RLG00000025023

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000886
Physical Location & Seq
Forward (+)
41397968 .. 41399074
1107 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025023

Sequence Viewer

Length: 1107 bp
ATGCTGAGACCGCATAAGAAGCTGAAGCCGTCGCCAGAACTATCGCCGCCGCCGCCGCGGAATAGCAACGACGCCGGGAAGAACCACGACCAATCTCCGAGCCGAAGATGGGAGGAGTTAGACGCGGAGTGTTTAGCAATCGTGTTTGCCAAGGTCGGAATGGAGTCTCTGCTTTTAGCTCTCCCTTTTGTCTGTAAATCATGGTACGCCGCATTTCACAATCCCTTATGCTGGAAATTTCTCCATTTCCCGGAGTTTGAGCCCTATCCTTTGTTCACTGATGTTCCTGTTGATGATACTATTGTGGAACCCAAGAGTTTTGGCCCCTTTTACAATAAATTTGTGGAAGACTACCAAATTGATAGTTCTCGGTTTTCGATCACCGGTTTTATAAAATTGGTTGTCAATCGTAGCAAGGGAAAGGCTCTTGAGCTGAAGCTACCTCAGTTTTGTACAGAAGAAACATTGAGATATGTTGCAGATGCTTGTCCTGGAATTAGGGATTTGCAGTTTCCTGATGACTTGATCCTTTTCAAGTATTCTCAGATTCTTCCAGAAGTGATTGGAAAGTGGAAGTTTCTGGAGCGGTTGACTTTGGGTGGTAATATGGAGAATATTATGAAGCAATTTCAAGTAAAAAGTGGGGAGCATTTGAGTAGGGATTTCGAGATGTTGTTGCCGTTGGATAGTGTTAGTCCCATCAGCAATAAGAACTTGCATGAAATCCTGGTGCAGGTTGGCCTTCACTGCAAGCGGATGCGGGCTCTGCATATTTTTGATAGCTGTGTTGGTCAGGCTGAGGCTGAGGCAATTGTGACGGGGCTGCCGAATCTTGCGTTCTTGACCCTGGGATCGTCTCGTATTGAACGGAATACTCTTGTTACGCTCTTGCAGGGTTGCAGGAAGCTGTGCTGTTTCAATGTCTGGAATTGTGAAGGTTTTGTGATGGATGCTGAAGAAATGCGGGAGCTTGGTTCCCATATTAGGGAGTTTAGGTGGACGCGGGATCTGACTGTTAGTAAGTGCTACCTTGTGTTGAAGATGATTATTTTCTCCAGGGCTAGATTAACTCAGATATTGAGGAAAAGAACAATTCACATGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

369

Amino Acids

42.4

Weight (kDa)

8.38

Isoelectric Point (pI)

58.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 392
Acc36I ACCTGC 1 cut(s) 724
AccBSI CCGCTC 1 cut(s) 586
AccII CGCG 3 cut(s) 58, 125, 1003
AclWI GGATC 3 cut(s) 520, 859, 1014
AcsI RAATTY 2 cut(s) 236, 338
AcuI CTGAAG 3 cut(s) 44, 455, 975
AcyI GRCGYC 1 cut(s) 72
AfaI GTAC 2 cut(s) 206, 454
AfiI CCNNNNNNNGG 6 cut(s) 109, 231, 250, 733, 984, 985
AgeI ACCGGT 1 cut(s) 383
AgsI TTSAA 5 cut(s) 535, 632, 866, 919, 1039
AjnI CCWGG 4 cut(s) 490, 726, 846, 1055
AluBI AGCT 7 cut(s) 22, 179, 433, 439, 783, 907, 970
AluI AGCT 7 cut(s) 22, 179, 433, 439, 783, 907, 970
Alw26I GTCTC 2 cut(s) 171, 861
AlwI GGATC 3 cut(s) 520, 859, 1014
AoxI GGCC 2 cut(s) 322, 739
ApeKI GCWGC 1 cut(s) 823
ApoI RAATTY 2 cut(s) 236, 338
AsiGI ACCGGT 1 cut(s) 383
AspS9I GGNCC 1 cut(s) 323
AsuC2I CCSGG 2 cut(s) 76, 251
AsuHPI GGTGA 1 cut(s) 373
BaeI ACNNNNGTAYC 2 cut(s) 288, 321
BanII GRGCYC 2 cut(s) 264, 766
BbsI GAAGAC 1 cut(s) 354
BbvCI CCTCAGC 2 cut(s) 798, 804
BbvI GCAGC 1 cut(s) 810
BccI CCATC 3 cut(s) 102, 707, 940
BceAI ACGGC 2 cut(s) 13, 664
BciT130I CCWGG 4 cut(s) 492, 728, 848, 1057
BcnI CCSGG 2 cut(s) 76, 251
BcoDI GTCTC 2 cut(s) 171, 861
BfaI CTAG 1 cut(s) 1062
BfmI CTRYAG 1 cut(s) 1103
BfuAI ACCTGC 1 cut(s) 724
BisI GCNGC 6 cut(s) 47, 50, 53, 56, 210, 824
BlsI GCNGC 6 cut(s) 48, 51, 54, 57, 211, 825
Bme1390I CCNGG 6 cut(s) 76, 251, 492, 728, 848, 1057
BmgT120I GGNCC 1 cut(s) 323
BmiI GGNNCC 3 cut(s) 309, 325, 976
BmrFI CCNGG 6 cut(s) 76, 251, 492, 728, 848, 1057
BmsI GCATC 3 cut(s) 472, 747, 940
BpiI GAAGAC 1 cut(s) 354
BpmI CTGGAG 2 cut(s) 602, 1039
Bpu10I CCTNAGC 2 cut(s) 798, 804
BpuEI CTTGAG 1 cut(s) 449
BpuMI CCSGG 2 cut(s) 76, 251
BsaHI GRCGYC 1 cut(s) 72
BsaJI CCNNGG 5 cut(s) 56, 150, 846, 847, 1056
BsaWI WCCGGW 1 cut(s) 383
BsaXI ACNNNNNCTCC 2 cut(s) 980, 1010
Bsc4I CCNNNNNNNGG 6 cut(s) 109, 231, 250, 733, 984, 985
Bse118I RCCGGY 1 cut(s) 383
BseBI CCWGG 4 cut(s) 492, 728, 848, 1057
BseDI CCNNGG 5 cut(s) 56, 150, 846, 847, 1056
BseGI GGATG 2 cut(s) 762, 955
BseLI CCNNNNNNNGG 6 cut(s) 109, 231, 250, 733, 984, 985
BseMII CTCAG 5 cut(s) 458, 557, 789, 795, 1085
BseRI GAGGAG 1 cut(s) 128
BseXI GCAGC 1 cut(s) 810
BsgI GTGCAG 1 cut(s) 752
Bsh1236I CGCG 3 cut(s) 58, 125, 1003
BshFI GGCC 2 cut(s) 324, 741
BshTI ACCGGT 1 cut(s) 383
BsiSI CCGG 3 cut(s) 75, 251, 384
BslFI GGGAC 1 cut(s) 681
BslI CCNNNNNNNGG 6 cut(s) 109, 231, 250, 733, 984, 985
BsmAI GTCTC 2 cut(s) 171, 861
BsmBI CGTCTC 1 cut(s) 861
BsmFI GGGAC 1 cut(s) 681
BsnI GGCC 2 cut(s) 324, 741
Bsp1286I GDGCHC 2 cut(s) 264, 766
Bsp1407I TGTACA 1 cut(s) 452
Bsp143I GATC 4 cut(s) 378, 525, 851, 1006
BspANI GGCC 2 cut(s) 324, 741
BspCNI CTCAG 5 cut(s) 457, 556, 790, 796, 1084
BspFNI CGCG 3 cut(s) 58, 125, 1003
BspLI GGNNCC 3 cut(s) 309, 325, 976
BspMI ACCTGC 1 cut(s) 724
BspPI GGATC 3 cut(s) 520, 859, 1014
BsrBI CCGCTC 1 cut(s) 586
BsrFI RCCGGY 1 cut(s) 383
BsrGI TGTACA 1 cut(s) 452
BssAI RCCGGY 1 cut(s) 383
BssECI CCNNGG 5 cut(s) 56, 150, 846, 847, 1056
BssMI GATC 4 cut(s) 378, 525, 851, 1006
BssNI GRCGYC 1 cut(s) 72
BssT1I CCWWGG 1 cut(s) 150
Bst2UI CCWGG 4 cut(s) 492, 728, 848, 1057
Bst4CI ACNGT 1 cut(s) 1015
BstACI GRCGYC 1 cut(s) 72
BstAUI TGTACA 1 cut(s) 452
BstC8I GCNNGC 2 cut(s) 752, 762
BstDEI CTNAG 6 cut(s) 5, 444, 543, 798, 804, 1071
BstDSI CCRYGG 1 cut(s) 56
BstENI CCTNNNNNAGG 1 cut(s) 731
BstF5I GGATG 2 cut(s) 762, 955
BstFNI CGCG 3 cut(s) 58, 125, 1003
BstKTI GATC 4 cut(s) 381, 528, 854, 1009
BstMAI GTCTC 2 cut(s) 171, 861
BstMBI GATC 4 cut(s) 378, 525, 851, 1006
BstMWI GCNNNNNNNGC 6 cut(s) 10, 19, 52, 55, 747, 766
BstNI CCWGG 4 cut(s) 492, 728, 848, 1057
BstNSI RCATGY 1 cut(s) 1102
BstSCI CCNGG 6 cut(s) 74, 249, 490, 726, 846, 1055
BstSFI CTRYAG 1 cut(s) 1103
BstUI CGCG 3 cut(s) 58, 125, 1003
BstV1I GCAGC 1 cut(s) 810
BstV2I GAAGAC 1 cut(s) 354
BstX2I RGATCY 1 cut(s) 1006
BstYI RGATCY 1 cut(s) 1006
BsuRI GGCC 2 cut(s) 324, 741
BtgI CCRYGG 1 cut(s) 56
BtsCI GGATG 2 cut(s) 762, 955
BtsI GCAGTG 1 cut(s) 745
BtsIMutI CAGTG 2 cut(s) 276, 745
BveI ACCTGC 1 cut(s) 724
Cac8I GCNNGC 2 cut(s) 752, 762
Cfr10I RCCGGY 1 cut(s) 383
Cfr13I GGNCC 1 cut(s) 323
Cfr42I CCGCGG 1 cut(s) 59
CseI GACGC 3 cut(s) 80, 131, 1009
Csp6I GTAC 2 cut(s) 205, 453
CspAI ACCGGT 1 cut(s) 383
CviAII CATG 3 cut(s) 201, 719, 1099
CviQI GTAC 2 cut(s) 205, 453
DdeI CTNAG 6 cut(s) 5, 444, 543, 798, 804, 1071
DpnI GATC 4 cut(s) 380, 527, 853, 1008
DpnII GATC 4 cut(s) 378, 525, 851, 1006
Eco130I CCWWGG 1 cut(s) 150
Eco24I GRGCYC 2 cut(s) 264, 766
Eco57I CTGAAG 3 cut(s) 44, 455, 975
EcoNI CCTNNNNNAGG 1 cut(s) 731
EcoRII CCWGG 4 cut(s) 490, 726, 846, 1055
EcoT14I CCWWGG 1 cut(s) 150
EcoT38I GRGCYC 2 cut(s) 264, 766
ErhI CCWWGG 1 cut(s) 150
Esp3I CGTCTC 1 cut(s) 861
FaeI CATG 3 cut(s) 204, 722, 1102
FaqI GGGAC 1 cut(s) 681
FatI CATG 3 cut(s) 200, 718, 1098
FauI CCCGC 3 cut(s) 753, 957, 996
Fnu4HI GCNGC 6 cut(s) 47, 50, 53, 56, 210, 824
FokI GGATG 2 cut(s) 769, 962
FriOI GRGCYC 2 cut(s) 264, 766
Fsp4HI GCNGC 6 cut(s) 47, 50, 53, 56, 210, 824
FspBI CTAG 1 cut(s) 1062
GluI GCNGC 6 cut(s) 47, 50, 53, 56, 210, 824
GsuI CTGGAG 2 cut(s) 602, 1039
HaeIII GGCC 2 cut(s) 324, 741
HapII CCGG 3 cut(s) 75, 251, 384
HgaI GACGC 3 cut(s) 80, 131, 1009
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 3 cut(s) 204, 722, 1102
HincII GTYRAC 1 cut(s) 591
HindII GTYRAC 1 cut(s) 591
HinfI GANTC 3 cut(s) 164, 547, 829
HpaII CCGG 3 cut(s) 75, 251, 384
HphI GGTGA 1 cut(s) 373
Hpy166II GTNNAC 3 cut(s) 276, 591, 999
Hpy188I TCNGA 5 cut(s) 99, 158, 546, 1011, 1074
Hpy188III TCNNGA 7 cut(s) 428, 515, 554, 581, 667, 841, 925
Hpy8I GTNNAC 3 cut(s) 276, 591, 999
Hpy99I CGWCG 2 cut(s) 34, 74
HpyAV CCTTC 2 cut(s) 752, 929
HpyCH4III ACNGT 1 cut(s) 1015
HpyCH4V TGCA 8 cut(s) 479, 508, 718, 733, 750, 769, 892, 900
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 19, 52, 55, 747, 766
HpyF3I CTNAG 6 cut(s) 5, 444, 543, 798, 804, 1071
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 3 cut(s) 204, 722, 1102
KspI CCGCGG 1 cut(s) 59
Kzo9I GATC 4 cut(s) 378, 525, 851, 1006
LmnI GCTCC 3 cut(s) 583, 646, 967
Lsp1109I GCAGC 1 cut(s) 810
LweI GCATC 3 cut(s) 472, 747, 940
MaeI CTAG 1 cut(s) 1062
MaeIII GTNAC 2 cut(s) 814, 880
MalI GATC 4 cut(s) 380, 527, 853, 1008
MbiI CCGCTC 1 cut(s) 586
MboI GATC 4 cut(s) 378, 525, 851, 1006
MboII GAAGA 7 cut(s) 91, 117, 359, 470, 542, 968, 1051
MfeI CAATTG 1 cut(s) 810
MflI RGATCY 1 cut(s) 1006
MhlI GDGCHC 2 cut(s) 264, 766
MluCI AATT 9 cut(s) 236, 338, 357, 395, 495, 626, 810, 928, 1092
MlyI GAGTC 1 cut(s) 173
MmeI TCCRAC 2 cut(s) 136, 663
MnlI CCTC 5 cut(s) 106, 453, 793, 799, 1074
MseI TTAA 1 cut(s) 1067
MspA1I CMGCKG 1 cut(s) 58
MspI CCGG 3 cut(s) 75, 251, 384
MspR9I CCNGG 6 cut(s) 76, 251, 492, 728, 848, 1057
MunI CAATTG 1 cut(s) 810
MvaI CCWGG 4 cut(s) 492, 728, 848, 1057
MvnI CGCG 3 cut(s) 58, 125, 1003
MwoI GCNNNNNNNGC 6 cut(s) 10, 19, 52, 55, 747, 766
NciI CCSGG 2 cut(s) 76, 251
NdeII GATC 4 cut(s) 378, 525, 851, 1006
NlaIII CATG 3 cut(s) 204, 722, 1102
NlaIV GGNNCC 3 cut(s) 309, 325, 976
NmuCI GTSAC 1 cut(s) 814
NspI RCATGY 1 cut(s) 1102
PasI CCCWGGG 1 cut(s) 847
PcsI WCGNNNNNNNCGW 1 cut(s) 824
PfeI GAWTC 2 cut(s) 547, 829
PfoI TCCNGGA 2 cut(s) 249, 490
PinAI ACCGGT 1 cut(s) 383
PkrI GCNGC 6 cut(s) 48, 51, 54, 57, 211, 825
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
PsiI TTATAA 1 cut(s) 392
Psp6I CCWGG 4 cut(s) 490, 726, 846, 1055
PspGI CCWGG 4 cut(s) 490, 726, 846, 1055
PspN4I GGNNCC 3 cut(s) 309, 325, 976
PspPI GGNCC 1 cut(s) 323
PsuI RGATCY 1 cut(s) 1006
RsaI GTAC 2 cut(s) 206, 454
RsaNI GTAC 2 cut(s) 205, 453
SacII CCGCGG 1 cut(s) 59
SaqAI TTAA 1 cut(s) 1067
SatI GCNGC 6 cut(s) 47, 50, 53, 56, 210, 824
Sau3AI GATC 4 cut(s) 378, 525, 851, 1006
Sau96I GGNCC 1 cut(s) 323
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 6 cut(s) 76, 251, 492, 728, 848, 1057
SduI GDGCHC 2 cut(s) 264, 766
SfaNI GCATC 3 cut(s) 472, 747, 940
SfcI CTRYAG 1 cut(s) 1103
Sfr303I CCGCGG 1 cut(s) 59
SgrBI CCGCGG 1 cut(s) 59
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
Sse9I AATT 9 cut(s) 236, 338, 357, 395, 495, 626, 810, 928, 1092
SspI AATATT 1 cut(s) 616
SspMI CTAG 1 cut(s) 1062
StyD4I CCNGG 6 cut(s) 74, 249, 490, 726, 846, 1055
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 1 cut(s) 1015
TaqI TCGA 2 cut(s) 377, 666
TasI AATT 9 cut(s) 236, 338, 357, 395, 495, 626, 810, 928, 1092
TatI WGTACW 1 cut(s) 452
TauI GCSGC 5 cut(s) 49, 52, 55, 58, 212
TfiI GAWTC 2 cut(s) 547, 829
Tru1I TTAA 1 cut(s) 1067
Tru9I TTAA 1 cut(s) 1067
TscAI CASTG 2 cut(s) 283, 752
TseFI GTSAC 1 cut(s) 814
TseI GCWGC 1 cut(s) 823
Tsp45I GTSAC 1 cut(s) 814
TspDTI ATGAA 2 cut(s) 635, 735
TspGWI ACGGA 1 cut(s) 883
TspRI CASTG 2 cut(s) 283, 752
XagI CCTNNNNNAGG 1 cut(s) 731
XapI RAATTY 2 cut(s) 236, 338
XceI RCATGY 1 cut(s) 1102
XcmI CCANNNNNNNNNTGG 1 cut(s) 157
XspI CTAG 1 cut(s) 1062
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.