AT5G08535

glycine rich nucleic binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002748
Physical Location & Seq
Forward (+)
2762029 .. 2763453
1425 bp
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UTR
Exon/CDS
Intron
AT5G08535.1

Sequence Viewer

Length: 426 bp
ATGGGAGATTCCTCGGTTTCGACAAGTTCATGGGCTGTCATTGAATCTGCTAATAGGTTTCAGGTGTCGAGCGTTATGGGTGAGTCCTCTGGATCAAGCAGTTCATTGGCTGCTATAAATTCGTCCAACATTGGGTTTCAGCTCCTAAAGAAGCATGGCTGGAAGGAAGGCACTGGTCTTGGAATCGCTGAACAGGGTATATTGGTGCCTCTACAAGCAGAGCCAAAACATAACAAACGAGGAGTGGGAGCTAAACAACCAGCTAAGAGAAAAGTGGCTCAGCCTCAGGCTAAGGATGAAGAAGTCTCAAAGCAGAGTAAGAAACTTTCGAAGAAAATGCGGAAGATGATGGAGCACGAAAAACATTTACAGGAAAAAGAATTTGAACGAGCCTTCTTTAGGGAGTTCTGGCCCGATAATGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-patch

Protein Analysis

141

Amino Acids

15.64

Weight (kDa)

9.73

Isoelectric Point (pI)

59.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-patch PF01585 42 - 85 1.4e-16 G-patch domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 205
AciI CCGC 1 cut(s) 340
AclWI GGATC 1 cut(s) 100
AcsI RAATTY 2 cut(s) 118, 380
AfiI CCNNNNNNNGG 2 cut(s) 132, 399
AgsI TTSAA 2 cut(s) 44, 386
AluBI AGCT 3 cut(s) 142, 251, 263
AluI AGCT 3 cut(s) 142, 251, 263
Alw21I GWGCWC 1 cut(s) 357
Alw26I GTCTC 1 cut(s) 310
AlwI GGATC 1 cut(s) 100
AoxI GGCC 1 cut(s) 410
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 2 cut(s) 118, 380
AspS9I GGNCC 1 cut(s) 411
AsuHPI GGTGA 1 cut(s) 92
AsuII TTCGAA 1 cut(s) 329
AxyI CCTNAGG 1 cut(s) 285
BanI GGYRCC 1 cut(s) 205
Bbv12I GWGCWC 1 cut(s) 357
BbvI GCAGC 1 cut(s) 97
BccI CCATC 1 cut(s) 343
BcgI CGANNNNNNTGC 2 cut(s) 319, 353
BcoDI GTCTC 1 cut(s) 310
BisI GCNGC 1 cut(s) 111
BlpI GCTNAGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 411
BmiI GGNNCC 1 cut(s) 207
Bpu10I CCTNAGC 1 cut(s) 291
Bpu1102I GCTNAGC 1 cut(s) 279
Bpu14I TTCGAA 1 cut(s) 329
BsaJI CCNNGG 1 cut(s) 12
Bsc4I CCNNNNNNNGG 2 cut(s) 132, 399
Bse1I ACTGG 1 cut(s) 178
Bse21I CCTNAGG 1 cut(s) 285
BseDI CCNNGG 1 cut(s) 12
BseGI GGATG 1 cut(s) 301
BseLI CCNNNNNNNGG 2 cut(s) 132, 399
BseMII CTCAG 2 cut(s) 293, 299
BseNI ACTGG 1 cut(s) 178
BseRI GAGGAG 1 cut(s) 255
BseXI GCAGC 1 cut(s) 97
BshFI GGCC 1 cut(s) 412
BshNI GGYRCC 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 357
BslI CCNNNNNNNGG 2 cut(s) 132, 399
BsmAI GTCTC 1 cut(s) 310
BsnI GGCC 1 cut(s) 412
Bsp119I TTCGAA 1 cut(s) 329
Bsp1286I GDGCHC 1 cut(s) 357
Bsp143I GATC 1 cut(s) 92
Bsp1720I GCTNAGC 1 cut(s) 279
BspACI CCGC 1 cut(s) 340
BspANI GGCC 1 cut(s) 412
BspCNI CTCAG 2 cut(s) 292, 298
BspLI GGNNCC 1 cut(s) 207
BspPI GGATC 1 cut(s) 100
BspT104I TTCGAA 1 cut(s) 329
BspT107I GGYRCC 1 cut(s) 205
BsrI ACTGG 1 cut(s) 178
BssECI CCNNGG 1 cut(s) 12
BssMI GATC 1 cut(s) 92
BstBI TTCGAA 1 cut(s) 329
BstDEI CTNAG 4 cut(s) 264, 279, 285, 291
BstENI CCTNNNNNAGG 1 cut(s) 397
BstF5I GGATG 1 cut(s) 301
BstKTI GATC 1 cut(s) 95
BstMAI GTCTC 1 cut(s) 310
BstMBI GATC 1 cut(s) 92
BstV1I GCAGC 1 cut(s) 97
Bsu36I CCTNAGG 1 cut(s) 285
BsuRI GGCC 1 cut(s) 412
BtsCI GGATG 1 cut(s) 301
BtsIMutI CAGTG 1 cut(s) 171
Cfr13I GGNCC 1 cut(s) 411
CviAII CATG 2 cut(s) 30, 155
DdeI CTNAG 4 cut(s) 264, 279, 285, 291
DpnI GATC 1 cut(s) 94
DpnII GATC 1 cut(s) 92
Eco81I CCTNAGG 1 cut(s) 285
EcoNI CCTNNNNNAGG 1 cut(s) 397
FaeI CATG 2 cut(s) 33, 158
FaiI YATR 7 cut(s) 31, 77, 116, 156, 200, 231, 424
FatI CATG 2 cut(s) 29, 154
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 1 cut(s) 308
Fsp4HI GCNGC 1 cut(s) 111
GluI GCNGC 1 cut(s) 111
HaeIII GGCC 1 cut(s) 412
Hin1II CATG 2 cut(s) 33, 158
HinfI GANTC 4 cut(s) 8, 44, 83, 183
HphI GGTGA 1 cut(s) 92
Hpy188III TCNNGA 1 cut(s) 90
HpyAV CCTTC 3 cut(s) 157, 161, 403
HpyF3I CTNAG 4 cut(s) 264, 279, 285, 291
Hsp92II CATG 2 cut(s) 33, 158
Kzo9I GATC 1 cut(s) 92
LmnI GCTCC 3 cut(s) 147, 248, 352
LpnPI CCDG 9 cut(s) 47, 75, 145, 159, 179, 272, 273, 356, 394
Lsp1109I GCAGC 1 cut(s) 97
MalI GATC 1 cut(s) 94
MboI GATC 1 cut(s) 92
MboII GAAGA 3 cut(s) 311, 343, 355
MhlI GDGCHC 1 cut(s) 357
MluCI AATT 2 cut(s) 118, 380
MlyI GAGTC 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 5 cut(s) 22, 97, 219, 233, 294
NdeII GATC 1 cut(s) 92
NlaIII CATG 2 cut(s) 33, 158
NlaIV GGNNCC 1 cut(s) 207
NspV TTCGAA 1 cut(s) 329
PfeI GAWTC 3 cut(s) 8, 44, 183
PkrI GCNGC 1 cut(s) 112
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
PspN4I GGNNCC 1 cut(s) 207
PspPI GGNCC 1 cut(s) 411
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 1 cut(s) 92
Sau96I GGNCC 1 cut(s) 411
SchI GAGTC 1 cut(s) 92
SduI GDGCHC 1 cut(s) 357
SetI ASST 5 cut(s) 59, 66, 144, 253, 265
SfuI TTCGAA 1 cut(s) 329
Sse9I AATT 2 cut(s) 118, 380
SsiI CCGC 1 cut(s) 340
TaqI TCGA 3 cut(s) 20, 68, 329
TasI AATT 2 cut(s) 118, 380
TfiI GAWTC 3 cut(s) 8, 44, 183
TscAI CASTG 1 cut(s) 178
TseI GCWGC 1 cut(s) 110
TspDTI ATGAA 3 cut(s) 18, 93, 312
TspRI CASTG 1 cut(s) 178
XagI CCTNNNNNAGG 1 cut(s) 397
XapI RAATTY 2 cut(s) 118, 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.