FvH4_4g37311

G patch domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0002748
Physical Location & Seq
Forward (+)
33834307 .. 33836836
2530 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g37311.t10

Sequence Viewer

Length: 462 bp
ATGGTGCAGTCATCTTCTTCGGCCATAGACTCTTCCAATATTGGGTTTCAGGGTAGGTTAGAGCCTGGGCAAGCTTACTTGAAGCAAAGCAAACGAGGCTTAGGAGCAGATGCACCAAACAAAAGATCGTTGCAAGTTTCAGAAAACGAGTCTAGTGGAATGTCTGAAAAGAACATTAACGGCAAGAATTGGGTTCAGGATGAAGAAATGACGGCTTCAAGTTCATCAACAACCATTAACTCATCCAATATAGGCTTTCAGCTATTGAAGAAACATGGTTGGAAAGAAGGAACTGGTCTTGGCATTTCTGAGCAGGGAAGGCTGGAGCCTATACAAACGTACTTGAAGAATAATAAGCGGGGACTGGGAGCAGATAAAGTACAGAAGGTTTTAAAGCCCCCTGATCCTTCTCCCTTGAATGAAAAAAGTGGCCAGTTGTGTTGGTTTTCAGGAGCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-patch

Protein Analysis

154

Amino Acids

16.48

Weight (kDa)

9.24

Isoelectric Point (pI)

62.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-patch PF01585 82 - 107 8.8e-10 G-patch domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 358
AclWI GGATC 1 cut(s) 398
AcoI YGGCCR 2 cut(s) 21, 430
AfaI GTAC 2 cut(s) 341, 381
AfiI CCNNNNNNNGG 1 cut(s) 42
AgsI TTSAA 5 cut(s) 82, 219, 268, 346, 418
AjnI CCWGG 1 cut(s) 64
AluBI AGCT 3 cut(s) 74, 262, 455
AluI AGCT 3 cut(s) 74, 262, 455
AlwI GGATC 1 cut(s) 398
AlwNI CAGNNNCTG 1 cut(s) 455
AoxI GGCC 2 cut(s) 21, 430
ApeKI GCWGC 1 cut(s) 455
BalI TGGCCA 1 cut(s) 432
BbvI GCAGC 1 cut(s) 442
BceAI ACGGC 2 cut(s) 196, 228
BciT130I CCWGG 1 cut(s) 66
BfaI CTAG 1 cut(s) 153
BisI GCNGC 1 cut(s) 456
BlsI GCNGC 1 cut(s) 457
Bme1390I CCNGG 1 cut(s) 66
BmiI GGNNCC 1 cut(s) 327
BmrFI CCNGG 1 cut(s) 66
BmrI ACTGGG 1 cut(s) 374
BmsI GCATC 1 cut(s) 100
BmuI ACTGGG 1 cut(s) 374
BpmI CTGGAG 1 cut(s) 344
Bpu10I CCTNAGC 1 cut(s) 100
BsaJI CCNNGG 1 cut(s) 65
Bsc4I CCNNNNNNNGG 1 cut(s) 42
Bse1I ACTGG 3 cut(s) 298, 369, 433
BseBI CCWGG 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 65
BseGI GGATG 2 cut(s) 205, 242
BseLI CCNNNNNNNGG 1 cut(s) 42
BseMII CTCAG 1 cut(s) 300
BseNI ACTGG 3 cut(s) 298, 369, 433
BseXI GCAGC 1 cut(s) 442
BsgI GTGCAG 1 cut(s) 26
BshFI GGCC 2 cut(s) 23, 432
BslFI GGGAC 1 cut(s) 375
BslI CCNNNNNNNGG 1 cut(s) 42
BsmFI GGGAC 1 cut(s) 375
BsnI GGCC 2 cut(s) 23, 432
Bsp143I GATC 2 cut(s) 125, 403
BspACI CCGC 1 cut(s) 358
BspANI GGCC 2 cut(s) 23, 432
BspCNI CTCAG 1 cut(s) 301
BspLI GGNNCC 1 cut(s) 327
BspPI GGATC 1 cut(s) 398
BsrI ACTGG 3 cut(s) 298, 369, 433
BssECI CCNNGG 1 cut(s) 65
BssMI GATC 2 cut(s) 125, 403
Bst2UI CCWGG 1 cut(s) 66
Bst6I CTCTTC 1 cut(s) 37
BstC8I GCNNGC 1 cut(s) 72
BstDEI CTNAG 2 cut(s) 100, 309
BstF5I GGATG 2 cut(s) 205, 242
BstKTI GATC 2 cut(s) 128, 406
BstMBI GATC 2 cut(s) 125, 403
BstMWI GCNNNNNNNGC 2 cut(s) 96, 319
BstNI CCWGG 1 cut(s) 66
BstSCI CCNGG 1 cut(s) 64
BstV1I GCAGC 1 cut(s) 442
BsuRI GGCC 2 cut(s) 23, 432
BtsCI GGATG 2 cut(s) 205, 242
Cac8I GCNNGC 1 cut(s) 72
CaiI CAGNNNCTG 1 cut(s) 455
Csp6I GTAC 2 cut(s) 340, 380
CviAII CATG 1 cut(s) 275
CviQI GTAC 2 cut(s) 340, 380
DdeI CTNAG 2 cut(s) 100, 309
DpnI GATC 2 cut(s) 127, 405
DpnII GATC 2 cut(s) 125, 403
DraI TTTAAA 1 cut(s) 393
EaeI YGGCCR 2 cut(s) 21, 430
Eam1104I CTCTTC 1 cut(s) 37
EarI CTCTTC 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 64
FaeI CATG 1 cut(s) 278
FaiI YATR 5 cut(s) 26, 251, 276, 332, 460
FaqI GGGAC 1 cut(s) 375
FatI CATG 1 cut(s) 274
FauI CCCGC 1 cut(s) 351
Fnu4HI GCNGC 1 cut(s) 456
FokI GGATG 2 cut(s) 212, 229
Fsp4HI GCNGC 1 cut(s) 456
FspBI CTAG 1 cut(s) 153
GluI GCNGC 1 cut(s) 456
GsuI CTGGAG 1 cut(s) 344
HaeIII GGCC 2 cut(s) 23, 432
Hin1II CATG 1 cut(s) 278
HindIII AAGCTT 1 cut(s) 72
HinfI GANTC 2 cut(s) 29, 149
Hpy188I TCNGA 3 cut(s) 142, 166, 310
Hpy188III TCNNGA 2 cut(s) 197, 450
HpyAV CCTTC 4 cut(s) 281, 312, 379, 417
HpyCH4IV ACGT 1 cut(s) 338
HpyCH4V TGCA 4 cut(s) 7, 113, 133, 458
HpyF10VI GCNNNNNNNGC 2 cut(s) 96, 319
HpyF3I CTNAG 2 cut(s) 100, 309
HpySE526I ACGT 1 cut(s) 338
Hsp92II CATG 1 cut(s) 278
Kzo9I GATC 2 cut(s) 125, 403
LmnI GCTCC 4 cut(s) 104, 325, 368, 452
Lsp1109I GCAGC 1 cut(s) 442
LweI GCATC 1 cut(s) 100
MaeI CTAG 1 cut(s) 153
MaeII ACGT 1 cut(s) 338
MalI GATC 2 cut(s) 127, 405
MboI GATC 2 cut(s) 125, 403
MboII GAAGA 6 cut(s) 6, 9, 24, 215, 280, 358
MlsI TGGCCA 1 cut(s) 432
MluCI AATT 1 cut(s) 187
MluNI TGGCCA 1 cut(s) 432
MlyI GAGTC 2 cut(s) 23, 158
MmeI TCCRAC 1 cut(s) 260
MnlI CCTC 1 cut(s) 89
Mox20I TGGCCA 1 cut(s) 432
MscI TGGCCA 1 cut(s) 432
MseI TTAA 3 cut(s) 177, 237, 392
Msp20I TGGCCA 1 cut(s) 432
MspR9I CCNGG 1 cut(s) 66
MvaI CCWGG 1 cut(s) 66
MwoI GCNNNNNNNGC 2 cut(s) 96, 319
NdeII GATC 2 cut(s) 125, 403
NlaIII CATG 1 cut(s) 278
NlaIV GGNNCC 1 cut(s) 327
PkrI GCNGC 1 cut(s) 457
PleI GAGTC 2 cut(s) 23, 157
PpsI GAGTC 2 cut(s) 23, 157
Psp6I CCWGG 1 cut(s) 64
PspGI CCWGG 1 cut(s) 64
PspN4I GGNNCC 1 cut(s) 327
PstNI CAGNNNCTG 1 cut(s) 455
RsaI GTAC 2 cut(s) 341, 381
RsaNI GTAC 2 cut(s) 340, 380
SaqAI TTAA 3 cut(s) 177, 237, 392
SatI GCNGC 1 cut(s) 456
Sau3AI GATC 2 cut(s) 125, 403
SchI GAGTC 2 cut(s) 23, 158
ScrFI CCNGG 1 cut(s) 66
SetI ASST 6 cut(s) 59, 76, 264, 341, 390, 457
SfaNI GCATC 1 cut(s) 100
Sse9I AATT 1 cut(s) 187
SsiI CCGC 1 cut(s) 358
SspI AATATT 1 cut(s) 40
SspMI CTAG 1 cut(s) 153
StyD4I CCNGG 1 cut(s) 64
TaiI ACGT 1 cut(s) 341
TasI AATT 1 cut(s) 187
TatI WGTACW 1 cut(s) 379
Tru1I TTAA 3 cut(s) 177, 237, 392
Tru9I TTAA 3 cut(s) 177, 237, 392
TseI GCWGC 1 cut(s) 455
TspDTI ATGAA 3 cut(s) 213, 216, 435
XspI CTAG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.