Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002748

Physical Location & Seq

Genomic Coordinates Forward (+)

66146577 .. 66149615

Gene Structure 3039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00387540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGATGGTGGACTCATCTTCTTCGGCCATAGACTCTTCGAATATCGGGTTCCAGCTTTTGAAGAAACACGGGTGGACAGAAGGAACGGGTCTCGGTGCTTCCGAGCAGGGTAGGTTAGAGCCCGTGCAAGCTTACTTGAAGGAAAGCAAACGAGGCTTGGGAGCGGATGCACCAAAAAAAAGATCATTGCAAGTTTCAGAAAATGAGTCTAGTGGAAAGTTCGCAAAGAACATTAACTTCACAAATAGGGTTCAGGAGGAAGAAAGAATAAGAAAGGATATGACGGCTTCAACTTCATCAACAGCCATTAATTCATCCAATATAGGCTTTCAGCTTTTGAAGAAACATGGTTGGAAAGAAGGAACTGGTCTTGGCATTTGTGAGCAGGGAAGGTTGGAACCTGTACAAACGTACTTGAAGAATAATAAGCGGGGACTGGGAGCAGATAAGATACGGAAGGCTTTAAAGCCCCCTGATCCTCCTGCCTTGAATAAAAAAATGACCAGGAGCTGCATTCAAAAAAATCCAAGGGTCTCTCAAAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch

Protein Analysis

182

Amino Acids

20.08

Weight (kDa)

10.08

Isoelectric Point (pI)

54.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch	PF01585	13 - 56	2e-17	G-patch domain
G-patch_2	PF12656	14 - 57	8.8e-06	G-patch domain
G-patch	PF01585	106 - 149	7e-18	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52350 AT5G08535 AT5G08535 AT5G08535 AT5G08535
fragaria_vesca	FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311 FvH4_4g37311
malus_domestica	MD13G1001300.v1.1
prunus_persica	Prupe.1G351400_v2.0.a1 Prupe.1G351400_v2.0.a1
pyrus_communis	pycom13g00100
rosa_chinensis	RchiOBHm_Chr4g0447151 RchiOBHm_Chr5g0030611
rosa_laevigata	RLG00000005600 RLG00000033233
rosa_multiflora	Rmu_sc0003238.1_g000010 Rmu_sc0008328.1_g000005 Rmu_ssc0000344.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049670 Rroxscaffold_5G00387540
rosa_rugosa	Rorug04G0378500 Rorug04G0378600 Rorug05G0118900
rosa_samantha	Rh4AG439800 Rh4BG448900 Rh4CG465900 Rh4DG447300 Rh5CG233800 Rh5DG214800
rosa_wichuraiana	Rw4G037630 Rw5G019320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	164
AciI	CCGC	2 cut(s)	164, 430
AclWI	GGATC	1 cut(s)	470
AcoI	YGGCCR	1 cut(s)	24
AfaI	GTAC	2 cut(s)	405, 413
AgsI	TTSAA	7 cut(s)	61, 139, 291, 340, 418, 490, 518
AjnI	CCWGG	1 cut(s)	503
AluBI	AGCT	4 cut(s)	55, 131, 334, 510
AluI	AGCT	4 cut(s)	55, 131, 334, 510
Alw26I	GTCTC	2 cut(s)	95, 538
AlwI	GGATC	1 cut(s)	470
AlwNI	CAGNNNCTG	1 cut(s)	510
AoxI	GGCC	1 cut(s)	24
ApeKI	GCWGC	1 cut(s)	510
AseI	ATTAAT	1 cut(s)	309
AsuII	TTCGAA	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	497
BceAI	ACGGC	1 cut(s)	300
BciT130I	CCWGG	1 cut(s)	505
BcoDI	GTCTC	2 cut(s)	95, 538
BfaI	CTAG	1 cut(s)	210
BisI	GCNGC	1 cut(s)	511
BlsI	GCNGC	1 cut(s)	512
Bme1390I	CCNGG	1 cut(s)	505
BmiI	GGNNCC	2 cut(s)	50, 399
BmrFI	CCNGG	1 cut(s)	505
BmrI	ACTGGG	1 cut(s)	446
BmsI	GCATC	1 cut(s)	157
BmuI	ACTGGG	1 cut(s)	446
Bpu14I	TTCGAA	1 cut(s)	38
BsaI	GGTCTC	2 cut(s)	95, 538
BsaJI	CCNNGG	1 cut(s)	527
Bse1I	ACTGG	2 cut(s)	370, 441
Bse3DI	GCAATG	1 cut(s)	185
BseBI	CCWGG	1 cut(s)	505
BseDI	CCNNGG	1 cut(s)	527
BseGI	GGATG	2 cut(s)	172, 314
BseMI	GCAATG	1 cut(s)	185
BseNI	ACTGG	2 cut(s)	370, 441
BseXI	GCAGC	1 cut(s)	497
BshFI	GGCC	1 cut(s)	26
BslFI	GGGAC	1 cut(s)	447
BsmAI	GTCTC	2 cut(s)	95, 538
BsmFI	GGGAC	1 cut(s)	447
BsmI	GAATGC	1 cut(s)	513
BsnI	GGCC	1 cut(s)	26
Bso31I	GGTCTC	2 cut(s)	95, 538
Bsp119I	TTCGAA	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp1407I	TGTACA	1 cut(s)	403
Bsp143I	GATC	2 cut(s)	182, 475
BspACI	CCGC	2 cut(s)	164, 430
BspANI	GGCC	1 cut(s)	26
BspLI	GGNNCC	2 cut(s)	50, 399
BspPI	GGATC	1 cut(s)	470
BspT104I	TTCGAA	1 cut(s)	38
BspTNI	GGTCTC	2 cut(s)	95, 538
BsrBI	CCGCTC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	185
BsrGI	TGTACA	1 cut(s)	403
BsrI	ACTGG	2 cut(s)	370, 441
BssECI	CCNNGG	1 cut(s)	527
BssMI	GATC	2 cut(s)	182, 475
BssT1I	CCWWGG	1 cut(s)	527
Bst2UI	CCWGG	1 cut(s)	505
Bst6I	CTCTTC	1 cut(s)	40
BstAUI	TGTACA	1 cut(s)	403
BstBI	TTCGAA	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	129
BstF5I	GGATG	2 cut(s)	172, 314
BstKTI	GATC	2 cut(s)	185, 478
BstMAI	GTCTC	2 cut(s)	95, 538
BstMBI	GATC	2 cut(s)	182, 475
BstMWI	GCNNNNNNNGC	1 cut(s)	153
BstNI	CCWGG	1 cut(s)	505
BstSCI	CCNGG	1 cut(s)	503
BstV1I	GCAGC	1 cut(s)	497
BsuRI	GGCC	1 cut(s)	26
BtsCI	GGATG	2 cut(s)	172, 314
Cac8I	GCNNGC	1 cut(s)	129
CaiI	CAGNNNCTG	1 cut(s)	510
Csp6I	GTAC	2 cut(s)	404, 412
CviAII	CATG	1 cut(s)	347
CviQI	GTAC	2 cut(s)	404, 412
DpnI	GATC	2 cut(s)	184, 477
DpnII	GATC	2 cut(s)	182, 475
DraI	TTTAAA	1 cut(s)	465
EaeI	YGGCCR	1 cut(s)	24
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	527
Eco24I	GRGCYC	1 cut(s)	123
Eco31I	GGTCTC	2 cut(s)	95, 538
EcoRII	CCWGG	1 cut(s)	503
EcoT14I	CCWWGG	1 cut(s)	527
EcoT38I	GRGCYC	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	527
FaeI	CATG	1 cut(s)	350
FaiI	YATR	4 cut(s)	29, 281, 323, 348
FaqI	GGGAC	1 cut(s)	447
FatI	CATG	1 cut(s)	346
FauI	CCCGC	1 cut(s)	423
Fnu4HI	GCNGC	1 cut(s)	511
FokI	GGATG	2 cut(s)	179, 301
FriOI	GRGCYC	1 cut(s)	123
Fsp4HI	GCNGC	1 cut(s)	511
FspBI	CTAG	1 cut(s)	210
GluI	GCNGC	1 cut(s)	511
HaeIII	GGCC	1 cut(s)	26
Hin1II	CATG	1 cut(s)	350
HindIII	AAGCTT	1 cut(s)	129
HinfI	GANTC	3 cut(s)	11, 32, 206
Hpy166II	GTNNAC	2 cut(s)	10, 75
Hpy188I	TCNGA	2 cut(s)	103, 199
Hpy188III	TCNNGA	1 cut(s)	254
Hpy8I	GTNNAC	2 cut(s)	10, 75
HpyAV	CCTTC	5 cut(s)	74, 133, 353, 384, 451
HpyCH4IV	ACGT	1 cut(s)	410
HpyCH4V	TGCA	4 cut(s)	127, 170, 190, 513
HpyF10VI	GCNNNNNNNGC	1 cut(s)	153
HpySE526I	ACGT	1 cut(s)	410
Hsp92II	CATG	1 cut(s)	350
Kzo9I	GATC	2 cut(s)	182, 475
LmnI	GCTCC	3 cut(s)	161, 440, 507
Lsp1109I	GCAGC	1 cut(s)	497
LweI	GCATC	1 cut(s)	157
MaeI	CTAG	1 cut(s)	210
MaeII	ACGT	1 cut(s)	410
MalI	GATC	2 cut(s)	184, 477
MbiI	CCGCTC	1 cut(s)	164
MboI	GATC	2 cut(s)	182, 475
MboII	GAAGA	7 cut(s)	9, 12, 27, 73, 272, 352, 430
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	1 cut(s)	310
MlyI	GAGTC	3 cut(s)	5, 26, 215
MmeI	TCCRAC	2 cut(s)	332, 375
MnlI	CCTC	3 cut(s)	146, 250, 489
MseI	TTAA	3 cut(s)	234, 309, 464
MspR9I	CCNGG	1 cut(s)	505
Mva1269I	GAATGC	1 cut(s)	513
MvaI	CCWGG	1 cut(s)	505
MwoI	GCNNNNNNNGC	1 cut(s)	153
NdeII	GATC	2 cut(s)	182, 475
NlaIII	CATG	1 cut(s)	350
NlaIV	GGNNCC	2 cut(s)	50, 399
NspV	TTCGAA	1 cut(s)	38
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PctI	GAATGC	1 cut(s)	513
PkrI	GCNGC	1 cut(s)	512
PleI	GAGTC	3 cut(s)	5, 26, 214
PpsI	GAGTC	3 cut(s)	5, 26, 214
PshBI	ATTAAT	1 cut(s)	309
Psp6I	CCWGG	1 cut(s)	503
PspGI	CCWGG	1 cut(s)	503
PspN4I	GGNNCC	2 cut(s)	50, 399
PstNI	CAGNNNCTG	1 cut(s)	510
RsaI	GTAC	2 cut(s)	405, 413
RsaNI	GTAC	2 cut(s)	404, 412
SaqAI	TTAA	3 cut(s)	234, 309, 464
SatI	GCNGC	1 cut(s)	511
Sau3AI	GATC	2 cut(s)	182, 475
SchI	GAGTC	3 cut(s)	5, 26, 215
ScrFI	CCNGG	1 cut(s)	505
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	8 cut(s)	57, 116, 133, 336, 395, 403, 413, 512
SfaNI	GCATC	1 cut(s)	157
SfuI	TTCGAA	1 cut(s)	38
Sse9I	AATT	1 cut(s)	310
SsiI	CCGC	2 cut(s)	164, 430
SspMI	CTAG	1 cut(s)	210
StyD4I	CCNGG	1 cut(s)	503
StyI	CCWWGG	1 cut(s)	527
TaiI	ACGT	1 cut(s)	413
TaqI	TCGA	1 cut(s)	38
TasI	AATT	1 cut(s)	310
TatI	WGTACW	1 cut(s)	403
Tru1I	TTAA	3 cut(s)	234, 309, 464
Tru9I	TTAA	3 cut(s)	234, 309, 464
TseI	GCWGC	1 cut(s)	510
TspDTI	ATGAA	2 cut(s)	285, 303
TspGWI	ACGGA	1 cut(s)	469
VspI	ATTAAT	1 cut(s)	309
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.