Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002748

Physical Location & Seq

Genomic Coordinates Reverse (-)

96609 .. 99733

Gene Structure 3125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1001300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTATTTTTTCCTTCTTTTGGTTAAAGGGAAAAGAAAGAAAGGAAAAACTGGCCGAAAGCCATCAATCATCTGTGTGTTCATGGGAGAGGAGGAGGCGGTAACGGTGCGGTCATCTTCTTCAGCTCCAGCTATAGACTCCTCCAATATTGGGTTTCAGCGTAGGCTAGAGCCTATTCAAGCTTACTTGAAGGACAACAAACGCGGCATAGGAGCAGATACTTCAACAAATAAATTCTTGCCGGTTTCTGAAATTTCAGATTCTAGTCGACGAAAGTATGAAAAGGAGGAAGAAGGTATGGGAAACGGCATGATGTCTTCAAGTTGTTCATCAACAGCCATCAATTCCTCCAATATAGGCTTTCAGCTTTTGAAGAAACATGGTTGGAAAGAAGGAACTGGTCTTGGGATTTCTGAGCAGGGAAGGTTAGAGCCTGTACAGACTTACTTAAAGAATAATAAACGGGGCCTGGGAGCAGAAAAGTTAAAGAAGGCGCTAAAGCCCCCTGATTCTACTGCCTTGAATAAAAAAAATGACCAGGAGGGGCAATCAAGAAAAGGCAAGGGACTCTCCAAGAAGATGAAGAAGATGCAGGAGTTAGAGAAAAATTTGCAGGAGAGAGAATTTGAGCGTGCCTTTTTCAGGGAGTTTTGGCCAGATAACGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch

Protein Analysis

223

Amino Acids

24.95

Weight (kDa)

9.82

Isoelectric Point (pI)

58.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch	PF01585	117 - 160	6.1e-18	G-patch domain
G-patch_2	PF12656	117 - 162	9.5e-06	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52350 AT5G08535 AT5G08535 AT5G08535 AT5G08535
fragaria_vesca	FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311
malus_domestica	MD13G1001300.v1.1
prunus_persica	Prupe.1G351400_v2.0.a1 Prupe.1G351400_v2.0.a1
pyrus_communis	pycom13g00100
rosa_chinensis	RchiOBHm_Chr4g0447151 RchiOBHm_Chr5g0030611
rosa_laevigata	RLG00000005600 RLG00000033233
rosa_multiflora	Rmu_sc0003238.1_g000010 Rmu_sc0008328.1_g000005 Rmu_ssc0000344.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049670 Rroxscaffold_5G00387540
rosa_rugosa	Rorug04G0378500 Rorug04G0378600 Rorug05G0118900
rosa_samantha	Rh4AG439800 Rh4BG448900 Rh4CG465900 Rh4DG447300 Rh5CG233800 Rh5DG214800
rosa_wichuraiana	Rw4G037630 Rw5G019320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	268
AccII	CGCG	1 cut(s)	204
AciI	CCGC	3 cut(s)	98, 109, 204
AclI	AACGTT	1 cut(s)	663
AcoI	YGGCCR	2 cut(s)	52, 653
AcsI	RAATTY	4 cut(s)	233, 252, 607, 623
AcuI	CTGAAG	1 cut(s)	105
AfaI	GTAC	1 cut(s)	438
AfiI	CCNNNNNNNGG	3 cut(s)	19, 150, 642
AgsI	TTSAA	6 cut(s)	179, 190, 225, 321, 373, 523
AjnI	CCWGG	2 cut(s)	468, 537
AluBI	AGCT	4 cut(s)	125, 131, 182, 367
AluI	AGCT	4 cut(s)	125, 131, 182, 367
AoxI	GGCC	3 cut(s)	52, 466, 653
ApoI	RAATTY	4 cut(s)	233, 252, 607, 623
AspLEI	GCGC	1 cut(s)	496
AspS9I	GGNCC	1 cut(s)	466
BalI	TGGCCA	1 cut(s)	655
BbsI	GAAGAC	1 cut(s)	309
BccI	CCATC	2 cut(s)	70, 347
BceAI	ACGGC	1 cut(s)	322
BciT130I	CCWGG	2 cut(s)	470, 539
BfaI	CTAG	2 cut(s)	167, 264
BfmI	CTRYAG	1 cut(s)	132
BfoI	RGCGCY	1 cut(s)	497
BisI	GCNGC	1 cut(s)	205
BlsI	GCNGC	1 cut(s)	206
Bme1390I	CCNGG	2 cut(s)	470, 539
BmgT120I	GGNCC	1 cut(s)	466
BmiI	GGNNCC	1 cut(s)	467
BmrFI	CCNGG	2 cut(s)	470, 539
BmsI	GCATC	1 cut(s)	579
BpiI	GAAGAC	1 cut(s)	309
BpmI	CTGGAG	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	469
Bsc4I	CCNNNNNNNGG	3 cut(s)	19, 150, 642
Bse118I	RCCGGY	1 cut(s)	241
Bse1I	ACTGG	2 cut(s)	55, 403
BseBI	CCWGG	2 cut(s)	470, 539
BseDI	CCNNGG	1 cut(s)	469
BseLI	CCNNNNNNNGG	3 cut(s)	19, 150, 642
BseMII	CTCAG	1 cut(s)	405
BseNI	ACTGG	2 cut(s)	55, 403
BseRI	GAGGAG	3 cut(s)	104, 107, 130
Bsh1236I	CGCG	1 cut(s)	204
BshFI	GGCC	3 cut(s)	54, 468, 655
BsiSI	CCGG	1 cut(s)	242
BslFI	GGGAC	1 cut(s)	579
BslI	CCNNNNNNNGG	3 cut(s)	19, 150, 642
BsmFI	GGGAC	1 cut(s)	579
BsnI	GGCC	3 cut(s)	54, 468, 655
Bsp1407I	TGTACA	1 cut(s)	436
BspACI	CCGC	3 cut(s)	98, 109, 204
BspANI	GGCC	3 cut(s)	54, 468, 655
BspCNI	CTCAG	1 cut(s)	406
BspFNI	CGCG	1 cut(s)	204
BspLI	GGNNCC	1 cut(s)	467
BsrFI	RCCGGY	1 cut(s)	241
BsrGI	TGTACA	1 cut(s)	436
BsrI	ACTGG	2 cut(s)	55, 403
BssAI	RCCGGY	1 cut(s)	241
BssECI	CCNNGG	1 cut(s)	469
Bst2UI	CCWGG	2 cut(s)	470, 539
Bst4CI	ACNGT	1 cut(s)	106
BstAUI	TGTACA	1 cut(s)	436
BstC8I	GCNNGC	1 cut(s)	633
BstDEI	CTNAG	1 cut(s)	414
BstENI	CCTNNNNNAGG	1 cut(s)	640
BstFNI	CGCG	1 cut(s)	204
BstH2I	RGCGCY	1 cut(s)	497
BstHHI	GCGC	1 cut(s)	496
BstNI	CCWGG	2 cut(s)	470, 539
BstSCI	CCNGG	2 cut(s)	468, 537
BstSFI	CTRYAG	1 cut(s)	132
BstUI	CGCG	1 cut(s)	204
BstV2I	GAAGAC	1 cut(s)	309
BsuRI	GGCC	3 cut(s)	54, 468, 655
Cac8I	GCNNGC	1 cut(s)	633
CfoI	GCGC	1 cut(s)	496
Cfr10I	RCCGGY	1 cut(s)	241
Cfr13I	GGNCC	1 cut(s)	466
Csp6I	GTAC	1 cut(s)	437
CviAII	CATG	3 cut(s)	82, 310, 380
CviQI	GTAC	1 cut(s)	437
DdeI	CTNAG	1 cut(s)	414
EaeI	YGGCCR	2 cut(s)	52, 653
Eco57I	CTGAAG	1 cut(s)	105
EcoNI	CCTNNNNNAGG	1 cut(s)	640
EcoO109I	RGGNCCY	1 cut(s)	466
EcoRII	CCWGG	2 cut(s)	468, 537
FaeI	CATG	3 cut(s)	85, 313, 383
FaiI	YATR	8 cut(s)	83, 134, 209, 279, 299, 311, 356, 381
FaqI	GGGAC	1 cut(s)	579
FatI	CATG	3 cut(s)	81, 309, 379
FblI	GTMKAC	1 cut(s)	268
Fnu4HI	GCNGC	1 cut(s)	205
Fsp4HI	GCNGC	1 cut(s)	205
FspBI	CTAG	2 cut(s)	167, 264
GlaI	GCGC	1 cut(s)	495
GluI	GCNGC	1 cut(s)	205
GsuI	CTGGAG	1 cut(s)	111
HaeII	RGCGCY	1 cut(s)	497
HaeIII	GGCC	3 cut(s)	54, 468, 655
HapII	CCGG	1 cut(s)	242
HhaI	GCGC	1 cut(s)	496
Hin1II	CATG	3 cut(s)	85, 313, 383
Hin6I	GCGC	1 cut(s)	494
HinP1I	GCGC	1 cut(s)	494
HincII	GTYRAC	1 cut(s)	269
HindII	GTYRAC	1 cut(s)	269
HindIII	AAGCTT	1 cut(s)	180
HinfI	GANTC	4 cut(s)	137, 260, 509, 567
HpaII	CCGG	1 cut(s)	242
Hpy166II	GTNNAC	1 cut(s)	269
Hpy188I	TCNGA	3 cut(s)	250, 259, 415
Hpy188III	TCNNGA	1 cut(s)	552
Hpy8I	GTNNAC	1 cut(s)	269
Hpy99I	CGWCG	1 cut(s)	273
HpyAV	CCTTC	6 cut(s)	23, 184, 287, 386, 417, 484
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4IV	ACGT	1 cut(s)	663
HpyCH4V	TGCA	2 cut(s)	592, 613
HpyF3I	CTNAG	1 cut(s)	414
HpySE526I	ACGT	1 cut(s)	663
Hsp92II	CATG	3 cut(s)	85, 313, 383
HspAI	GCGC	1 cut(s)	494
LmnI	GCTCC	3 cut(s)	130, 212, 473
LweI	GCATC	1 cut(s)	579
MaeI	CTAG	2 cut(s)	167, 264
MaeII	ACGT	1 cut(s)	663
MaeIII	GTNAC	1 cut(s)	100
MboII	GAAGA	8 cut(s)	108, 111, 302, 309, 385, 589, 595, 598
MlsI	TGGCCA	1 cut(s)	655
MluCI	AATT	5 cut(s)	233, 252, 343, 607, 623
MluNI	TGGCCA	1 cut(s)	655
MlyI	GAGTC	2 cut(s)	131, 561
MmeI	TCCRAC	1 cut(s)	365
MnlI	CCTC	7 cut(s)	82, 85, 88, 151, 280, 358, 535
Mox20I	TGGCCA	1 cut(s)	655
MscI	TGGCCA	1 cut(s)	655
MseI	TTAA	4 cut(s)	24, 449, 485, 667
MslI	CAYNNNNRTG	1 cut(s)	74
Msp20I	TGGCCA	1 cut(s)	655
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	2 cut(s)	470, 539
MvaI	CCWGG	2 cut(s)	470, 539
MvnI	CGCG	1 cut(s)	204
NlaIII	CATG	3 cut(s)	85, 313, 383
NlaIV	GGNNCC	1 cut(s)	467
PfeI	GAWTC	2 cut(s)	260, 509
PkrI	GCNGC	1 cut(s)	206
PleI	GAGTC	2 cut(s)	131, 561
PpsI	GAGTC	2 cut(s)	131, 561
Psp1406I	AACGTT	1 cut(s)	663
Psp6I	CCWGG	2 cut(s)	468, 537
PspGI	CCWGG	2 cut(s)	468, 537
PspN4I	GGNNCC	1 cut(s)	467
PspPI	GGNCC	1 cut(s)	466
RsaI	GTAC	1 cut(s)	438
RsaNI	GTAC	1 cut(s)	437
RseI	CAYNNNNRTG	1 cut(s)	74
SalI	GTCGAC	1 cut(s)	267
SaqAI	TTAA	4 cut(s)	24, 449, 485, 667
SatI	GCNGC	1 cut(s)	205
Sau96I	GGNCC	1 cut(s)	466
SchI	GAGTC	2 cut(s)	131, 561
ScrFI	CCNGG	2 cut(s)	470, 539
SetI	ASST	7 cut(s)	127, 133, 184, 298, 369, 428, 666
SfaNI	GCATC	1 cut(s)	579
SfcI	CTRYAG	1 cut(s)	132
SmiMI	CAYNNNNRTG	1 cut(s)	74
Sse9I	AATT	5 cut(s)	233, 252, 343, 607, 623
SsiI	CCGC	3 cut(s)	98, 109, 204
SspI	AATATT	1 cut(s)	148
SspMI	CTAG	2 cut(s)	167, 264
StyD4I	CCNGG	2 cut(s)	468, 537
TaaI	ACNGT	1 cut(s)	106
TaiI	ACGT	1 cut(s)	666
TaqI	TCGA	1 cut(s)	268
TasI	AATT	5 cut(s)	233, 252, 343, 607, 623
TatI	WGTACW	1 cut(s)	436
TauI	GCSGC	1 cut(s)	207
TfiI	GAWTC	2 cut(s)	260, 509
Tru1I	TTAA	4 cut(s)	24, 449, 485, 667
Tru9I	TTAA	4 cut(s)	24, 449, 485, 667
TspDTI	ATGAA	4 cut(s)	70, 294, 318, 596
XagI	CCTNNNNNAGG	1 cut(s)	640
XapI	RAATTY	4 cut(s)	233, 252, 607, 623
XmiI	GTMKAC	1 cut(s)	268
XspI	CTAG	2 cut(s)	167, 264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.