Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002748

Physical Location & Seq

Genomic Coordinates Forward (+)

69570115 .. 69573158

Gene Structure 3044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG465900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGATGGTGGACTCATCTTCTTCGGCCATAGACTCTTCGAATATCGGGTTCCAGCTTTTGAAGAAACATGGGTGGACAGAAGGAACGGGTCTCGGTGCTTCCGAGCAGGGTAGGTTAGAGCCCGTGCAAGCTTACTTGAAGGAAAGCAAACGAGGCTTGGGAGCGGATGCACCAAAAAAAAGATCATTGCAAGTTTCAGAAAATGAGTCTAGTGGAAAGTCCGCAAAGAGCATTAACTTCACAAATTGGGTTCAGGAGGAAGAAAGAATAAGAAAGGATATGACGGCTTCAACTTCATCAACAGCCATTAATTCATCCAATATAGGCTTTCAGCTTTTGAAGAAACATGGTTGGAAAGAAGGAACTGGTCTTGGCATTTGTGAGCAGGGAAGGTTGGAGCCTGTACAAACGTACTTGAAGAATAATAAGCGGGGACTGGGAGCAGATAAGATACGGAAGGCTTTAAAGGCCCCTGATCCTCCTGCCTTGAATCAAAAAAATGACCAGGTGAGTTCATCTAAATGTGTAGCAAATAGCAATAATTATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch

Protein Analysis

183

Amino Acids

19.9

Weight (kDa)

9.58

Isoelectric Point (pI)

41.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch	PF01585	13 - 56	2e-17	G-patch domain
G-patch_2	PF12656	14 - 57	8.8e-06	G-patch domain
G-patch	PF01585	106 - 149	7.1e-18	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52350 AT5G08535 AT5G08535 AT5G08535 AT5G08535
fragaria_vesca	FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311
malus_domestica	MD13G1001300.v1.1
prunus_persica	Prupe.1G351400_v2.0.a1 Prupe.1G351400_v2.0.a1
pyrus_communis	pycom13g00100
rosa_chinensis	RchiOBHm_Chr4g0447151 RchiOBHm_Chr5g0030611
rosa_laevigata	RLG00000005600 RLG00000033233
rosa_multiflora	Rmu_sc0003238.1_g000010 Rmu_sc0008328.1_g000005 Rmu_ssc0000344.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049670 Rroxscaffold_5G00387540
rosa_rugosa	Rorug04G0378500 Rorug04G0378600 Rorug05G0118900
rosa_samantha	Rh4AG439800 Rh4BG448900 Rh4CG465900 Rh4DG447300 Rh5CG233800 Rh5DG214800
rosa_wichuraiana	Rw4G037630 Rw5G019320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	546
AccBSI	CCGCTC	1 cut(s)	164
AciI	CCGC	3 cut(s)	164, 222, 430
AclWI	GGATC	1 cut(s)	470
AcoI	YGGCCR	1 cut(s)	24
AfaI	GTAC	2 cut(s)	405, 413
AgsI	TTSAA	6 cut(s)	61, 139, 291, 340, 418, 490
AjnI	CCWGG	1 cut(s)	504
AluBI	AGCT	3 cut(s)	55, 131, 334
AluI	AGCT	3 cut(s)	55, 131, 334
Alw26I	GTCTC	1 cut(s)	95
AlwI	GGATC	1 cut(s)	470
AoxI	GGCC	2 cut(s)	24, 468
AseI	ATTAAT	1 cut(s)	309
AspS9I	GGNCC	1 cut(s)	469
AsuHPI	GGTGA	1 cut(s)	520
AsuII	TTCGAA	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	123
BceAI	ACGGC	1 cut(s)	300
BciT130I	CCWGG	1 cut(s)	506
BcoDI	GTCTC	1 cut(s)	95
BfaI	CTAG	1 cut(s)	210
Bme1390I	CCNGG	1 cut(s)	506
BmgT120I	GGNCC	1 cut(s)	469
BmiI	GGNNCC	3 cut(s)	50, 399, 471
BmrFI	CCNGG	1 cut(s)	506
BmrI	ACTGGG	1 cut(s)	446
BmsI	GCATC	1 cut(s)	157
BmuI	ACTGGG	1 cut(s)	446
Bpu14I	TTCGAA	1 cut(s)	38
BsaI	GGTCTC	1 cut(s)	95
Bse1I	ACTGG	2 cut(s)	370, 441
Bse3DI	GCAATG	1 cut(s)	185
BseBI	CCWGG	1 cut(s)	506
BseGI	GGATG	2 cut(s)	172, 314
BseMI	GCAATG	1 cut(s)	185
BseNI	ACTGG	2 cut(s)	370, 441
BshFI	GGCC	2 cut(s)	26, 470
BslFI	GGGAC	1 cut(s)	447
BsmAI	GTCTC	1 cut(s)	95
BsmFI	GGGAC	1 cut(s)	447
BsnI	GGCC	2 cut(s)	26, 470
Bso31I	GGTCTC	1 cut(s)	95
Bsp119I	TTCGAA	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp1407I	TGTACA	1 cut(s)	403
Bsp143I	GATC	2 cut(s)	182, 475
BspACI	CCGC	3 cut(s)	164, 222, 430
BspANI	GGCC	2 cut(s)	26, 470
BspLI	GGNNCC	3 cut(s)	50, 399, 471
BspPI	GGATC	1 cut(s)	470
BspT104I	TTCGAA	1 cut(s)	38
BspTNI	GGTCTC	1 cut(s)	95
BsrBI	CCGCTC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	185
BsrGI	TGTACA	1 cut(s)	403
BsrI	ACTGG	2 cut(s)	370, 441
BssMI	GATC	2 cut(s)	182, 475
Bst2UI	CCWGG	1 cut(s)	506
Bst6I	CTCTTC	1 cut(s)	40
BstAUI	TGTACA	1 cut(s)	403
BstBI	TTCGAA	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	129
BstF5I	GGATG	2 cut(s)	172, 314
BstKTI	GATC	2 cut(s)	185, 478
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	2 cut(s)	182, 475
BstMWI	GCNNNNNNNGC	2 cut(s)	153, 467
BstNI	CCWGG	1 cut(s)	506
BstSCI	CCNGG	1 cut(s)	504
BsuRI	GGCC	2 cut(s)	26, 470
BtsCI	GGATG	2 cut(s)	172, 314
Cac8I	GCNNGC	1 cut(s)	129
Cfr13I	GGNCC	1 cut(s)	469
CsiI	ACCWGGT	1 cut(s)	504
Csp6I	GTAC	2 cut(s)	404, 412
CviAII	CATG	2 cut(s)	68, 347
CviQI	GTAC	2 cut(s)	404, 412
DpnI	GATC	2 cut(s)	184, 477
DpnII	GATC	2 cut(s)	182, 475
DraI	TTTAAA	1 cut(s)	465
EaeI	YGGCCR	1 cut(s)	24
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
Eco24I	GRGCYC	1 cut(s)	123
Eco31I	GGTCTC	1 cut(s)	95
EcoO109I	RGGNCCY	1 cut(s)	469
EcoRII	CCWGG	1 cut(s)	504
EcoT38I	GRGCYC	1 cut(s)	123
FaeI	CATG	2 cut(s)	71, 350
FaiI	YATR	6 cut(s)	29, 69, 281, 323, 348, 546
FaqI	GGGAC	1 cut(s)	447
FatI	CATG	2 cut(s)	67, 346
FauI	CCCGC	1 cut(s)	423
FokI	GGATG	2 cut(s)	179, 301
FriOI	GRGCYC	1 cut(s)	123
FspBI	CTAG	1 cut(s)	210
HaeIII	GGCC	2 cut(s)	26, 470
Hin1II	CATG	2 cut(s)	71, 350
HindIII	AAGCTT	1 cut(s)	129
HinfI	GANTC	4 cut(s)	11, 32, 206, 490
HphI	GGTGA	1 cut(s)	520
Hpy166II	GTNNAC	2 cut(s)	10, 75
Hpy188I	TCNGA	2 cut(s)	103, 199
Hpy188III	TCNNGA	1 cut(s)	254
Hpy8I	GTNNAC	2 cut(s)	10, 75
HpyAV	CCTTC	5 cut(s)	74, 133, 353, 384, 451
HpyCH4IV	ACGT	1 cut(s)	410
HpyCH4V	TGCA	3 cut(s)	127, 170, 190
HpyF10VI	GCNNNNNNNGC	2 cut(s)	153, 467
HpySE526I	ACGT	1 cut(s)	410
Hsp92II	CATG	2 cut(s)	71, 350
Kzo9I	GATC	2 cut(s)	182, 475
LmnI	GCTCC	3 cut(s)	161, 397, 440
LweI	GCATC	1 cut(s)	157
MabI	ACCWGGT	1 cut(s)	504
MaeI	CTAG	1 cut(s)	210
MaeII	ACGT	1 cut(s)	410
MalI	GATC	2 cut(s)	184, 477
MbiI	CCGCTC	1 cut(s)	164
MboI	GATC	2 cut(s)	182, 475
MboII	GAAGA	7 cut(s)	9, 12, 27, 73, 272, 352, 430
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	3 cut(s)	244, 310, 541
MlyI	GAGTC	3 cut(s)	5, 26, 215
MmeI	TCCRAC	2 cut(s)	332, 375
MnlI	CCTC	3 cut(s)	146, 250, 489
MseI	TTAA	3 cut(s)	234, 309, 464
MslI	CAYNNNNRTG	1 cut(s)	520
MspR9I	CCNGG	1 cut(s)	506
MvaI	CCWGG	1 cut(s)	506
MwoI	GCNNNNNNNGC	2 cut(s)	153, 467
NdeII	GATC	2 cut(s)	182, 475
NlaIII	CATG	2 cut(s)	71, 350
NlaIV	GGNNCC	3 cut(s)	50, 399, 471
NspV	TTCGAA	1 cut(s)	38
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	490
PleI	GAGTC	3 cut(s)	5, 26, 214
PpsI	GAGTC	3 cut(s)	5, 26, 214
PshBI	ATTAAT	1 cut(s)	309
PsiI	TTATAA	1 cut(s)	546
Psp6I	CCWGG	1 cut(s)	504
PspGI	CCWGG	1 cut(s)	504
PspN4I	GGNNCC	3 cut(s)	50, 399, 471
PspPI	GGNCC	1 cut(s)	469
RsaI	GTAC	2 cut(s)	405, 413
RsaNI	GTAC	2 cut(s)	404, 412
RseI	CAYNNNNRTG	1 cut(s)	520
SaqAI	TTAA	3 cut(s)	234, 309, 464
Sau3AI	GATC	2 cut(s)	182, 475
Sau96I	GGNCC	1 cut(s)	469
SchI	GAGTC	3 cut(s)	5, 26, 215
ScrFI	CCNGG	1 cut(s)	506
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	7 cut(s)	57, 116, 133, 336, 395, 413, 510
SexAI	ACCWGGT	1 cut(s)	504
SfaNI	GCATC	1 cut(s)	157
SfuI	TTCGAA	1 cut(s)	38
SmiMI	CAYNNNNRTG	1 cut(s)	520
Sse9I	AATT	3 cut(s)	244, 310, 541
SsiI	CCGC	3 cut(s)	164, 222, 430
SspMI	CTAG	1 cut(s)	210
StyD4I	CCNGG	1 cut(s)	504
TaiI	ACGT	1 cut(s)	413
TaqI	TCGA	1 cut(s)	38
TasI	AATT	3 cut(s)	244, 310, 541
TatI	WGTACW	1 cut(s)	403
TfiI	GAWTC	1 cut(s)	490
Tru1I	TTAA	3 cut(s)	234, 309, 464
Tru9I	TTAA	3 cut(s)	234, 309, 464
TspDTI	ATGAA	3 cut(s)	285, 303, 504
TspGWI	ACGGA	1 cut(s)	469
VspI	ATTAAT	1 cut(s)	309
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.