Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002748

Physical Location & Seq

Genomic Coordinates Forward (+)

24310031 .. 24310722

Gene Structure 692 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG233800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGCCGGTTTCAAGTTCATTAACAACCATTAATTCATCCAACATAGGTTTTCGGCTTTTGAAGAAACAAGGTTGGAAAGAGGGAACTGGTCTTGGGATTTCTGAGCAGGGAAGGTTGGAGCCTGTAGCAACCTACGTGAAGAATAATAAACTGGGCCTGGGAGCAGACAAATTACAGAAGAAGAAGCTGCGTTCAGAAACCAAGGAATATCGACTCGCAGCAAAGAAGAGGACGAAGATGCAGGAGTTGGAAAAAAGATTGCAAGAGAAGGAATTTGAGCGCGCCTTTTGTAGGGAGTTCTGGCCAGATAATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch

Protein Analysis

105

Amino Acids

12.12

Weight (kDa)

9.95

Isoelectric Point (pI)

54.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch	PF01585	13 - 56	1.8e-17	G-patch domain
G-patch_2	PF12656	14 - 58	4.1e-06	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52350 AT5G08535 AT5G08535 AT5G08535 AT5G08535
fragaria_vesca	FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311
malus_domestica	MD13G1001300.v1.1
prunus_persica	Prupe.1G351400_v2.0.a1 Prupe.1G351400_v2.0.a1
pyrus_communis	pycom13g00100
rosa_chinensis	RchiOBHm_Chr4g0447151 RchiOBHm_Chr5g0030611
rosa_laevigata	RLG00000005600 RLG00000033233
rosa_multiflora	Rmu_sc0003238.1_g000010 Rmu_sc0008328.1_g000005 Rmu_ssc0000344.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049670 Rroxscaffold_5G00387540
rosa_rugosa	Rorug04G0378500 Rorug04G0378600 Rorug05G0118900
rosa_samantha	Rh4AG439800 Rh4BG448900 Rh4CG465900 Rh4DG447300 Rh5CG233800 Rh5DG214800
rosa_wichuraiana	Rw4G037630 Rw5G019320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	282
AcoI	YGGCCR	1 cut(s)	302
AcsI	RAATTY	1 cut(s)	272
AfiI	CCNNNNNNNGG	1 cut(s)	291
AgsI	TTSAA	2 cut(s)	12, 61
AjnI	CCWGG	1 cut(s)	156
AluBI	AGCT	1 cut(s)	187
AluI	AGCT	1 cut(s)	187
AoxI	GGCC	2 cut(s)	154, 302
ApeKI	GCWGC	2 cut(s)	187, 218
ApoI	RAATTY	1 cut(s)	272
AseI	ATTAAT	1 cut(s)	30
AspLEI	GCGC	2 cut(s)	282, 284
AspS9I	GGNCC	1 cut(s)	154
BalI	TGGCCA	1 cut(s)	304
BbvI	GCAGC	2 cut(s)	174, 230
BciT130I	CCWGG	1 cut(s)	158
BfmI	CTRYAG	1 cut(s)	123
BisI	GCNGC	2 cut(s)	188, 219
BlsI	GCNGC	2 cut(s)	189, 220
Bme1390I	CCNGG	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	1 cut(s)	158
BmrI	ACTGGG	1 cut(s)	161
BmsI	GCATC	1 cut(s)	228
BmuI	ACTGGG	1 cut(s)	161
BsaAI	YACGTR	1 cut(s)	136
BsaJI	CCNNGG	2 cut(s)	157, 201
Bsc4I	CCNNNNNNNGG	1 cut(s)	291
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	2 cut(s)	91, 156
BseBI	CCWGG	1 cut(s)	158
BseDI	CCNNGG	2 cut(s)	157, 201
BseGI	GGATG	1 cut(s)	35
BseLI	CCNNNNNNNGG	1 cut(s)	291
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	2 cut(s)	91, 156
BsePI	GCGCGC	1 cut(s)	280
BseXI	GCAGC	2 cut(s)	174, 230
Bsh1236I	CGCG	1 cut(s)	282
BshFI	GGCC	2 cut(s)	156, 304
BsiSI	CCGG	1 cut(s)	5
BslI	CCNNNNNNNGG	1 cut(s)	291
BsnI	GGCC	2 cut(s)	156, 304
BspANI	GGCC	2 cut(s)	156, 304
BspCNI	CTCAG	1 cut(s)	94
BspFNI	CGCG	1 cut(s)	282
BspLI	GGNNCC	1 cut(s)	120
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	2 cut(s)	91, 156
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	2 cut(s)	157, 201
BssHII	GCGCGC	1 cut(s)	280
BssT1I	CCWWGG	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	158
Bst6I	CTCTTC	1 cut(s)	221
BstBAI	YACGTR	1 cut(s)	136
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	1 cut(s)	102
BstENI	CCTNNNNNAGG	1 cut(s)	289
BstF5I	GGATG	1 cut(s)	35
BstFNI	CGCG	1 cut(s)	282
BstHHI	GCGC	2 cut(s)	282, 284
BstNI	CCWGG	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	156
BstSFI	CTRYAG	1 cut(s)	123
BstUI	CGCG	1 cut(s)	282
BstV1I	GCAGC	2 cut(s)	174, 230
BsuRI	GGCC	2 cut(s)	156, 304
BtsCI	GGATG	1 cut(s)	35
Cac8I	GCNNGC	1 cut(s)	282
CfoI	GCGC	2 cut(s)	282, 284
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	1 cut(s)	154
CviJI	RGCY	5 cut(s)	55, 121, 156, 187, 304
CviKI_1	RGCY	5 cut(s)	55, 121, 156, 187, 304
DdeI	CTNAG	1 cut(s)	102
EaeI	YGGCCR	1 cut(s)	302
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
Eco130I	CCWWGG	1 cut(s)	201
EcoNI	CCTNNNNNAGG	1 cut(s)	289
EcoRII	CCWGG	1 cut(s)	156
EcoT14I	CCWWGG	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	201
FaiI	YATR	1 cut(s)	44
Fnu4HI	GCNGC	2 cut(s)	188, 219
FokI	GGATG	1 cut(s)	22
Fsp4HI	GCNGC	2 cut(s)	188, 219
GlaI	GCGC	2 cut(s)	281, 283
GluI	GCNGC	2 cut(s)	188, 219
HaeIII	GGCC	2 cut(s)	156, 304
HapII	CCGG	1 cut(s)	5
HhaI	GCGC	2 cut(s)	282, 284
Hin6I	GCGC	2 cut(s)	280, 282
HinP1I	GCGC	2 cut(s)	280, 282
HinfI	GANTC	1 cut(s)	213
HpaII	CCGG	1 cut(s)	5
Hpy188I	TCNGA	2 cut(s)	103, 196
HpyAV	CCTTC	2 cut(s)	105, 262
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	2 cut(s)	241, 262
HpyF3I	CTNAG	1 cut(s)	102
HpySE526I	ACGT	1 cut(s)	135
HspAI	GCGC	2 cut(s)	280, 282
LmnI	GCTCC	2 cut(s)	118, 161
LpnPI	CCDG	9 cut(s)	18, 72, 92, 135, 137, 143, 170, 227, 286
Lsp1109I	GCAGC	2 cut(s)	174, 230
LweI	GCATC	1 cut(s)	228
MaeII	ACGT	1 cut(s)	135
MboII	GAAGA	6 cut(s)	73, 151, 190, 193, 238, 247
MlsI	TGGCCA	1 cut(s)	304
MluCI	AATT	3 cut(s)	31, 170, 272
MluNI	TGGCCA	1 cut(s)	304
MlyI	GAGTC	1 cut(s)	207
MmeI	TCCRAC	4 cut(s)	53, 63, 96, 228
MnlI	CCTC	2 cut(s)	73, 222
Mox20I	TGGCCA	1 cut(s)	304
MscI	TGGCCA	1 cut(s)	304
MseI	TTAA	2 cut(s)	20, 30
Msp20I	TGGCCA	1 cut(s)	304
MspI	CCGG	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	158
MvnI	CGCG	1 cut(s)	282
NlaIV	GGNNCC	1 cut(s)	120
PauI	GCGCGC	1 cut(s)	280
PkrI	GCNGC	2 cut(s)	189, 220
PleI	GAGTC	1 cut(s)	207
PpsI	GAGTC	1 cut(s)	207
Ppu21I	YACGTR	1 cut(s)	136
PshBI	ATTAAT	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
PspN4I	GGNNCC	1 cut(s)	120
PspPI	GGNCC	1 cut(s)	154
PteI	GCGCGC	1 cut(s)	280
SaqAI	TTAA	2 cut(s)	20, 30
SatI	GCNGC	2 cut(s)	188, 219
Sau96I	GGNCC	1 cut(s)	154
SchI	GAGTC	1 cut(s)	207
ScrFI	CCNGG	1 cut(s)	158
SetI	ASST	6 cut(s)	49, 73, 116, 134, 138, 189
SfaNI	GCATC	1 cut(s)	228
SfcI	CTRYAG	1 cut(s)	123
Sse9I	AATT	3 cut(s)	31, 170, 272
StyD4I	CCNGG	1 cut(s)	156
StyI	CCWWGG	1 cut(s)	201
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	1 cut(s)	211
TasI	AATT	3 cut(s)	31, 170, 272
Tru1I	TTAA	2 cut(s)	20, 30
Tru9I	TTAA	2 cut(s)	20, 30
TseI	GCWGC	2 cut(s)	187, 218
TspDTI	ATGAA	2 cut(s)	6, 24
VspI	ATTAAT	1 cut(s)	30
XagI	CCTNNNNNAGG	1 cut(s)	289
XapI	RAATTY	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.