Rh5DG214800

G patch domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0002748
Physical Location & Seq
Forward (+)
24315052 .. 24320645
5594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG214800.1

Sequence Viewer

Length: 510 bp
ATGGCGGTTTCAAGTTCATTAACAACCATTAATTCATCCAACATAGGTTTTCGGCTTTTGAAGAAACAAGGTTGGAAAGAGGGAACTGGTCTTGGGATTTCTGAGCAGGGAAGGTTGGAGCCTGTAGCAACCTACGTGAAGAATAATAAACTGGGCCTGGGAGCAGACAAATTACAGAAGAAGAAGCTGCGTTCAGAAACCAAGGAATATCGACTCGCAGCAAAGAAGAGGACGAAGATGCAGGAGTTGGAAAAAAGATTGCAAGAGAAGGAATTTGAGCGCGCCTTTTGTAGGGAGTTCTGGCCAGATAATTCTCCTCAGTTCAGGTGCAAAGATGTTGACCGTCAGATATTGTTATTCACCAAGATATCCGTCTATGATCAAGTGTTCAAGTACATGACCACAAGTAAAGAGACTCTCTCCATTGCGGCAGGATTAGGAACACAGACCGAAACATCAAGAAGCTTGAGACATGGAAAACAATCTGAGCTGGGAGGAATGGCAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-patch

Protein Analysis

169

Amino Acids

19.23

Weight (kDa)

9.87

Isoelectric Point (pI)

51.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-patch PF01585 13 - 56 4.8e-17 G-patch domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 282
AciI CCGC 2 cut(s) 5, 428
AcoI YGGCCR 1 cut(s) 302
AcsI RAATTY 1 cut(s) 272
AfaI GTAC 1 cut(s) 395
AfiI CCNNNNNNNGG 1 cut(s) 291
AgsI TTSAA 3 cut(s) 12, 61, 391
AjnI CCWGG 1 cut(s) 156
AluBI AGCT 3 cut(s) 187, 465, 490
AluI AGCT 3 cut(s) 187, 465, 490
Alw26I GTCTC 2 cut(s) 407, 463
AoxI GGCC 2 cut(s) 154, 302
ApeKI GCWGC 2 cut(s) 187, 218
ApoI RAATTY 1 cut(s) 272
AseI ATTAAT 1 cut(s) 30
AspLEI GCGC 2 cut(s) 282, 284
AspS9I GGNCC 1 cut(s) 154
AsuHPI GGTGA 1 cut(s) 352
BalI TGGCCA 1 cut(s) 304
BbvI GCAGC 2 cut(s) 174, 230
BciT130I CCWGG 1 cut(s) 158
BclI TGATCA 1 cut(s) 379
BcoDI GTCTC 2 cut(s) 407, 463
BfmI CTRYAG 1 cut(s) 123
BisI GCNGC 3 cut(s) 188, 219, 429
BlsI GCNGC 3 cut(s) 189, 220, 430
Bme1390I CCNGG 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 154
BmiI GGNNCC 1 cut(s) 120
BmrFI CCNGG 1 cut(s) 158
BmrI ACTGGG 1 cut(s) 161
BmsI GCATC 1 cut(s) 228
BmuI ACTGGG 1 cut(s) 161
BplI GAGNNNNNCTC 2 cut(s) 404, 436
BpuEI CTTGAG 1 cut(s) 487
BsaAI YACGTR 1 cut(s) 136
BsaJI CCNNGG 2 cut(s) 157, 201
Bsc4I CCNNNNNNNGG 1 cut(s) 291
Bse1I ACTGG 2 cut(s) 91, 156
Bse3DI GCAATG 1 cut(s) 423
BseBI CCWGG 1 cut(s) 158
BseDI CCNNGG 2 cut(s) 157, 201
BseGI GGATG 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 291
BseMI GCAATG 1 cut(s) 423
BseMII CTCAG 3 cut(s) 93, 332, 477
BseNI ACTGG 2 cut(s) 91, 156
BsePI GCGCGC 1 cut(s) 280
BseRI GAGGAG 1 cut(s) 306
BseXI GCAGC 2 cut(s) 174, 230
BseYI CCCAGC 1 cut(s) 490
Bsh1236I CGCG 1 cut(s) 282
BshFI GGCC 2 cut(s) 156, 304
BslI CCNNNNNNNGG 1 cut(s) 291
BsmAI GTCTC 2 cut(s) 407, 463
BsnI GGCC 2 cut(s) 156, 304
Bsp143I GATC 1 cut(s) 379
BspACI CCGC 2 cut(s) 5, 428
BspANI GGCC 2 cut(s) 156, 304
BspCNI CTCAG 3 cut(s) 94, 331, 478
BspFNI CGCG 1 cut(s) 282
BspLI GGNNCC 1 cut(s) 120
BsrDI GCAATG 1 cut(s) 423
BsrI ACTGG 2 cut(s) 91, 156
BssECI CCNNGG 2 cut(s) 157, 201
BssHII GCGCGC 1 cut(s) 280
BssMI GATC 1 cut(s) 379
BssT1I CCWWGG 1 cut(s) 201
Bst2UI CCWGG 1 cut(s) 158
Bst4CI ACNGT 1 cut(s) 344
Bst6I CTCTTC 1 cut(s) 221
BstBAI YACGTR 1 cut(s) 136
BstC8I GCNNGC 1 cut(s) 282
BstDEI CTNAG 3 cut(s) 102, 318, 486
BstENI CCTNNNNNAGG 1 cut(s) 289
BstF5I GGATG 1 cut(s) 35
BstFNI CGCG 1 cut(s) 282
BstHHI GCGC 2 cut(s) 282, 284
BstKTI GATC 1 cut(s) 382
BstMAI GTCTC 2 cut(s) 407, 463
BstMBI GATC 1 cut(s) 379
BstNI CCWGG 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 156
BstSFI CTRYAG 1 cut(s) 123
BstUI CGCG 1 cut(s) 282
BstV1I GCAGC 2 cut(s) 174, 230
BsuRI GGCC 2 cut(s) 156, 304
BtsCI GGATG 1 cut(s) 35
Cac8I GCNNGC 1 cut(s) 282
CfoI GCGC 2 cut(s) 282, 284
Cfr13I GGNCC 1 cut(s) 154
Csp6I GTAC 1 cut(s) 394
CviAII CATG 2 cut(s) 397, 473
CviJI RGCY 7 cut(s) 55, 121, 156, 187, 304, 465, 490
CviKI_1 RGCY 7 cut(s) 55, 121, 156, 187, 304, 465, 490
CviQI GTAC 1 cut(s) 394
DdeI CTNAG 3 cut(s) 102, 318, 486
DpnI GATC 1 cut(s) 381
DpnII GATC 1 cut(s) 379
EaeI YGGCCR 1 cut(s) 302
Eam1104I CTCTTC 1 cut(s) 221
EarI CTCTTC 1 cut(s) 221
Eco130I CCWWGG 1 cut(s) 201
Eco32I GATATC 1 cut(s) 369
EcoNI CCTNNNNNAGG 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 156
EcoRV GATATC 1 cut(s) 369
EcoT14I CCWWGG 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 2 cut(s) 400, 476
FaiI YATR 5 cut(s) 44, 378, 398, 474, 508
FatI CATG 2 cut(s) 396, 472
FbaI TGATCA 1 cut(s) 379
Fnu4HI GCNGC 3 cut(s) 188, 219, 429
FokI GGATG 1 cut(s) 22
Fsp4HI GCNGC 3 cut(s) 188, 219, 429
GlaI GCGC 2 cut(s) 281, 283
GluI GCNGC 3 cut(s) 188, 219, 429
GsaI CCCAGC 1 cut(s) 494
HaeIII GGCC 2 cut(s) 156, 304
HhaI GCGC 2 cut(s) 282, 284
Hin1II CATG 2 cut(s) 400, 476
Hin6I GCGC 2 cut(s) 280, 282
HinP1I GCGC 2 cut(s) 280, 282
HincII GTYRAC 1 cut(s) 340
HindII GTYRAC 1 cut(s) 340
HindIII AAGCTT 1 cut(s) 463
HinfI GANTC 2 cut(s) 213, 415
HphI GGTGA 1 cut(s) 352
Hpy166II GTNNAC 1 cut(s) 340
Hpy188I TCNGA 4 cut(s) 103, 196, 348, 487
Hpy188III TCNNGA 1 cut(s) 459
Hpy8I GTNNAC 1 cut(s) 340
HpyAV CCTTC 2 cut(s) 105, 262
HpyCH4III ACNGT 1 cut(s) 344
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 3 cut(s) 241, 262, 330
HpyF3I CTNAG 3 cut(s) 102, 318, 486
HpySE526I ACGT 1 cut(s) 135
Hsp92II CATG 2 cut(s) 400, 476
HspAI GCGC 2 cut(s) 280, 282
Ksp22I TGATCA 1 cut(s) 379
Kzo9I GATC 1 cut(s) 379
LmnI GCTCC 2 cut(s) 118, 161
Lsp1109I GCAGC 2 cut(s) 174, 230
LweI GCATC 1 cut(s) 228
MaeII ACGT 1 cut(s) 135
MalI GATC 1 cut(s) 381
MboI GATC 1 cut(s) 379
MboII GAAGA 6 cut(s) 73, 151, 190, 193, 238, 247
MlsI TGGCCA 1 cut(s) 304
MluCI AATT 4 cut(s) 31, 170, 272, 310
MluNI TGGCCA 1 cut(s) 304
MlyI GAGTC 2 cut(s) 207, 409
MmeI TCCRAC 4 cut(s) 53, 63, 96, 228
MnlI CCTC 4 cut(s) 73, 222, 327, 488
Mox20I TGGCCA 1 cut(s) 304
MscI TGGCCA 1 cut(s) 304
MseI TTAA 2 cut(s) 20, 30
Msp20I TGGCCA 1 cut(s) 304
MspR9I CCNGG 1 cut(s) 158
MvaI CCWGG 1 cut(s) 158
MvnI CGCG 1 cut(s) 282
NdeII GATC 1 cut(s) 379
NlaIII CATG 2 cut(s) 400, 476
NlaIV GGNNCC 1 cut(s) 120
PauI GCGCGC 1 cut(s) 280
PkrI GCNGC 3 cut(s) 189, 220, 430
PleI GAGTC 2 cut(s) 207, 409
PpsI GAGTC 2 cut(s) 207, 409
Ppu21I YACGTR 1 cut(s) 136
PshBI ATTAAT 1 cut(s) 30
Psp6I CCWGG 1 cut(s) 156
PspFI CCCAGC 1 cut(s) 490
PspGI CCWGG 1 cut(s) 156
PspN4I GGNNCC 1 cut(s) 120
PspPI GGNCC 1 cut(s) 154
PteI GCGCGC 1 cut(s) 280
RsaI GTAC 1 cut(s) 395
RsaNI GTAC 1 cut(s) 394
SaqAI TTAA 2 cut(s) 20, 30
SatI GCNGC 3 cut(s) 188, 219, 429
Sau3AI GATC 1 cut(s) 379
Sau96I GGNCC 1 cut(s) 154
SchI GAGTC 2 cut(s) 207, 409
ScrFI CCNGG 1 cut(s) 158
SetI ASST 9 cut(s) 49, 73, 116, 134, 138, 189, 329, 467, 492
SfaNI GCATC 1 cut(s) 228
SfcI CTRYAG 1 cut(s) 123
SmlI CTYRAG 1 cut(s) 466
SmoI CTYRAG 1 cut(s) 466
Sse9I AATT 4 cut(s) 31, 170, 272, 310
SsiI CCGC 2 cut(s) 5, 428
StyD4I CCNGG 1 cut(s) 156
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 1 cut(s) 344
TaiI ACGT 1 cut(s) 138
TaqI TCGA 1 cut(s) 211
TaqII GACCGA 1 cut(s) 464
TasI AATT 4 cut(s) 31, 170, 272, 310
TatI WGTACW 1 cut(s) 393
TauI GCSGC 1 cut(s) 431
Tru1I TTAA 2 cut(s) 20, 30
Tru9I TTAA 2 cut(s) 20, 30
TseI GCWGC 2 cut(s) 187, 218
TspDTI ATGAA 2 cut(s) 6, 24
TspGWI ACGGA 1 cut(s) 361
VspI ATTAAT 1 cut(s) 30
XagI CCTNNNNNAGG 1 cut(s) 289
XapI RAATTY 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.