Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000344.1

Orthogroup ID

OG0002748

Physical Location & Seq

Genomic Coordinates Reverse (-)

106 .. 2899

Gene Structure 2794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000344.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

atgatggtggactcatcttcttcggccatagactcttcgaatatcgggttccagcttttgaagaaacatgggtggacagaaggaacgggtctcggtgcttccgagcagggtaggttagagcccgtgcaagcttacttgaaggaaagcaaacaaggcttgggagctgatgcaccaaaaaaaagatcgttgcaagtttcagaaaatgagtctagtggaaagtccgcaaagaacattaacttcacaaattgggttcaggaggaagaaagaataagaaaggatatgacggcttcaacttcatcaacagccattaattcatccaatataggctttcagcttttgaagaaacatggttggaaagaaggaactggtcttggcatttgtgagcagggaaggttggagcctgtacaaacatacttgaagaataataagcggggactgggagcagataagatacggaaggctttaaagccccctgatcctcctgccttgaataaaaaaaatgaccaggagctgcattcaaaaaaatccaagggactctcaaagaagatgaggaagatgcgggagttagaaagcagattgcaagagaaggaatttgagcgggcctttttcagggaattctggccggataatgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch

Protein Analysis

211

Amino Acids

23.68

Weight (kDa)

9.68

Isoelectric Point (pI)

46.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52350 AT5G08535 AT5G08535 AT5G08535 AT5G08535
fragaria_vesca	FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311
malus_domestica	MD13G1001300.v1.1
prunus_persica	Prupe.1G351400_v2.0.a1 Prupe.1G351400_v2.0.a1
pyrus_communis	pycom13g00100
rosa_chinensis	RchiOBHm_Chr4g0447151 RchiOBHm_Chr5g0030611
rosa_laevigata	RLG00000005600 RLG00000033233
rosa_multiflora	Rmu_sc0003238.1_g000010 Rmu_sc0008328.1_g000005 Rmu_ssc0000344.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049670 Rroxscaffold_5G00387540
rosa_rugosa	Rorug04G0378500 Rorug04G0378600 Rorug05G0118900
rosa_samantha	Rh4AG439800 Rh4BG448900 Rh4CG465900 Rh4DG447300 Rh5CG233800 Rh5DG214800
rosa_wichuraiana	Rw4G037630 Rw5G019320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	598
AciI	CCGC	4 cut(s)	222, 430, 559, 598
AclWI	GGATC	1 cut(s)	470
AcoI	YGGCCR	2 cut(s)	24, 620
AcsI	RAATTY	2 cut(s)	590, 614
AfaI	GTAC	1 cut(s)	405
AfiI	CCNNNNNNNGG	1 cut(s)	609
AgsI	TTSAA	7 cut(s)	61, 139, 291, 340, 418, 490, 519
AjnI	CCWGG	1 cut(s)	504
AluBI	AGCT	5 cut(s)	55, 131, 164, 334, 511
AluI	AGCT	5 cut(s)	55, 131, 164, 334, 511
Alw26I	GTCTC	1 cut(s)	95
AlwI	GGATC	1 cut(s)	470
AlwNI	CAGNNNCTG	1 cut(s)	511
AoxI	GGCC	3 cut(s)	24, 600, 620
ApeKI	GCWGC	1 cut(s)	511
ApoI	RAATTY	2 cut(s)	590, 614
AseI	ATTAAT	1 cut(s)	309
AspS9I	GGNCC	1 cut(s)	600
AsuII	TTCGAA	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	498
BceAI	ACGGC	1 cut(s)	300
BciT130I	CCWGG	1 cut(s)	506
BcoDI	GTCTC	1 cut(s)	95
BfaI	CTAG	1 cut(s)	210
BisI	GCNGC	1 cut(s)	512
BlsI	GCNGC	1 cut(s)	513
Bme1390I	CCNGG	1 cut(s)	506
BmgT120I	GGNCC	1 cut(s)	600
BmiI	GGNNCC	2 cut(s)	50, 399
BmrFI	CCNGG	1 cut(s)	506
BmrI	ACTGGG	1 cut(s)	446
BmsI	GCATC	2 cut(s)	157, 546
BmuI	ACTGGG	1 cut(s)	446
Bpu14I	TTCGAA	1 cut(s)	38
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	528
Bsc4I	CCNNNNNNNGG	1 cut(s)	609
Bse1I	ACTGG	2 cut(s)	370, 441
BseBI	CCWGG	1 cut(s)	506
BseDI	CCNNGG	1 cut(s)	528
BseGI	GGATG	1 cut(s)	314
BseLI	CCNNNNNNNGG	1 cut(s)	609
BseNI	ACTGG	2 cut(s)	370, 441
BseXI	GCAGC	1 cut(s)	498
BshFI	GGCC	3 cut(s)	26, 602, 622
BsiSI	CCGG	1 cut(s)	623
BslFI	GGGAC	2 cut(s)	447, 546
BslI	CCNNNNNNNGG	1 cut(s)	609
BsmAI	GTCTC	1 cut(s)	95
BsmFI	GGGAC	2 cut(s)	447, 546
BsmI	GAATGC	1 cut(s)	514
BsnI	GGCC	3 cut(s)	26, 602, 622
Bso31I	GGTCTC	1 cut(s)	95
Bsp119I	TTCGAA	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp1407I	TGTACA	1 cut(s)	403
Bsp143I	GATC	2 cut(s)	182, 475
BspACI	CCGC	4 cut(s)	222, 430, 559, 598
BspANI	GGCC	3 cut(s)	26, 602, 622
BspLI	GGNNCC	2 cut(s)	50, 399
BspPI	GGATC	1 cut(s)	470
BspT104I	TTCGAA	1 cut(s)	38
BspTNI	GGTCTC	1 cut(s)	95
BsrBI	CCGCTC	1 cut(s)	598
BsrGI	TGTACA	1 cut(s)	403
BsrI	ACTGG	2 cut(s)	370, 441
BssECI	CCNNGG	1 cut(s)	528
BssMI	GATC	2 cut(s)	182, 475
BssT1I	CCWWGG	1 cut(s)	528
Bst2UI	CCWGG	1 cut(s)	506
Bst6I	CTCTTC	1 cut(s)	40
BstAUI	TGTACA	1 cut(s)	403
BstBI	TTCGAA	1 cut(s)	38
BstC8I	GCNNGC	2 cut(s)	129, 600
BstENI	CCTNNNNNAGG	1 cut(s)	607
BstF5I	GGATG	1 cut(s)	314
BstKTI	GATC	2 cut(s)	185, 478
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	2 cut(s)	182, 475
BstMWI	GCNNNNNNNGC	1 cut(s)	153
BstNI	CCWGG	1 cut(s)	506
BstSCI	CCNGG	1 cut(s)	504
BstV1I	GCAGC	1 cut(s)	498
BsuRI	GGCC	3 cut(s)	26, 602, 622
BtsCI	GGATG	1 cut(s)	314
Cac8I	GCNNGC	2 cut(s)	129, 600
CaiI	CAGNNNCTG	1 cut(s)	511
Cfr13I	GGNCC	1 cut(s)	600
Csp6I	GTAC	1 cut(s)	404
CviAII	CATG	2 cut(s)	68, 347
CviQI	GTAC	1 cut(s)	404
DpnI	GATC	2 cut(s)	184, 477
DpnII	GATC	2 cut(s)	182, 475
DraI	TTTAAA	1 cut(s)	465
EaeI	YGGCCR	2 cut(s)	24, 620
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	528
Eco24I	GRGCYC	1 cut(s)	123
Eco31I	GGTCTC	1 cut(s)	95
EcoNI	CCTNNNNNAGG	1 cut(s)	607
EcoRI	GAATTC	1 cut(s)	614
EcoRII	CCWGG	1 cut(s)	504
EcoT14I	CCWWGG	1 cut(s)	528
EcoT38I	GRGCYC	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	528
FaeI	CATG	2 cut(s)	71, 350
FaiI	YATR	6 cut(s)	29, 69, 281, 323, 348, 412
FaqI	GGGAC	2 cut(s)	447, 546
FatI	CATG	2 cut(s)	67, 346
FauI	CCCGC	3 cut(s)	423, 552, 591
Fnu4HI	GCNGC	1 cut(s)	512
FokI	GGATG	1 cut(s)	301
FriOI	GRGCYC	1 cut(s)	123
Fsp4HI	GCNGC	1 cut(s)	512
FspBI	CTAG	1 cut(s)	210
GluI	GCNGC	1 cut(s)	512
HaeIII	GGCC	3 cut(s)	26, 602, 622
HapII	CCGG	1 cut(s)	623
Hin1II	CATG	2 cut(s)	71, 350
HindIII	AAGCTT	1 cut(s)	129
HinfI	GANTC	4 cut(s)	11, 32, 206, 534
HpaII	CCGG	1 cut(s)	623
Hpy166II	GTNNAC	2 cut(s)	10, 75
Hpy188I	TCNGA	3 cut(s)	103, 199, 635
Hpy188III	TCNNGA	1 cut(s)	254
Hpy8I	GTNNAC	2 cut(s)	10, 75
HpyAV	CCTTC	6 cut(s)	74, 133, 353, 384, 451, 580
HpyCH4V	TGCA	5 cut(s)	127, 170, 190, 514, 580
HpyF10VI	GCNNNNNNNGC	1 cut(s)	153
Hsp92II	CATG	2 cut(s)	71, 350
Kzo9I	GATC	2 cut(s)	182, 475
LmnI	GCTCC	4 cut(s)	161, 397, 440, 508
Lsp1109I	GCAGC	1 cut(s)	498
LweI	GCATC	2 cut(s)	157, 546
MaeI	CTAG	1 cut(s)	210
MalI	GATC	2 cut(s)	184, 477
MbiI	CCGCTC	1 cut(s)	598
MboI	GATC	2 cut(s)	182, 475
MboII	GAAGA	9 cut(s)	9, 12, 27, 73, 272, 352, 430, 556, 565
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	4 cut(s)	244, 310, 590, 614
MlyI	GAGTC	4 cut(s)	5, 26, 215, 528
MmeI	TCCRAC	2 cut(s)	332, 375
MnlI	CCTC	3 cut(s)	250, 489, 543
MseI	TTAA	3 cut(s)	234, 309, 464
MspI	CCGG	1 cut(s)	623
MspR9I	CCNGG	1 cut(s)	506
Mva1269I	GAATGC	1 cut(s)	514
MvaI	CCWGG	1 cut(s)	506
MwoI	GCNNNNNNNGC	1 cut(s)	153
NdeII	GATC	2 cut(s)	182, 475
NlaIII	CATG	2 cut(s)	71, 350
NlaIV	GGNNCC	2 cut(s)	50, 399
NspV	TTCGAA	1 cut(s)	38
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PctI	GAATGC	1 cut(s)	514
PkrI	GCNGC	1 cut(s)	513
PleI	GAGTC	4 cut(s)	5, 26, 214, 528
PpsI	GAGTC	4 cut(s)	5, 26, 214, 528
PshBI	ATTAAT	1 cut(s)	309
Psp6I	CCWGG	1 cut(s)	504
PspGI	CCWGG	1 cut(s)	504
PspN4I	GGNNCC	2 cut(s)	50, 399
PspPI	GGNCC	1 cut(s)	600
PstNI	CAGNNNCTG	1 cut(s)	511
RsaI	GTAC	1 cut(s)	405
RsaNI	GTAC	1 cut(s)	404
SaqAI	TTAA	3 cut(s)	234, 309, 464
SatI	GCNGC	1 cut(s)	512
Sau3AI	GATC	2 cut(s)	182, 475
Sau96I	GGNCC	1 cut(s)	600
SchI	GAGTC	4 cut(s)	5, 26, 215, 528
ScrFI	CCNGG	1 cut(s)	506
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	7 cut(s)	57, 116, 133, 166, 336, 395, 513
SfaNI	GCATC	2 cut(s)	157, 546
SfuI	TTCGAA	1 cut(s)	38
Sse9I	AATT	4 cut(s)	244, 310, 590, 614
SsiI	CCGC	4 cut(s)	222, 430, 559, 598
SspMI	CTAG	1 cut(s)	210
StyD4I	CCNGG	1 cut(s)	504
StyI	CCWWGG	1 cut(s)	528
TaqI	TCGA	1 cut(s)	38
TasI	AATT	4 cut(s)	244, 310, 590, 614
TatI	WGTACW	1 cut(s)	403
Tru1I	TTAA	3 cut(s)	234, 309, 464
Tru9I	TTAA	3 cut(s)	234, 309, 464
TseI	GCWGC	1 cut(s)	511
TspDTI	ATGAA	2 cut(s)	285, 303
TspGWI	ACGGA	1 cut(s)	469
VspI	ATTAAT	1 cut(s)	309
XagI	CCTNNNNNAGG	1 cut(s)	607
XapI	RAATTY	2 cut(s)	590, 614
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.