(s) 187, 829
BspMI ACCTGC 1 cut(s) 178
BspPI GGATC 1 cut(s) 165
BsrDI GCAATG 2 cut(s) 283, 643
BssECI CCNNGG 2 cut(s) 153, 831
BssMI GATC 4 cut(s) 157, 196, 268, 718
Bst2UI CCWGG 2 cut(s) 386, 833
Bst4CI ACNGT 2 cut(s) 541, 869
Bst6I CTCTTC 1 cut(s) 792
BstAPI GCANNNNNTGC 1 cut(s) 711
BstBAI YACGTR 1 cut(s) 69
BstC8I GCNNGC 1 cut(s) 349
BstDEI CTNAG 1 cut(s) 174
BstENI CCTNNNNNAGG 1 cut(s) 755
BstF5I GGATG 2 cut(s) 656, 703
BstKTI GATC 4 cut(s) 160, 199, 271, 721
BstMAI GTCTC 3 cut(s) 32, 86, 110
BstMBI GATC 4 cut(s) 157, 196, 268, 718
BstMCI CGRYCG 1 cut(s) 271
BstMWI GCNNNNNNNGC 1 cut(s) 711
BstNI CCWGG 2 cut(s) 386, 833
BstNSI RCATGY 1 cut(s) 351
BstSCI CCNGG 2 cut(s) 384, 831
BstSNI TACGTA 1 cut(s) 69
BstV1I GCAGC 1 cut(s) 663
Bsu15I ATCGAT 1 cut(s) 243
BsuRI GGCC 2 cut(s) 152, 750
BsuTUI ATCGAT 1 cut(s) 243
BtsCI GGATG 2 cut(s) 656, 703
BtsI GCAGTG 1 cut(s) 598
BtsIMutI CAGTG 2 cut(s) 546, 598
BveI ACCTGC 1 cut(s) 178
Cac8I GCNNGC 1 cut(s) 349
Cfr13I GGNCC 2 cut(s) 185, 748
ClaI ATCGAT 1 cut(s) 243
CsiI ACCWGGT 1 cut(s) 384
Csp6I GTAC 3 cut(s) 66, 70, 315
CviAII CATG 2 cut(s) 62, 348
CviJI RGCY 7 cut(s) 40, 152, 163, 468, 750, 823, 911
CviKI_1 RGCY 7 cut(s) 40, 152, 163, 468, 750, 823, 911
CviQI GTAC 3 cut(s) 66, 70, 315
DdeI CTNAG 1 cut(s) 174
DpnI GATC 4 cut(s) 159, 198, 270, 720
DpnII GATC 4 cut(s) 157, 196, 268, 718
DraI TTTAAA 2 cut(s) 526, 886
Eam1104I CTCTTC 1 cut(s) 792
EarI CTCTTC 1 cut(s) 792
Eco105I TACGTA 1 cut(s) 69
Eco47I GGWCC 1 cut(s) 185
EcoNI CCTNNNNNAGG 1 cut(s) 755
EcoO109I RGGNCCY 1 cut(s) 748
EcoRI GAATTC 2 cut(s) 308, 400
EcoRII CCWGG 2 cut(s) 384, 831
EcoT22I ATGCAT 1 cut(s) 349
Esp3I CGTCTC 1 cut(s) 110
FaeI CATG 2 cut(s) 65, 351
FaiI YATR 9 cut(s) 63, 125, 299, 336, 349, 482, 561, 774, 850
FaqI GGGAC 1 cut(s) 171
FatI CATG 2 cut(s) 61, 347
Fnu4HI GCNGC 2 cut(s) 485, 677
FokI GGATG 2 cut(s) 643, 710
Fsp4HI GCNGC 2 cut(s) 485, 677
GluI GCNGC 2 cut(s) 485, 677
HaeIII GGCC 2 cut(s) 152, 750
Hin1II CATG 2 cut(s) 65, 351
HincII GTYRAC 1 cut(s) 537
HindII GTYRAC 1 cut(s) 537
HindIII AAGCTT 1 cut(s) 821
HinfI GANTC 3 cut(s) 25, 229, 576
HphI GGTGA 2 cut(s) 484, 656
Hpy166II GTNNAC 4 cut(s) 141, 375, 518, 537
Hpy188I TCNGA 3 cut(s) 177, 343, 942
Hpy188III TCNNGA 6 cut(s) 11, 116, 397, 569, 722, 919
Hpy8I GTNNAC 4 cut(s) 141, 375, 518, 537
HpyAV CCTTC 2 cut(s) 782, 901
HpyCH4III ACNGT 2 cut(s) 541, 869
HpyCH4IV ACGT 2 cut(s) 68, 103
HpyCH4V TGCA 9 cut(s) 56, 347, 416, 586, 603, 636, 714, 745, 863
HpyF10VI GCNNNNNNNGC 1 cut(s) 711
HpyF3I CTNAG 1 cut(s) 174
HpySE526I ACGT 2 cut(s) 68, 103
Hsp92II CATG 2 cut(s) 65, 351
Kzo9I GATC 4 cut(s) 157, 196, 268, 718
Lsp1109I GCAGC 1 cut(s) 663
LweI GCATC 3 cut(s) 235, 334, 665
MabI ACCWGGT 1 cut(s) 384
MaeII ACGT 2 cut(s) 68, 103
MalI GATC 4 cut(s) 159, 198, 270, 720
MboI GATC 4 cut(s) 157, 196, 268, 718
MboII GAAGA 5 cut(s) 332, 504, 621, 809, 821
MfeI CAATTG 1 cut(s) 663
MluCI AATT 9 cut(s) 282, 308, 400, 408, 437, 477, 617, 648, 663
MlyI GAGTC 2 cut(s) 34, 223
MmeI TCCRAC 1 cut(s) 675
MnlI CCTC 5 cut(s) 148, 363, 646, 897, 943
Mph1103I ATGCAT 1 cut(s) 349
MseI TTAA 9 cut(s) 17, 525, 612, 687, 735, 753, 885, 897, 945
MslI CAYNNNNRTG 2 cut(s) 513, 665
MspR9I CCNGG 2 cut(s) 386, 833
MunI CAATTG 1 cut(s) 663
MvaI CCWGG 2 cut(s) 386, 833
MwoI GCNNNNNNNGC 1 cut(s) 711
NdeII GATC 4 cut(s) 157, 196, 268, 718
NlaIII CATG 2 cut(s) 65, 351
NlaIV GGNNCC 2 cut(s) 187, 829
NmeAIII GCCGAG 1 cut(s) 178
NsiI ATGCAT 1 cut(s) 349
NspI RCATGY 1 cut(s) 351
OliI CACNNNNGTG 1 cut(s) 665
PaeI GCATGC 1 cut(s) 351
PfeI GAWTC 1 cut(s) 576
PkrI GCNGC 2 cut(s) 486, 678
Ple19I CGATCG 1 cut(s) 271
PleI GAGTC 2 cut(s) 33, 223
PpsI GAGTC 2 cut(s) 33, 223
Ppu21I YACGTR 1 cut(s) 69
PshBI ATTAAT 1 cut(s) 945
Psp6I CCWGG 2 cut(s) 384, 831
PspGI CCWGG 2 cut(s) 384, 831
PspN4I GGNNCC 2 cut(s) 187, 829
PspPI GGNCC 2 cut(s) 185, 748
PvuI CGATCG 1 cut(s) 271
RsaI GTAC 3 cut(s) 67, 71, 316
RsaNI GTAC 3 cut(s) 66, 70, 315
RseI CAYNNNNRTG 2 cut(s) 513, 665
SaqAI TTAA 9 cut(s) 17, 525, 612, 687, 735, 753, 885, 897, 945
SatI GCNGC 2 cut(s) 485, 677
Sau3AI GATC 4 cut(s) 157, 196, 268, 718
Sau96I GGNCC 2 cut(s) 185, 748
SchI GAGTC 2 cut(s) 34, 223
ScrFI CCNGG 2 cut(s) 386, 833
SexAI ACCWGGT 1 cut(s) 384
SfaNI GCATC 3 cut(s) 235, 334, 665
SinI GGWCC 1 cut(s) 185
SmiMI CAYNNNNRTG 2 cut(s) 513, 665
SnaBI TACGTA 1 cut(s) 69
SphI GCATGC 1 cut(s) 351
Sse9I AATT 9 cut(s) 282, 308, 400, 408, 437, 477, 617, 648, 663
SsiI CCGC 1 cut(s) 485
StyD4I CCNGG 2 cut(s) 384, 831
TaaI ACNGT 2 cut(s) 541, 869
TaiI ACGT 2 cut(s) 71, 106
TaqI TCGA 4 cut(s) 217, 243, 267, 721
TasI AATT 9 cut(s) 282, 308, 400, 408, 437, 477, 617, 648, 663
TauI GCSGC 1 cut(s) 487
TfiI GAWTC 1 cut(s) 576
Tru1I TTAA 9 cut(s) 17, 525, 612, 687, 735, 753, 885, 897, 945
Tru9I TTAA 9 cut(s) 17, 525, 612, 687, 735, 753, 885, 897, 945
TscAI CASTG 2 cut(s) 546, 605
TseI GCWGC 1 cut(s) 676
TspDTI ATGAA 3 cut(s) 225, 761, 822
TspGWI ACGGA 1 cut(s) 332
TspRI CASTG 2 cut(s) 546, 605
VpaK11BI GGWCC 1 cut(s) 185
VspI ATTAAT 1 cut(s) 945
XagI CCTNNNNNAGG 1 cut(s) 755
XapI RAATTY 3 cut(s) 308, 400, 437
XceI RCATGY 1 cut(s) 351
Zsp2I ATGCAT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.